Unreviewed,
UniProtKB/TrEMBL Q9JLX9 (Q9JLX9_RAT)
Last modified
January 19, 2010.
Version 38.
History...
Clusters with 100%,
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Names and origin · Protein attributes · General annotation (Comments) · Ontologies · Sequence annotation (Features) · Sequences · References · Cross-references · Entry information
Names and origin
| Protein names | Submitted name: Beta actin EMBL AAF31761.1 |
| Organism | Rattus norvegicus (Rat) EMBL AAF31761.1 |
| Taxonomic identifier | 10116 [NCBI] |
| Taxonomic lineage | Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Glires › Rodentia › Sciurognathi › Muroidea › Muridae › Murinae › Rattus |
Protein attributes
| Sequence length | 97 AA. |
| Sequence status | Fragment. |
| Protein existence | Evidence at transcript level. |
Ontologies
| Gene Ontology (GO) | |
|---|---|
| Biological process | response to calcium ion Inferred from expression pattern. Source: RGD sarcomere organizationInferred from electronic annotation. Source: Compara |
| Cellular component | MLL5-L complex Inferred from electronic annotation. Source: Compara NuA4 histone acetyltransferase complexInferred from electronic annotation. Source: Compara actin cytoskeletonInferred from electronic annotation. Source: Compara cortical cytoskeletonInferred from electronic annotation. Source: Compara cytosolInferred from electronic annotation. Source: Compara soluble fractionInferred from electronic annotation. Source: Compara |
| Molecular function | identical protein binding Inferred from electronic annotation. Source: Compara nitric-oxide synthase bindingInferred from electronic annotation. Source: Compara structural constituent of cytoskeletonInferred from electronic annotation. Source: Compara |
| Complete GO annotation... | |
Sequence annotation (Features)
| Feature key | Position(s) | Length | Description | Graphical view | Feature identifier | |||
Experimental info | ||||||||
|---|---|---|---|---|---|---|---|---|
| Non-terminal residue | 1 | 1 | EMBL AAF31761.1 | |||||
| Non-terminal residue | 97 | 1 | EMBL AAF31761.1 | |||||
Sequences
References
| [1] | "Increased Local Expression of ET-1 Enhances a-agonist Induced Contraction of Rat Aorta After Prolonged Hypoxia In Vivo." Toporsian M., Auer G., Zacour M., Cernacek P., Ward M.E. Submitted (JAN-1999) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE. Strain: Sprague-Dawley EMBL AAF31761.1. |
| + | Additional computationally mapped references. |
Cross-references
Sequence databases | |
|---|---|
| EMBL GenBank DDBJ | AF122902 mRNA. Translation: AAF31761.1. |
| IPI | IPI00189819. |
| UniGene | Rn.94978 |
3D structure databases | |
| HSSP | HSSP built from PDB template 1NM1 based on UniProtKB P02577. |
| SMR | Q9JLX9. Positions 1-97. |
| ModBase | Search... |
Protein-protein interaction databases | |
| STRING | Q9JLX9. |
Genome annotation databases | |
| Ensembl | ENSRNOT00000042459; ENSRNOP00000044296; ENSRNOG00000034254; Rattus norvegicus. [Genome view] ENSRNOT00000054976; ENSRNOP00000051859; ENSRNOG00000036701; Rattus norvegicus. [Genome view] |
Phylogenomic databases | |
| HOVERGEN | Q9JLX9. |
| InParanoid | Q9JLX9. |
Gene expression databases | |
| ArrayExpress | Q9JLX9. |
| Genevestigator | Q9JLX9. |
Family and domain databases | |
| InterPro | IPR004000. Actin-like. IPR020902. Actin/actin-like_CS. [Graphical view] |
| PANTHER | PTHR11937. Actin_like. 1 hit. |
| Pfam | PF00022. Actin. 1 hit. [Graphical view] |
| PRINTS | PR00190. ACTIN. |
| PROSITE | PS01132. ACTINS_ACT_LIKE. 1 hit. [Graphical view] |
| ProtoNet | Search... |
Entry information
| Entry name | Q9JLX9_RAT | ||||||||
| Accession | Primary (citable) accession number: Q9JLX9 | ||||||||
| Entry history |
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| Entry status | Unreviewed (UniProtKB/TrEMBL) | ||||||||
