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Q9JLI2

- Q9JLI2_MOUSE

UniProt

Q9JLI2 - Q9JLI2_MOUSE

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Protein
Submitted name: Collagen type V alpha 3 chain
Gene
Col5a3, mCG_67925
Organism
Mus musculus (Mouse)
Status
Unreviewed - Annotation score: 2 out of 5 - Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

  1. extracellular matrix structural constituent Source: InterPro
  2. heparin binding Source: MGI
  3. structural molecule activity Source: MGI

GO - Biological processi

  1. cell-matrix adhesion Source: MGI
  2. extracellular matrix organization Source: MGI
Complete GO annotation...

Enzyme and pathway databases

ReactomeiREACT_196606. ECM proteoglycans.
REACT_196607. Non-integrin membrane-ECM interactions.
REACT_196644. Syndecan interactions.
REACT_198984. Collagen biosynthesis and modifying enzymes.
REACT_199046. Assembly of collagen fibrils and other multimeric structures.
REACT_199055. Collagen degradation.
REACT_206066. Extracellular matrix organization.
REACT_216309. Integrin cell surface interactions.

Names & Taxonomyi

Protein namesi
Submitted name:
Collagen type V alpha 3 chainImported
Submitted name:
Collagen, type V, alpha 3Imported
Submitted name:
Procollagen, type V, alpha 3, isoform CRA_bImported
Submitted name:
Protein Col5a3Imported
Gene namesi
Name:Col5a3Imported
ORF Names:mCG_67925Imported
OrganismiMus musculus (Mouse)Imported
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus
ProteomesiUP000000589: Chromosome 9

Organism-specific databases

MGIiMGI:1858212. Col5a3.

Subcellular locationi

GO - Cellular componenti

  1. collagen type V trimer Source: MGI
Complete GO annotation...

Expressioni

Gene expression databases

GenevestigatoriQ9JLI2.

Family & Domainsi

Keywords - Domaini

CollagenImported

Phylogenomic databases

GeneTreeiENSGT00710000106385.
HOGENOMiHOG000085654.
HOVERGENiHBG004933.
InParanoidiQ9JLI2.
KOiK06236.
OMAiKGDVGQD.
OrthoDBiEOG7XPZ4W.
TreeFamiTF323987.

Family and domain databases

Gene3Di2.60.120.200. 1 hit.
InterProiIPR008160. Collagen.
IPR008985. ConA-like_lec_gl_sf.
IPR013320. ConA-like_subgrp.
IPR000885. Fib_collagen_C.
IPR001791. Laminin_G.
[Graphical view]
PfamiPF01410. COLFI. 1 hit.
PF01391. Collagen. 7 hits.
PF02210. Laminin_G_2. 1 hit.
[Graphical view]
ProDomiPD002078. Fib_collagen_C. 1 hit.
[Graphical view] [Entries sharing at least one domain]
SMARTiSM00038. COLFI. 1 hit.
SM00282. LamG. 1 hit.
SM00210. TSPN. 1 hit.
[Graphical view]
SUPFAMiSSF49899. SSF49899. 1 hit.
PROSITEiPS50025. LAM_G_DOMAIN. 1 hit.
PS51461. NC1_FIB. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q9JLI2-1 [UniParc]FASTAAdd to Basket

« Hide

MRSCRRLDQL QAGLCLLLAS LQLVSWTLAA EPVDVLEAWG VHRDQAGVAE     50
GPGFCPLRIP QGDRAFRVGK SSLLSVPTWQ LFPDGHFPEN FSVLLTLRAQ 100
PANQSVLLSI YDEKGVRQLG LALGPALGLL GDSFRPLPKQ VNIMDGRWHR 150
VAVSISGNKV TLVVDCEPQP PTFGQGPRFI STAGLTVMGT QDTREESFEG 200
DIQELLLIPD PQAAFQACES YLPGCETLDS TTTGAPKDDE PETPAPRRRK 250
GKGKKKGRGR KGKGRKKNKE TSELSPTPGA PENQTSLHIP ETEKTVPHLP 300
LTPTPLAITT TVTIGQNATV SQGLDSGTET EQTTPEVDST EEGEGGGPTM 350
GPKFRAAEQS LQTEFQIFPG AGEKGAKGEP ATVEQGQQFE GPAGAPGPRG 400
ISGPSGPPGP PGFPGDRGLP GPAGLPGIPG IDGARGLPGT VIMMPFHFAS 450
SSMKGPPVSF QQAQAQAVLQ QAQLSMKGPP GPVGLTGRPG PVGLPGYPGL 500
KGELGEVGPQ GPRGLQGPPG PPGREGKTGR AGADGARGLP GDTGPKGDRG 550
FDGLPGLPGE KGQRGDFGRV GQPGPPGEDG VKGLQGPPGP TGQAGEPGPR 600
GLIGPRGLPG PLGRPGVTGS DGAPGAKGNV GPPGEPGPPG QQGNHGSQGI 650
PGPQGPIGTP GEKGPPGNPG IPGVPGSEGP PGHPGHEGPT GEKGAQGPPG 700
SAGPRGYPGL RGVKGTSGNR GLQGEKGERG EDGFPGFKGD EGPKGDRGNP 750
GPPGPRGEDG PEGQKGPGGL PGDEGPPGAA GEKGKLGVPG LPGYPGRPGP 800
KGSIGFPGPL GPLGEKGKRG KAGQPGEEGE RGTPGTRGDR GQPGATGQPG 850
PKGDVGQNGS PGPPGEKGLP GLQGPPGFPG PKGPPGPQGK DGISGHPGQR 900
GELGFQGLTG PPGPAGVLGP QGKVGDVGPL GERGPPGPPG PPGEQGLPGI 950
EGREGAKGEL GPLGSVGKEG PPGPRGFPGP QGAPGDPGPI GLKGDKGPPG 1000
PVGANGSPGE RGPVGPSGGI GLPGQSGGQG PIGPAGEKGS PGERGTPGPT 1050
GKDGIPGPPG LQGPSGAAGP SGEEGDKGEV GMPGHKGSKG DKGDAGPPGP 1100
TGIRGPAGHS GLPGADGAQG RRGPPGLFGQ KGDDGVRGFV GVIGPPGLQG 1150
LPGPPGEKGE VGDVGSMGPH GAPGPRGPPG PSGSEGPPGL PGGVGQPGAV 1200
GEKGEPGDAG DAGPPGIPGI PGPKGEIGEK GDSGPSGAAG PPGKKGPPGE 1250
DGSKGNMGPT GLPGDLGPPG DPGVPGIDGI PGEKGNAGDI GGPGPPGASG 1300
EPGARGLPGK RGSPGRMGPE GREGEKGAKG DAGPDGPPGR TGPIGARGPP 1350
GRIGPDGLPG IPGPVGEPGL LGPPGLIGPP GPLGPPGLPG LKGDAGPKGE 1400
KGHIGLIGLI GPPGEAGEKG DQGLPGVQGP PGLQGDPGLP GPVGSLGHPG 1450
PPGVVGPLGQ KGSKGSPGSL GPRGDPGPAG PPGPPGSPAE VHGLRRRRSV 1500
TDTLEGGLEE VMASLNSLSL ELQQLQRPLG TAESPGLMCR ELHRDHPHLP 1550
DGEYWIDPNQ GCARDAFKVF CNFTAGGETC LYPDKKFETV KLASWSREKP 1600
GGWYSTFRRG KKFSYVDADG SPVNVVQLTF LKLLSAAAHQ RFTYICQNSV 1650
AWLDEAAGDH RHSIRFQGTN WEELSFNQTT AATIKVSHDG CRVRKGQAKT 1700
LFEFSSSVGF LPLWDVAASD FGQTNQKFGF ELGSICFSS 1739
Length:1,739
Mass (Da):171,969
Last modified:October 1, 2000 - v1
Checksum:iEFBDFEBA46E69984
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AC166365 Genomic DNA. No translation available.
AF176645 mRNA. Translation: AAF59901.1.
BC138417 mRNA. Translation: AAI38418.1.
BC138419 mRNA. Translation: AAI38420.1.
CH466522 Genomic DNA. Translation: EDL25130.1.
RefSeqiNP_058615.1. NM_016919.2.
UniGeneiMm.334994.

Genome annotation databases

EnsembliENSMUST00000004201; ENSMUSP00000004201; ENSMUSG00000004098.
GeneIDi53867.
KEGGimmu:53867.
UCSCiuc009ojf.1. mouse.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AC166365 Genomic DNA. No translation available.
AF176645 mRNA. Translation: AAF59901.1 .
BC138417 mRNA. Translation: AAI38418.1 .
BC138419 mRNA. Translation: AAI38420.1 .
CH466522 Genomic DNA. Translation: EDL25130.1 .
RefSeqi NP_058615.1. NM_016919.2.
UniGenei Mm.334994.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

Ensembli ENSMUST00000004201 ; ENSMUSP00000004201 ; ENSMUSG00000004098 .
GeneIDi 53867.
KEGGi mmu:53867.
UCSCi uc009ojf.1. mouse.

Organism-specific databases

CTDi 50509.
MGIi MGI:1858212. Col5a3.

Phylogenomic databases

GeneTreei ENSGT00710000106385.
HOGENOMi HOG000085654.
HOVERGENi HBG004933.
InParanoidi Q9JLI2.
KOi K06236.
OMAi KGDVGQD.
OrthoDBi EOG7XPZ4W.
TreeFami TF323987.

Enzyme and pathway databases

Reactomei REACT_196606. ECM proteoglycans.
REACT_196607. Non-integrin membrane-ECM interactions.
REACT_196644. Syndecan interactions.
REACT_198984. Collagen biosynthesis and modifying enzymes.
REACT_199046. Assembly of collagen fibrils and other multimeric structures.
REACT_199055. Collagen degradation.
REACT_206066. Extracellular matrix organization.
REACT_216309. Integrin cell surface interactions.

Miscellaneous databases

ChiTaRSi COL5A3. mouse.
NextBioi 310709.
PROi Q9JLI2.
SOURCEi Search...

Gene expression databases

Genevestigatori Q9JLI2.

Family and domain databases

Gene3Di 2.60.120.200. 1 hit.
InterProi IPR008160. Collagen.
IPR008985. ConA-like_lec_gl_sf.
IPR013320. ConA-like_subgrp.
IPR000885. Fib_collagen_C.
IPR001791. Laminin_G.
[Graphical view ]
Pfami PF01410. COLFI. 1 hit.
PF01391. Collagen. 7 hits.
PF02210. Laminin_G_2. 1 hit.
[Graphical view ]
ProDomi PD002078. Fib_collagen_C. 1 hit.
[Graphical view ] [Entries sharing at least one domain ]
SMARTi SM00038. COLFI. 1 hit.
SM00282. LamG. 1 hit.
SM00210. TSPN. 1 hit.
[Graphical view ]
SUPFAMi SSF49899. SSF49899. 1 hit.
PROSITEi PS50025. LAM_G_DOMAIN. 1 hit.
PS51461. NC1_FIB. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "The pro-alpha3 (V) collagen chain. Complete primary structure, expression domains in adult and developing tissues, and comparison to the structures and expression domains of the other types V and XI procollagen chains."
    Imamura Y., Scott I.C., Greenspan D.S.
    J. Biol. Chem. 275:8749-8759(2000) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
    Tissue: BrainImported.
  2. "A comparison of whole-genome shotgun-derived mouse chromosome 16 and the human genome."
    Mural R.J., Adams M.D., Myers E.W., Smith H.O., Miklos G.L., Wides R., Halpern A., Li P.W., Sutton G.G., Nadeau J., Salzberg S.L., Holt R.A., Kodira C.D., Lu F., Chen L., Deng Z., Evangelista C.C., Gan W.
    , Heiman T.J., Li J., Li Z., Merkulov G.V., Milshina N.V., Naik A.K., Qi R., Shue B.C., Wang A., Wang J., Wang X., Yan X., Ye J., Yooseph S., Zhao Q., Zheng L., Zhu S.C., Biddick K., Bolanos R., Delcher A.L., Dew I.M., Fasulo D., Flanigan M.J., Huson D.H., Kravitz S.A., Miller J.R., Mobarry C.M., Reinert K., Remington K.A., Zhang Q., Zheng X.H., Nusskern D.R., Lai Z., Lei Y., Zhong W., Yao A., Guan P., Ji R.R., Gu Z., Wang Z.Y., Zhong F., Xiao C., Chiang C.C., Yandell M., Wortman J.R., Amanatides P.G., Hladun S.L., Pratts E.C., Johnson J.E., Dodson K.L., Woodford K.J., Evans C.A., Gropman B., Rusch D.B., Venter E., Wang M., Smith T.J., Houck J.T., Tompkins D.E., Haynes C., Jacob D., Chin S.H., Allen D.R., Dahlke C.E., Sanders R., Li K., Liu X., Levitsky A.A., Majoros W.H., Chen Q., Xia A.C., Lopez J.R., Donnelly M.T., Newman M.H., Glodek A., Kraft C.L., Nodell M., Ali F., An H.J., Baldwin-Pitts D., Beeson K.Y., Cai S., Carnes M., Carver A., Caulk P.M., Center A., Chen Y.H., Cheng M.L., Coyne M.D., Crowder M., Danaher S., Davenport L.B., Desilets R., Dietz S.M., Doup L., Dullaghan P., Ferriera S., Fosler C.R., Gire H.C., Gluecksmann A., Gocayne J.D., Gray J., Hart B., Haynes J., Hoover J., Howland T., Ibegwam C., Jalali M., Johns D., Kline L., Ma D.S., MacCawley S., Magoon A., Mann F., May D., McIntosh T.C., Mehta S., Moy L., Moy M.C., Murphy B.J., Murphy S.D., Nelson K.A., Nuri Z., Parker K.A., Prudhomme A.C., Puri V.N., Qureshi H., Raley J.C., Reardon M.S., Regier M.A., Rogers Y.H., Romblad D.L., Schutz J., Scott J.L., Scott R., Sitter C.D., Smallwood M., Sprague A.C., Stewart E., Strong R.V., Suh E., Sylvester K., Thomas R., Tint N.N., Tsonis C., Wang G., Wang G., Williams M.S., Williams S.M., Windsor S.M., Wolfe K., Wu M.M., Zaveri J., Chaturvedi K., Gabrielian A.E., Ke Z., Sun J., Subramanian G., Venter J.C., Pfannkoch C.M., Barnstead M., Stephenson L.D.
    Science 296:1661-1671(2002) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: MixedImported.
  3. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
    The MGC Project Team
    Gerhard D.S., Wagner L., Feingold E.A., Shenmen C.M., Grouse L.H., Schuler G., Klein S.L., Old S., Rasooly R., Good P., Guyer M., Peck A.M., Derge J.G., Lipman D., Collins F.S., Jang W., Sherry S., Feolo M.
    , Misquitta L., Lee E., Rotmistrovsky K., Greenhut S.F., Schaefer C.F., Buetow K., Bonner T.I., Haussler D., Kent J., Kiekhaus M., Furey T., Brent M., Prange C., Schreiber K., Shapiro N., Bhat N.K., Hopkins R.F., Hsie F., Driscoll T., Soares M.B., Casavant T.L., Scheetz T.E., Brown-stein M.J., Usdin T.B., Toshiyuki S., Carninci P., Piao Y., Dudekula D.B., Ko M.S., Kawakami K., Suzuki Y., Sugano S., Gruber C.E., Smith M.R., Simmons B., Moore T., Waterman R., Johnson S.L., Ruan Y., Wei C.L., Mathavan S., Gunaratne P.H., Wu J., Garcia A.M., Hulyk S.W., Fuh E., Yuan Y., Sneed A., Kowis C., Hodgson A., Muzny D.M., McPherson J., Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., Sanchez A., Whiting M., Madari A., Young A.C., Wetherby K.D., Granite S.J., Kwong P.N., Brinkley C.P., Pearson R.L., Bouffard G.G., Blakesly R.W., Green E.D., Dickson M.C., Rodriguez A.C., Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Griffith M., Griffith O.L., Krzywinski M.I., Liao N., Morin R., Morrin R., Palmquist D., Petrescu A.S., Skalska U., Smailus D.E., Stott J.M., Schnerch A., Schein J.E., Jones S.J., Holt R.A., Baross A., Marra M.A., Clifton S., Makowski K.A., Bosak S., Malek J.
    Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Tissue: BrainImported.
  4. Mural R.J., Adams M.D., Myers E.W., Smith H.O., Venter J.C.
    Submitted (JUL-2005) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: MixedImported.
  5. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: C57BL/6JImported.
  6. Ensembl
    Submitted (FEB-2012) to UniProtKB
    Cited for: IDENTIFICATION.
    Strain: C57BL/6JImported.

Entry informationi

Entry nameiQ9JLI2_MOUSE
AccessioniPrimary (citable) accession number: Q9JLI2
Entry historyi
Integrated into UniProtKB/TrEMBL: October 1, 2000
Last sequence update: October 1, 2000
Last modified: September 3, 2014
This is version 107 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

External Data

Dasty 3

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