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Q9JLI2 (Q9JLI2_MOUSE) Unreviewed, UniProtKB/TrEMBL

Last modified July 9, 2014. Version 106. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names

Collagen, type V, alpha 3 EMBL AAI38418.1

Procollagen, type V, alpha 3, isoform CRA_b EMBL EDL25130.1

Protein Col5a3 Ensembl ENSMUSP00000004201
Gene names
Name:Col5a3 MGI 1858212 EMBL AAI38418.1 Ensembl ENSMUSP00000004201
ORF Names:mCG_67925 EMBL EDL25130.1
OrganismMus musculus (Mouse) [Reference proteome] EMBL AAF59901.1
Taxonomic identifier10090 [NCBI]
Taxonomic lineageEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus

Protein attributes

Sequence length1739 AA.
Sequence statusComplete.
Protein existenceEvidence at transcript level

Sequences

Sequence LengthMass (Da)Tools
Q9JLI2 [UniParc].

Last modified October 1, 2000. Version 1.
Checksum: EFBDFEBA46E69984

FASTA1,739171,969
        10         20         30         40         50         60 
MRSCRRLDQL QAGLCLLLAS LQLVSWTLAA EPVDVLEAWG VHRDQAGVAE GPGFCPLRIP 

        70         80         90        100        110        120 
QGDRAFRVGK SSLLSVPTWQ LFPDGHFPEN FSVLLTLRAQ PANQSVLLSI YDEKGVRQLG 

       130        140        150        160        170        180 
LALGPALGLL GDSFRPLPKQ VNIMDGRWHR VAVSISGNKV TLVVDCEPQP PTFGQGPRFI 

       190        200        210        220        230        240 
STAGLTVMGT QDTREESFEG DIQELLLIPD PQAAFQACES YLPGCETLDS TTTGAPKDDE 

       250        260        270        280        290        300 
PETPAPRRRK GKGKKKGRGR KGKGRKKNKE TSELSPTPGA PENQTSLHIP ETEKTVPHLP 

       310        320        330        340        350        360 
LTPTPLAITT TVTIGQNATV SQGLDSGTET EQTTPEVDST EEGEGGGPTM GPKFRAAEQS 

       370        380        390        400        410        420 
LQTEFQIFPG AGEKGAKGEP ATVEQGQQFE GPAGAPGPRG ISGPSGPPGP PGFPGDRGLP 

       430        440        450        460        470        480 
GPAGLPGIPG IDGARGLPGT VIMMPFHFAS SSMKGPPVSF QQAQAQAVLQ QAQLSMKGPP 

       490        500        510        520        530        540 
GPVGLTGRPG PVGLPGYPGL KGELGEVGPQ GPRGLQGPPG PPGREGKTGR AGADGARGLP 

       550        560        570        580        590        600 
GDTGPKGDRG FDGLPGLPGE KGQRGDFGRV GQPGPPGEDG VKGLQGPPGP TGQAGEPGPR 

       610        620        630        640        650        660 
GLIGPRGLPG PLGRPGVTGS DGAPGAKGNV GPPGEPGPPG QQGNHGSQGI PGPQGPIGTP 

       670        680        690        700        710        720 
GEKGPPGNPG IPGVPGSEGP PGHPGHEGPT GEKGAQGPPG SAGPRGYPGL RGVKGTSGNR 

       730        740        750        760        770        780 
GLQGEKGERG EDGFPGFKGD EGPKGDRGNP GPPGPRGEDG PEGQKGPGGL PGDEGPPGAA 

       790        800        810        820        830        840 
GEKGKLGVPG LPGYPGRPGP KGSIGFPGPL GPLGEKGKRG KAGQPGEEGE RGTPGTRGDR 

       850        860        870        880        890        900 
GQPGATGQPG PKGDVGQNGS PGPPGEKGLP GLQGPPGFPG PKGPPGPQGK DGISGHPGQR 

       910        920        930        940        950        960 
GELGFQGLTG PPGPAGVLGP QGKVGDVGPL GERGPPGPPG PPGEQGLPGI EGREGAKGEL 

       970        980        990       1000       1010       1020 
GPLGSVGKEG PPGPRGFPGP QGAPGDPGPI GLKGDKGPPG PVGANGSPGE RGPVGPSGGI 

      1030       1040       1050       1060       1070       1080 
GLPGQSGGQG PIGPAGEKGS PGERGTPGPT GKDGIPGPPG LQGPSGAAGP SGEEGDKGEV 

      1090       1100       1110       1120       1130       1140 
GMPGHKGSKG DKGDAGPPGP TGIRGPAGHS GLPGADGAQG RRGPPGLFGQ KGDDGVRGFV 

      1150       1160       1170       1180       1190       1200 
GVIGPPGLQG LPGPPGEKGE VGDVGSMGPH GAPGPRGPPG PSGSEGPPGL PGGVGQPGAV 

      1210       1220       1230       1240       1250       1260 
GEKGEPGDAG DAGPPGIPGI PGPKGEIGEK GDSGPSGAAG PPGKKGPPGE DGSKGNMGPT 

      1270       1280       1290       1300       1310       1320 
GLPGDLGPPG DPGVPGIDGI PGEKGNAGDI GGPGPPGASG EPGARGLPGK RGSPGRMGPE 

      1330       1340       1350       1360       1370       1380 
GREGEKGAKG DAGPDGPPGR TGPIGARGPP GRIGPDGLPG IPGPVGEPGL LGPPGLIGPP 

      1390       1400       1410       1420       1430       1440 
GPLGPPGLPG LKGDAGPKGE KGHIGLIGLI GPPGEAGEKG DQGLPGVQGP PGLQGDPGLP 

      1450       1460       1470       1480       1490       1500 
GPVGSLGHPG PPGVVGPLGQ KGSKGSPGSL GPRGDPGPAG PPGPPGSPAE VHGLRRRRSV 

      1510       1520       1530       1540       1550       1560 
TDTLEGGLEE VMASLNSLSL ELQQLQRPLG TAESPGLMCR ELHRDHPHLP DGEYWIDPNQ 

      1570       1580       1590       1600       1610       1620 
GCARDAFKVF CNFTAGGETC LYPDKKFETV KLASWSREKP GGWYSTFRRG KKFSYVDADG 

      1630       1640       1650       1660       1670       1680 
SPVNVVQLTF LKLLSAAAHQ RFTYICQNSV AWLDEAAGDH RHSIRFQGTN WEELSFNQTT 

      1690       1700       1710       1720       1730 
AATIKVSHDG CRVRKGQAKT LFEFSSSVGF LPLWDVAASD FGQTNQKFGF ELGSICFSS 

« Hide

References

« Hide 'large scale' references
[1]"The pro-alpha3 (V) collagen chain. Complete primary structure, expression domains in adult and developing tissues, and comparison to the structures and expression domains of the other types V and XI procollagen chains."
Imamura Y., Scott I.C., Greenspan D.S.
J. Biol. Chem. 275:8749-8759(2000) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Tissue: Brain EMBL AAF59901.1.
[2]"A comparison of whole-genome shotgun-derived mouse chromosome 16 and the human genome."
Mural R.J., Adams M.D., Myers E.W., Smith H.O., Miklos G.L., Wides R., Halpern A., Li P.W., Sutton G.G., Nadeau J., Salzberg S.L., Holt R.A., Kodira C.D., Lu F., Chen L., Deng Z., Evangelista C.C., Gan W. expand/collapse author list , Heiman T.J., Li J., Li Z., Merkulov G.V., Milshina N.V., Naik A.K., Qi R., Shue B.C., Wang A., Wang J., Wang X., Yan X., Ye J., Yooseph S., Zhao Q., Zheng L., Zhu S.C., Biddick K., Bolanos R., Delcher A.L., Dew I.M., Fasulo D., Flanigan M.J., Huson D.H., Kravitz S.A., Miller J.R., Mobarry C.M., Reinert K., Remington K.A., Zhang Q., Zheng X.H., Nusskern D.R., Lai Z., Lei Y., Zhong W., Yao A., Guan P., Ji R.R., Gu Z., Wang Z.Y., Zhong F., Xiao C., Chiang C.C., Yandell M., Wortman J.R., Amanatides P.G., Hladun S.L., Pratts E.C., Johnson J.E., Dodson K.L., Woodford K.J., Evans C.A., Gropman B., Rusch D.B., Venter E., Wang M., Smith T.J., Houck J.T., Tompkins D.E., Haynes C., Jacob D., Chin S.H., Allen D.R., Dahlke C.E., Sanders R., Li K., Liu X., Levitsky A.A., Majoros W.H., Chen Q., Xia A.C., Lopez J.R., Donnelly M.T., Newman M.H., Glodek A., Kraft C.L., Nodell M., Ali F., An H.J., Baldwin-Pitts D., Beeson K.Y., Cai S., Carnes M., Carver A., Caulk P.M., Center A., Chen Y.H., Cheng M.L., Coyne M.D., Crowder M., Danaher S., Davenport L.B., Desilets R., Dietz S.M., Doup L., Dullaghan P., Ferriera S., Fosler C.R., Gire H.C., Gluecksmann A., Gocayne J.D., Gray J., Hart B., Haynes J., Hoover J., Howland T., Ibegwam C., Jalali M., Johns D., Kline L., Ma D.S., MacCawley S., Magoon A., Mann F., May D., McIntosh T.C., Mehta S., Moy L., Moy M.C., Murphy B.J., Murphy S.D., Nelson K.A., Nuri Z., Parker K.A., Prudhomme A.C., Puri V.N., Qureshi H., Raley J.C., Reardon M.S., Regier M.A., Rogers Y.H., Romblad D.L., Schutz J., Scott J.L., Scott R., Sitter C.D., Smallwood M., Sprague A.C., Stewart E., Strong R.V., Suh E., Sylvester K., Thomas R., Tint N.N., Tsonis C., Wang G., Wang G., Williams M.S., Williams S.M., Windsor S.M., Wolfe K., Wu M.M., Zaveri J., Chaturvedi K., Gabrielian A.E., Ke Z., Sun J., Subramanian G., Venter J.C., Pfannkoch C.M., Barnstead M., Stephenson L.D.
Science 296:1661-1671(2002) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: Mixed EMBL EDL25130.1.
[3]"The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
The MGC Project Team
Gerhard D.S., Wagner L., Feingold E.A., Shenmen C.M., Grouse L.H., Schuler G., Klein S.L., Old S., Rasooly R., Good P., Guyer M., Peck A.M., Derge J.G., Lipman D., Collins F.S., Jang W., Sherry S., Feolo M. expand/collapse author list , Misquitta L., Lee E., Rotmistrovsky K., Greenhut S.F., Schaefer C.F., Buetow K., Bonner T.I., Haussler D., Kent J., Kiekhaus M., Furey T., Brent M., Prange C., Schreiber K., Shapiro N., Bhat N.K., Hopkins R.F., Hsie F., Driscoll T., Soares M.B., Casavant T.L., Scheetz T.E., Brown-stein M.J., Usdin T.B., Toshiyuki S., Carninci P., Piao Y., Dudekula D.B., Ko M.S., Kawakami K., Suzuki Y., Sugano S., Gruber C.E., Smith M.R., Simmons B., Moore T., Waterman R., Johnson S.L., Ruan Y., Wei C.L., Mathavan S., Gunaratne P.H., Wu J., Garcia A.M., Hulyk S.W., Fuh E., Yuan Y., Sneed A., Kowis C., Hodgson A., Muzny D.M., McPherson J., Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., Sanchez A., Whiting M., Madari A., Young A.C., Wetherby K.D., Granite S.J., Kwong P.N., Brinkley C.P., Pearson R.L., Bouffard G.G., Blakesly R.W., Green E.D., Dickson M.C., Rodriguez A.C., Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Griffith M., Griffith O.L., Krzywinski M.I., Liao N., Morin R., Morrin R., Palmquist D., Petrescu A.S., Skalska U., Smailus D.E., Stott J.M., Schnerch A., Schein J.E., Jones S.J., Holt R.A., Baross A., Marra M.A., Clifton S., Makowski K.A., Bosak S., Malek J.
Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
Tissue: Brain EMBL AAI38418.1.
[4]Mural R.J., Adams M.D., Myers E.W., Smith H.O., Venter J.C.
Submitted (JUL-2005) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
Strain: Mixed EMBL EDL25130.1.
[5]"Lineage-specific biology revealed by a finished genome assembly of the mouse."
Church D.M., Goodstadt L., Hillier L.W., Zody M.C., Goldstein S., She X., Bult C.J., Agarwala R., Cherry J.L., DiCuccio M., Hlavina W., Kapustin Y., Meric P., Maglott D., Birtle Z., Marques A.C., Graves T., Zhou S. expand/collapse author list , Teague B., Potamousis K., Churas C., Place M., Herschleb J., Runnheim R., Forrest D., Amos-Landgraf J., Schwartz D.C., Cheng Z., Lindblad-Toh K., Eichler E.E., Ponting C.P.
PLoS Biol. 7:E1000112-E1000112(2009) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: C57BL/6J Ensembl ENSMUSP00000004201.
[6]Ensembl
Submitted (FEB-2012) to UniProtKB
Cited for: IDENTIFICATION.
Strain: C57BL/6J Ensembl ENSMUSP00000004201.
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AC166365 Genomic DNA. No translation available.
AF176645 mRNA. Translation: AAF59901.1.
BC138417 mRNA. Translation: AAI38418.1.
BC138419 mRNA. Translation: AAI38420.1.
CH466522 Genomic DNA. Translation: EDL25130.1.
RefSeqNP_058615.1. NM_016919.2.
UniGeneMm.334994.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblENSMUST00000004201; ENSMUSP00000004201; ENSMUSG00000004098.
GeneID53867.
KEGGmmu:53867.
UCSCuc009ojf.1. mouse.

Organism-specific databases

CTD50509.
MGIMGI:1858212. Col5a3.

Phylogenomic databases

GeneTreeENSGT00710000106385.
HOGENOMHOG000085654.
HOVERGENHBG004933.
InParanoidQ9JLI2.
KOK06236.
OMAKGDVGQD.
OrthoDBEOG7XPZ4W.
TreeFamTF323987.

Gene expression databases

GenevestigatorQ9JLI2.

Family and domain databases

Gene3D2.60.120.200. 1 hit.
InterProIPR008160. Collagen.
IPR008985. ConA-like_lec_gl_sf.
IPR013320. ConA-like_subgrp.
IPR000885. Fib_collagen_C.
IPR001791. Laminin_G.
[Graphical view]
PfamPF01410. COLFI. 1 hit.
PF01391. Collagen. 7 hits.
PF02210. Laminin_G_2. 1 hit.
[Graphical view]
ProDomPD002078. Fib_collagen_C. 1 hit.
[Graphical view] [Entries sharing at least one domain]
SMARTSM00038. COLFI. 1 hit.
SM00282. LamG. 1 hit.
SM00210. TSPN. 1 hit.
[Graphical view]
SUPFAMSSF49899. SSF49899. 1 hit.
PROSITEPS50025. LAM_G_DOMAIN. 1 hit.
PS51461. NC1_FIB. 1 hit.
[Graphical view]
ProtoNetSearch...

Other

ChiTaRSCOL5A3. mouse.
NextBio310709.
PROQ9JLI2.
SOURCESearch...

Entry information

Entry nameQ9JLI2_MOUSE
AccessionPrimary (citable) accession number: Q9JLI2
Entry history
Integrated into UniProtKB/TrEMBL: October 1, 2000
Last sequence update: October 1, 2000
Last modified: July 9, 2014
This is version 106 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)