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Q9JLI2

- Q9JLI2_MOUSE

UniProt

Q9JLI2 - Q9JLI2_MOUSE

Protein
Submitted name:

Collagen type V alpha 3 chain

Gene

Col5a3

Organism
Mus musculus (Mouse)
Status
Unreviewed - Annotation score: 2 out of 5- Experimental evidence at transcript leveli
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    • History
      Entry version 108 (01 Oct 2014)
      Sequence version 1 (01 Oct 2000)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. extracellular matrix structural constituent Source: InterPro
    2. heparin binding Source: MGI
    3. structural molecule activity Source: MGI

    GO - Biological processi

    1. cell-matrix adhesion Source: MGI
    2. extracellular matrix organization Source: MGI

    Enzyme and pathway databases

    ReactomeiREACT_196606. ECM proteoglycans.
    REACT_196607. Non-integrin membrane-ECM interactions.
    REACT_196644. Syndecan interactions.
    REACT_198984. Collagen biosynthesis and modifying enzymes.
    REACT_199046. Assembly of collagen fibrils and other multimeric structures.
    REACT_199055. Collagen degradation.
    REACT_206066. Extracellular matrix organization.
    REACT_216309. Integrin cell surface interactions.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    Collagen type V alpha 3 chainImported
    Submitted name:
    Collagen, type V, alpha 3Imported
    Submitted name:
    Procollagen, type V, alpha 3, isoform CRA_bImported
    Submitted name:
    Protein Col5a3Imported
    Gene namesi
    Name:Col5a3Imported
    ORF Names:mCG_67925Imported
    OrganismiMus musculus (Mouse)Imported
    Taxonomic identifieri10090 [NCBI]
    Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus
    ProteomesiUP000000589: Chromosome 9

    Organism-specific databases

    MGIiMGI:1858212. Col5a3.

    Subcellular locationi

    GO - Cellular componenti

    1. collagen type V trimer Source: MGI

    Expressioni

    Gene expression databases

    GenevestigatoriQ9JLI2.

    Family & Domainsi

    Keywords - Domaini

    CollagenImported

    Phylogenomic databases

    GeneTreeiENSGT00710000106385.
    HOGENOMiHOG000085654.
    HOVERGENiHBG004933.
    InParanoidiQ9JLI2.
    KOiK06236.
    OMAiKGDVGQD.
    OrthoDBiEOG7XPZ4W.
    TreeFamiTF323987.

    Family and domain databases

    Gene3Di2.60.120.200. 1 hit.
    InterProiIPR008160. Collagen.
    IPR008985. ConA-like_lec_gl_sf.
    IPR013320. ConA-like_subgrp.
    IPR000885. Fib_collagen_C.
    IPR001791. Laminin_G.
    [Graphical view]
    PfamiPF01410. COLFI. 1 hit.
    PF01391. Collagen. 7 hits.
    PF02210. Laminin_G_2. 1 hit.
    [Graphical view]
    ProDomiPD002078. Fib_collagen_C. 1 hit.
    [Graphical view] [Entries sharing at least one domain]
    SMARTiSM00038. COLFI. 1 hit.
    SM00282. LamG. 1 hit.
    SM00210. TSPN. 1 hit.
    [Graphical view]
    SUPFAMiSSF49899. SSF49899. 1 hit.
    PROSITEiPS50025. LAM_G_DOMAIN. 1 hit.
    PS51461. NC1_FIB. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Q9JLI2-1 [UniParc]FASTAAdd to Basket

    « Hide

    MRSCRRLDQL QAGLCLLLAS LQLVSWTLAA EPVDVLEAWG VHRDQAGVAE     50
    GPGFCPLRIP QGDRAFRVGK SSLLSVPTWQ LFPDGHFPEN FSVLLTLRAQ 100
    PANQSVLLSI YDEKGVRQLG LALGPALGLL GDSFRPLPKQ VNIMDGRWHR 150
    VAVSISGNKV TLVVDCEPQP PTFGQGPRFI STAGLTVMGT QDTREESFEG 200
    DIQELLLIPD PQAAFQACES YLPGCETLDS TTTGAPKDDE PETPAPRRRK 250
    GKGKKKGRGR KGKGRKKNKE TSELSPTPGA PENQTSLHIP ETEKTVPHLP 300
    LTPTPLAITT TVTIGQNATV SQGLDSGTET EQTTPEVDST EEGEGGGPTM 350
    GPKFRAAEQS LQTEFQIFPG AGEKGAKGEP ATVEQGQQFE GPAGAPGPRG 400
    ISGPSGPPGP PGFPGDRGLP GPAGLPGIPG IDGARGLPGT VIMMPFHFAS 450
    SSMKGPPVSF QQAQAQAVLQ QAQLSMKGPP GPVGLTGRPG PVGLPGYPGL 500
    KGELGEVGPQ GPRGLQGPPG PPGREGKTGR AGADGARGLP GDTGPKGDRG 550
    FDGLPGLPGE KGQRGDFGRV GQPGPPGEDG VKGLQGPPGP TGQAGEPGPR 600
    GLIGPRGLPG PLGRPGVTGS DGAPGAKGNV GPPGEPGPPG QQGNHGSQGI 650
    PGPQGPIGTP GEKGPPGNPG IPGVPGSEGP PGHPGHEGPT GEKGAQGPPG 700
    SAGPRGYPGL RGVKGTSGNR GLQGEKGERG EDGFPGFKGD EGPKGDRGNP 750
    GPPGPRGEDG PEGQKGPGGL PGDEGPPGAA GEKGKLGVPG LPGYPGRPGP 800
    KGSIGFPGPL GPLGEKGKRG KAGQPGEEGE RGTPGTRGDR GQPGATGQPG 850
    PKGDVGQNGS PGPPGEKGLP GLQGPPGFPG PKGPPGPQGK DGISGHPGQR 900
    GELGFQGLTG PPGPAGVLGP QGKVGDVGPL GERGPPGPPG PPGEQGLPGI 950
    EGREGAKGEL GPLGSVGKEG PPGPRGFPGP QGAPGDPGPI GLKGDKGPPG 1000
    PVGANGSPGE RGPVGPSGGI GLPGQSGGQG PIGPAGEKGS PGERGTPGPT 1050
    GKDGIPGPPG LQGPSGAAGP SGEEGDKGEV GMPGHKGSKG DKGDAGPPGP 1100
    TGIRGPAGHS GLPGADGAQG RRGPPGLFGQ KGDDGVRGFV GVIGPPGLQG 1150
    LPGPPGEKGE VGDVGSMGPH GAPGPRGPPG PSGSEGPPGL PGGVGQPGAV 1200
    GEKGEPGDAG DAGPPGIPGI PGPKGEIGEK GDSGPSGAAG PPGKKGPPGE 1250
    DGSKGNMGPT GLPGDLGPPG DPGVPGIDGI PGEKGNAGDI GGPGPPGASG 1300
    EPGARGLPGK RGSPGRMGPE GREGEKGAKG DAGPDGPPGR TGPIGARGPP 1350
    GRIGPDGLPG IPGPVGEPGL LGPPGLIGPP GPLGPPGLPG LKGDAGPKGE 1400
    KGHIGLIGLI GPPGEAGEKG DQGLPGVQGP PGLQGDPGLP GPVGSLGHPG 1450
    PPGVVGPLGQ KGSKGSPGSL GPRGDPGPAG PPGPPGSPAE VHGLRRRRSV 1500
    TDTLEGGLEE VMASLNSLSL ELQQLQRPLG TAESPGLMCR ELHRDHPHLP 1550
    DGEYWIDPNQ GCARDAFKVF CNFTAGGETC LYPDKKFETV KLASWSREKP 1600
    GGWYSTFRRG KKFSYVDADG SPVNVVQLTF LKLLSAAAHQ RFTYICQNSV 1650
    AWLDEAAGDH RHSIRFQGTN WEELSFNQTT AATIKVSHDG CRVRKGQAKT 1700
    LFEFSSSVGF LPLWDVAASD FGQTNQKFGF ELGSICFSS 1739
    Length:1,739
    Mass (Da):171,969
    Last modified:October 1, 2000 - v1
    Checksum:iEFBDFEBA46E69984
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AC166365 Genomic DNA. No translation available.
    AF176645 mRNA. Translation: AAF59901.1.
    BC138417 mRNA. Translation: AAI38418.1.
    BC138419 mRNA. Translation: AAI38420.1.
    CH466522 Genomic DNA. Translation: EDL25130.1.
    RefSeqiNP_058615.1. NM_016919.2.
    UniGeneiMm.334994.

    Genome annotation databases

    EnsembliENSMUST00000004201; ENSMUSP00000004201; ENSMUSG00000004098.
    GeneIDi53867.
    KEGGimmu:53867.
    UCSCiuc009ojf.1. mouse.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AC166365 Genomic DNA. No translation available.
    AF176645 mRNA. Translation: AAF59901.1 .
    BC138417 mRNA. Translation: AAI38418.1 .
    BC138419 mRNA. Translation: AAI38420.1 .
    CH466522 Genomic DNA. Translation: EDL25130.1 .
    RefSeqi NP_058615.1. NM_016919.2.
    UniGenei Mm.334994.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    Ensembli ENSMUST00000004201 ; ENSMUSP00000004201 ; ENSMUSG00000004098 .
    GeneIDi 53867.
    KEGGi mmu:53867.
    UCSCi uc009ojf.1. mouse.

    Organism-specific databases

    CTDi 50509.
    MGIi MGI:1858212. Col5a3.

    Phylogenomic databases

    GeneTreei ENSGT00710000106385.
    HOGENOMi HOG000085654.
    HOVERGENi HBG004933.
    InParanoidi Q9JLI2.
    KOi K06236.
    OMAi KGDVGQD.
    OrthoDBi EOG7XPZ4W.
    TreeFami TF323987.

    Enzyme and pathway databases

    Reactomei REACT_196606. ECM proteoglycans.
    REACT_196607. Non-integrin membrane-ECM interactions.
    REACT_196644. Syndecan interactions.
    REACT_198984. Collagen biosynthesis and modifying enzymes.
    REACT_199046. Assembly of collagen fibrils and other multimeric structures.
    REACT_199055. Collagen degradation.
    REACT_206066. Extracellular matrix organization.
    REACT_216309. Integrin cell surface interactions.

    Miscellaneous databases

    ChiTaRSi COL5A3. mouse.
    NextBioi 310709.
    PROi Q9JLI2.
    SOURCEi Search...

    Gene expression databases

    Genevestigatori Q9JLI2.

    Family and domain databases

    Gene3Di 2.60.120.200. 1 hit.
    InterProi IPR008160. Collagen.
    IPR008985. ConA-like_lec_gl_sf.
    IPR013320. ConA-like_subgrp.
    IPR000885. Fib_collagen_C.
    IPR001791. Laminin_G.
    [Graphical view ]
    Pfami PF01410. COLFI. 1 hit.
    PF01391. Collagen. 7 hits.
    PF02210. Laminin_G_2. 1 hit.
    [Graphical view ]
    ProDomi PD002078. Fib_collagen_C. 1 hit.
    [Graphical view ] [Entries sharing at least one domain ]
    SMARTi SM00038. COLFI. 1 hit.
    SM00282. LamG. 1 hit.
    SM00210. TSPN. 1 hit.
    [Graphical view ]
    SUPFAMi SSF49899. SSF49899. 1 hit.
    PROSITEi PS50025. LAM_G_DOMAIN. 1 hit.
    PS51461. NC1_FIB. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "The pro-alpha3 (V) collagen chain. Complete primary structure, expression domains in adult and developing tissues, and comparison to the structures and expression domains of the other types V and XI procollagen chains."
      Imamura Y., Scott I.C., Greenspan D.S.
      J. Biol. Chem. 275:8749-8759(2000) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE.
      Tissue: BrainImported.
    2. "A comparison of whole-genome shotgun-derived mouse chromosome 16 and the human genome."
      Mural R.J., Adams M.D., Myers E.W., Smith H.O., Miklos G.L., Wides R., Halpern A., Li P.W., Sutton G.G., Nadeau J., Salzberg S.L., Holt R.A., Kodira C.D., Lu F., Chen L., Deng Z., Evangelista C.C., Gan W.
      , Heiman T.J., Li J., Li Z., Merkulov G.V., Milshina N.V., Naik A.K., Qi R., Shue B.C., Wang A., Wang J., Wang X., Yan X., Ye J., Yooseph S., Zhao Q., Zheng L., Zhu S.C., Biddick K., Bolanos R., Delcher A.L., Dew I.M., Fasulo D., Flanigan M.J., Huson D.H., Kravitz S.A., Miller J.R., Mobarry C.M., Reinert K., Remington K.A., Zhang Q., Zheng X.H., Nusskern D.R., Lai Z., Lei Y., Zhong W., Yao A., Guan P., Ji R.R., Gu Z., Wang Z.Y., Zhong F., Xiao C., Chiang C.C., Yandell M., Wortman J.R., Amanatides P.G., Hladun S.L., Pratts E.C., Johnson J.E., Dodson K.L., Woodford K.J., Evans C.A., Gropman B., Rusch D.B., Venter E., Wang M., Smith T.J., Houck J.T., Tompkins D.E., Haynes C., Jacob D., Chin S.H., Allen D.R., Dahlke C.E., Sanders R., Li K., Liu X., Levitsky A.A., Majoros W.H., Chen Q., Xia A.C., Lopez J.R., Donnelly M.T., Newman M.H., Glodek A., Kraft C.L., Nodell M., Ali F., An H.J., Baldwin-Pitts D., Beeson K.Y., Cai S., Carnes M., Carver A., Caulk P.M., Center A., Chen Y.H., Cheng M.L., Coyne M.D., Crowder M., Danaher S., Davenport L.B., Desilets R., Dietz S.M., Doup L., Dullaghan P., Ferriera S., Fosler C.R., Gire H.C., Gluecksmann A., Gocayne J.D., Gray J., Hart B., Haynes J., Hoover J., Howland T., Ibegwam C., Jalali M., Johns D., Kline L., Ma D.S., MacCawley S., Magoon A., Mann F., May D., McIntosh T.C., Mehta S., Moy L., Moy M.C., Murphy B.J., Murphy S.D., Nelson K.A., Nuri Z., Parker K.A., Prudhomme A.C., Puri V.N., Qureshi H., Raley J.C., Reardon M.S., Regier M.A., Rogers Y.H., Romblad D.L., Schutz J., Scott J.L., Scott R., Sitter C.D., Smallwood M., Sprague A.C., Stewart E., Strong R.V., Suh E., Sylvester K., Thomas R., Tint N.N., Tsonis C., Wang G., Wang G., Williams M.S., Williams S.M., Windsor S.M., Wolfe K., Wu M.M., Zaveri J., Chaturvedi K., Gabrielian A.E., Ke Z., Sun J., Subramanian G., Venter J.C., Pfannkoch C.M., Barnstead M., Stephenson L.D.
      Science 296:1661-1671(2002) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE.
      Strain: MixedImported.
    3. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
      The MGC Project Team
      Gerhard D.S., Wagner L., Feingold E.A., Shenmen C.M., Grouse L.H., Schuler G., Klein S.L., Old S., Rasooly R., Good P., Guyer M., Peck A.M., Derge J.G., Lipman D., Collins F.S., Jang W., Sherry S., Feolo M.
      , Misquitta L., Lee E., Rotmistrovsky K., Greenhut S.F., Schaefer C.F., Buetow K., Bonner T.I., Haussler D., Kent J., Kiekhaus M., Furey T., Brent M., Prange C., Schreiber K., Shapiro N., Bhat N.K., Hopkins R.F., Hsie F., Driscoll T., Soares M.B., Casavant T.L., Scheetz T.E., Brown-stein M.J., Usdin T.B., Toshiyuki S., Carninci P., Piao Y., Dudekula D.B., Ko M.S., Kawakami K., Suzuki Y., Sugano S., Gruber C.E., Smith M.R., Simmons B., Moore T., Waterman R., Johnson S.L., Ruan Y., Wei C.L., Mathavan S., Gunaratne P.H., Wu J., Garcia A.M., Hulyk S.W., Fuh E., Yuan Y., Sneed A., Kowis C., Hodgson A., Muzny D.M., McPherson J., Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., Sanchez A., Whiting M., Madari A., Young A.C., Wetherby K.D., Granite S.J., Kwong P.N., Brinkley C.P., Pearson R.L., Bouffard G.G., Blakesly R.W., Green E.D., Dickson M.C., Rodriguez A.C., Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Griffith M., Griffith O.L., Krzywinski M.I., Liao N., Morin R., Morrin R., Palmquist D., Petrescu A.S., Skalska U., Smailus D.E., Stott J.M., Schnerch A., Schein J.E., Jones S.J., Holt R.A., Baross A., Marra M.A., Clifton S., Makowski K.A., Bosak S., Malek J.
      Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
      Tissue: BrainImported.
    4. Mural R.J., Adams M.D., Myers E.W., Smith H.O., Venter J.C.
      Submitted (JUL-2005) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE.
      Strain: MixedImported.
    5. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: C57BL/6JImported.
    6. Ensembl
      Submitted (FEB-2012) to UniProtKB
      Cited for: IDENTIFICATION.
      Strain: C57BL/6JImported.

    Entry informationi

    Entry nameiQ9JLI2_MOUSE
    AccessioniPrimary (citable) accession number: Q9JLI2
    Entry historyi
    Integrated into UniProtKB/TrEMBL: October 1, 2000
    Last sequence update: October 1, 2000
    Last modified: October 1, 2014
    This is version 108 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3