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Q9JLI2

- Q9JLI2_MOUSE

UniProt

Q9JLI2 - Q9JLI2_MOUSE

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Protein
Submitted name:

Collagen type V alpha 3 chain

Gene

Col5a3

Organism
Mus musculus (Mouse)
Status
Unreviewed - Annotation score: 2 out of 5- Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

  1. extracellular matrix structural constituent Source: InterPro
  2. heparin binding Source: MGI
  3. structural molecule activity Source: MGI

GO - Biological processi

  1. cell-matrix adhesion Source: MGI
  2. extracellular matrix organization Source: MGI
Complete GO annotation...

Enzyme and pathway databases

ReactomeiREACT_196606. ECM proteoglycans.
REACT_196607. Non-integrin membrane-ECM interactions.
REACT_196644. Syndecan interactions.
REACT_198984. Collagen biosynthesis and modifying enzymes.
REACT_199046. Assembly of collagen fibrils and other multimeric structures.
REACT_199055. Collagen degradation.
REACT_206066. Extracellular matrix organization.
REACT_216309. Integrin cell surface interactions.

Names & Taxonomyi

Protein namesi
Submitted name:
Collagen type V alpha 3 chainImported
Submitted name:
Collagen, type V, alpha 3Imported
Submitted name:
Procollagen, type V, alpha 3, isoform CRA_bImported
Submitted name:
Protein Col5a3Imported
Gene namesi
Name:Col5a3Imported
ORF Names:mCG_67925Imported
OrganismiMus musculus (Mouse)Imported
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus
ProteomesiUP000000589: Chromosome 9

Organism-specific databases

MGIiMGI:1858212. Col5a3.

Subcellular locationi

GO - Cellular componenti

  1. collagen type V trimer Source: MGI
  2. extracellular vesicular exosome Source: Ensembl
Complete GO annotation...

Expressioni

Gene expression databases

GenevestigatoriQ9JLI2.

Family & Domainsi

Keywords - Domaini

CollagenImported

Phylogenomic databases

GeneTreeiENSGT00760000118776.
HOGENOMiHOG000085654.
HOVERGENiHBG004933.
KOiK06236.
OMAiKGDVGQD.
OrthoDBiEOG7XPZ4W.
TreeFamiTF323987.

Family and domain databases

Gene3Di2.60.120.200. 1 hit.
InterProiIPR008160. Collagen.
IPR013320. ConA-like_dom.
IPR000885. Fib_collagen_C.
IPR001791. Laminin_G.
[Graphical view]
PfamiPF01410. COLFI. 1 hit.
PF01391. Collagen. 7 hits.
PF02210. Laminin_G_2. 1 hit.
[Graphical view]
ProDomiPD002078. Fib_collagen_C. 1 hit.
[Graphical view] [Entries sharing at least one domain]
SMARTiSM00038. COLFI. 1 hit.
SM00282. LamG. 1 hit.
SM00210. TSPN. 1 hit.
[Graphical view]
SUPFAMiSSF49899. SSF49899. 1 hit.
PROSITEiPS50025. LAM_G_DOMAIN. 1 hit.
PS51461. NC1_FIB. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q9JLI2-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MRSCRRLDQL QAGLCLLLAS LQLVSWTLAA EPVDVLEAWG VHRDQAGVAE
60 70 80 90 100
GPGFCPLRIP QGDRAFRVGK SSLLSVPTWQ LFPDGHFPEN FSVLLTLRAQ
110 120 130 140 150
PANQSVLLSI YDEKGVRQLG LALGPALGLL GDSFRPLPKQ VNIMDGRWHR
160 170 180 190 200
VAVSISGNKV TLVVDCEPQP PTFGQGPRFI STAGLTVMGT QDTREESFEG
210 220 230 240 250
DIQELLLIPD PQAAFQACES YLPGCETLDS TTTGAPKDDE PETPAPRRRK
260 270 280 290 300
GKGKKKGRGR KGKGRKKNKE TSELSPTPGA PENQTSLHIP ETEKTVPHLP
310 320 330 340 350
LTPTPLAITT TVTIGQNATV SQGLDSGTET EQTTPEVDST EEGEGGGPTM
360 370 380 390 400
GPKFRAAEQS LQTEFQIFPG AGEKGAKGEP ATVEQGQQFE GPAGAPGPRG
410 420 430 440 450
ISGPSGPPGP PGFPGDRGLP GPAGLPGIPG IDGARGLPGT VIMMPFHFAS
460 470 480 490 500
SSMKGPPVSF QQAQAQAVLQ QAQLSMKGPP GPVGLTGRPG PVGLPGYPGL
510 520 530 540 550
KGELGEVGPQ GPRGLQGPPG PPGREGKTGR AGADGARGLP GDTGPKGDRG
560 570 580 590 600
FDGLPGLPGE KGQRGDFGRV GQPGPPGEDG VKGLQGPPGP TGQAGEPGPR
610 620 630 640 650
GLIGPRGLPG PLGRPGVTGS DGAPGAKGNV GPPGEPGPPG QQGNHGSQGI
660 670 680 690 700
PGPQGPIGTP GEKGPPGNPG IPGVPGSEGP PGHPGHEGPT GEKGAQGPPG
710 720 730 740 750
SAGPRGYPGL RGVKGTSGNR GLQGEKGERG EDGFPGFKGD EGPKGDRGNP
760 770 780 790 800
GPPGPRGEDG PEGQKGPGGL PGDEGPPGAA GEKGKLGVPG LPGYPGRPGP
810 820 830 840 850
KGSIGFPGPL GPLGEKGKRG KAGQPGEEGE RGTPGTRGDR GQPGATGQPG
860 870 880 890 900
PKGDVGQNGS PGPPGEKGLP GLQGPPGFPG PKGPPGPQGK DGISGHPGQR
910 920 930 940 950
GELGFQGLTG PPGPAGVLGP QGKVGDVGPL GERGPPGPPG PPGEQGLPGI
960 970 980 990 1000
EGREGAKGEL GPLGSVGKEG PPGPRGFPGP QGAPGDPGPI GLKGDKGPPG
1010 1020 1030 1040 1050
PVGANGSPGE RGPVGPSGGI GLPGQSGGQG PIGPAGEKGS PGERGTPGPT
1060 1070 1080 1090 1100
GKDGIPGPPG LQGPSGAAGP SGEEGDKGEV GMPGHKGSKG DKGDAGPPGP
1110 1120 1130 1140 1150
TGIRGPAGHS GLPGADGAQG RRGPPGLFGQ KGDDGVRGFV GVIGPPGLQG
1160 1170 1180 1190 1200
LPGPPGEKGE VGDVGSMGPH GAPGPRGPPG PSGSEGPPGL PGGVGQPGAV
1210 1220 1230 1240 1250
GEKGEPGDAG DAGPPGIPGI PGPKGEIGEK GDSGPSGAAG PPGKKGPPGE
1260 1270 1280 1290 1300
DGSKGNMGPT GLPGDLGPPG DPGVPGIDGI PGEKGNAGDI GGPGPPGASG
1310 1320 1330 1340 1350
EPGARGLPGK RGSPGRMGPE GREGEKGAKG DAGPDGPPGR TGPIGARGPP
1360 1370 1380 1390 1400
GRIGPDGLPG IPGPVGEPGL LGPPGLIGPP GPLGPPGLPG LKGDAGPKGE
1410 1420 1430 1440 1450
KGHIGLIGLI GPPGEAGEKG DQGLPGVQGP PGLQGDPGLP GPVGSLGHPG
1460 1470 1480 1490 1500
PPGVVGPLGQ KGSKGSPGSL GPRGDPGPAG PPGPPGSPAE VHGLRRRRSV
1510 1520 1530 1540 1550
TDTLEGGLEE VMASLNSLSL ELQQLQRPLG TAESPGLMCR ELHRDHPHLP
1560 1570 1580 1590 1600
DGEYWIDPNQ GCARDAFKVF CNFTAGGETC LYPDKKFETV KLASWSREKP
1610 1620 1630 1640 1650
GGWYSTFRRG KKFSYVDADG SPVNVVQLTF LKLLSAAAHQ RFTYICQNSV
1660 1670 1680 1690 1700
AWLDEAAGDH RHSIRFQGTN WEELSFNQTT AATIKVSHDG CRVRKGQAKT
1710 1720 1730
LFEFSSSVGF LPLWDVAASD FGQTNQKFGF ELGSICFSS
Length:1,739
Mass (Da):171,969
Last modified:October 1, 2000 - v1
Checksum:iEFBDFEBA46E69984
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AC166365 Genomic DNA. No translation available.
AF176645 mRNA. Translation: AAF59901.1.
BC138417 mRNA. Translation: AAI38418.1.
BC138419 mRNA. Translation: AAI38420.1.
CH466522 Genomic DNA. Translation: EDL25130.1.
RefSeqiNP_058615.1. NM_016919.2.
UniGeneiMm.334994.

Genome annotation databases

EnsembliENSMUST00000004201; ENSMUSP00000004201; ENSMUSG00000004098.
GeneIDi53867.
KEGGimmu:53867.
UCSCiuc009ojf.1. mouse.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AC166365 Genomic DNA. No translation available.
AF176645 mRNA. Translation: AAF59901.1 .
BC138417 mRNA. Translation: AAI38418.1 .
BC138419 mRNA. Translation: AAI38420.1 .
CH466522 Genomic DNA. Translation: EDL25130.1 .
RefSeqi NP_058615.1. NM_016919.2.
UniGenei Mm.334994.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

Ensembli ENSMUST00000004201 ; ENSMUSP00000004201 ; ENSMUSG00000004098 .
GeneIDi 53867.
KEGGi mmu:53867.
UCSCi uc009ojf.1. mouse.

Organism-specific databases

CTDi 50509.
MGIi MGI:1858212. Col5a3.

Phylogenomic databases

GeneTreei ENSGT00760000118776.
HOGENOMi HOG000085654.
HOVERGENi HBG004933.
KOi K06236.
OMAi KGDVGQD.
OrthoDBi EOG7XPZ4W.
TreeFami TF323987.

Enzyme and pathway databases

Reactomei REACT_196606. ECM proteoglycans.
REACT_196607. Non-integrin membrane-ECM interactions.
REACT_196644. Syndecan interactions.
REACT_198984. Collagen biosynthesis and modifying enzymes.
REACT_199046. Assembly of collagen fibrils and other multimeric structures.
REACT_199055. Collagen degradation.
REACT_206066. Extracellular matrix organization.
REACT_216309. Integrin cell surface interactions.

Miscellaneous databases

ChiTaRSi COL5A3. mouse.
NextBioi 310709.
PROi Q9JLI2.
SOURCEi Search...

Gene expression databases

Genevestigatori Q9JLI2.

Family and domain databases

Gene3Di 2.60.120.200. 1 hit.
InterProi IPR008160. Collagen.
IPR013320. ConA-like_dom.
IPR000885. Fib_collagen_C.
IPR001791. Laminin_G.
[Graphical view ]
Pfami PF01410. COLFI. 1 hit.
PF01391. Collagen. 7 hits.
PF02210. Laminin_G_2. 1 hit.
[Graphical view ]
ProDomi PD002078. Fib_collagen_C. 1 hit.
[Graphical view ] [Entries sharing at least one domain ]
SMARTi SM00038. COLFI. 1 hit.
SM00282. LamG. 1 hit.
SM00210. TSPN. 1 hit.
[Graphical view ]
SUPFAMi SSF49899. SSF49899. 1 hit.
PROSITEi PS50025. LAM_G_DOMAIN. 1 hit.
PS51461. NC1_FIB. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "The pro-alpha3 (V) collagen chain. Complete primary structure, expression domains in adult and developing tissues, and comparison to the structures and expression domains of the other types V and XI procollagen chains."
    Imamura Y., Scott I.C., Greenspan D.S.
    J. Biol. Chem. 275:8749-8759(2000) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
    Tissue: BrainImported.
  2. "A comparison of whole-genome shotgun-derived mouse chromosome 16 and the human genome."
    Mural R.J., Adams M.D., Myers E.W., Smith H.O., Miklos G.L., Wides R., Halpern A., Li P.W., Sutton G.G., Nadeau J., Salzberg S.L., Holt R.A., Kodira C.D., Lu F., Chen L., Deng Z., Evangelista C.C., Gan W.
    , Heiman T.J., Li J., Li Z., Merkulov G.V., Milshina N.V., Naik A.K., Qi R., Shue B.C., Wang A., Wang J., Wang X., Yan X., Ye J., Yooseph S., Zhao Q., Zheng L., Zhu S.C., Biddick K., Bolanos R., Delcher A.L., Dew I.M., Fasulo D., Flanigan M.J., Huson D.H., Kravitz S.A., Miller J.R., Mobarry C.M., Reinert K., Remington K.A., Zhang Q., Zheng X.H., Nusskern D.R., Lai Z., Lei Y., Zhong W., Yao A., Guan P., Ji R.R., Gu Z., Wang Z.Y., Zhong F., Xiao C., Chiang C.C., Yandell M., Wortman J.R., Amanatides P.G., Hladun S.L., Pratts E.C., Johnson J.E., Dodson K.L., Woodford K.J., Evans C.A., Gropman B., Rusch D.B., Venter E., Wang M., Smith T.J., Houck J.T., Tompkins D.E., Haynes C., Jacob D., Chin S.H., Allen D.R., Dahlke C.E., Sanders R., Li K., Liu X., Levitsky A.A., Majoros W.H., Chen Q., Xia A.C., Lopez J.R., Donnelly M.T., Newman M.H., Glodek A., Kraft C.L., Nodell M., Ali F., An H.J., Baldwin-Pitts D., Beeson K.Y., Cai S., Carnes M., Carver A., Caulk P.M., Center A., Chen Y.H., Cheng M.L., Coyne M.D., Crowder M., Danaher S., Davenport L.B., Desilets R., Dietz S.M., Doup L., Dullaghan P., Ferriera S., Fosler C.R., Gire H.C., Gluecksmann A., Gocayne J.D., Gray J., Hart B., Haynes J., Hoover J., Howland T., Ibegwam C., Jalali M., Johns D., Kline L., Ma D.S., MacCawley S., Magoon A., Mann F., May D., McIntosh T.C., Mehta S., Moy L., Moy M.C., Murphy B.J., Murphy S.D., Nelson K.A., Nuri Z., Parker K.A., Prudhomme A.C., Puri V.N., Qureshi H., Raley J.C., Reardon M.S., Regier M.A., Rogers Y.H., Romblad D.L., Schutz J., Scott J.L., Scott R., Sitter C.D., Smallwood M., Sprague A.C., Stewart E., Strong R.V., Suh E., Sylvester K., Thomas R., Tint N.N., Tsonis C., Wang G., Wang G., Williams M.S., Williams S.M., Windsor S.M., Wolfe K., Wu M.M., Zaveri J., Chaturvedi K., Gabrielian A.E., Ke Z., Sun J., Subramanian G., Venter J.C., Pfannkoch C.M., Barnstead M., Stephenson L.D.
    Science 296:1661-1671(2002) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: MixedImported.
  3. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
    The MGC Project Team
    Gerhard D.S., Wagner L., Feingold E.A., Shenmen C.M., Grouse L.H., Schuler G., Klein S.L., Old S., Rasooly R., Good P., Guyer M., Peck A.M., Derge J.G., Lipman D., Collins F.S., Jang W., Sherry S., Feolo M.
    , Misquitta L., Lee E., Rotmistrovsky K., Greenhut S.F., Schaefer C.F., Buetow K., Bonner T.I., Haussler D., Kent J., Kiekhaus M., Furey T., Brent M., Prange C., Schreiber K., Shapiro N., Bhat N.K., Hopkins R.F., Hsie F., Driscoll T., Soares M.B., Casavant T.L., Scheetz T.E., Brown-stein M.J., Usdin T.B., Toshiyuki S., Carninci P., Piao Y., Dudekula D.B., Ko M.S., Kawakami K., Suzuki Y., Sugano S., Gruber C.E., Smith M.R., Simmons B., Moore T., Waterman R., Johnson S.L., Ruan Y., Wei C.L., Mathavan S., Gunaratne P.H., Wu J., Garcia A.M., Hulyk S.W., Fuh E., Yuan Y., Sneed A., Kowis C., Hodgson A., Muzny D.M., McPherson J., Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., Sanchez A., Whiting M., Madari A., Young A.C., Wetherby K.D., Granite S.J., Kwong P.N., Brinkley C.P., Pearson R.L., Bouffard G.G., Blakesly R.W., Green E.D., Dickson M.C., Rodriguez A.C., Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Griffith M., Griffith O.L., Krzywinski M.I., Liao N., Morin R., Morrin R., Palmquist D., Petrescu A.S., Skalska U., Smailus D.E., Stott J.M., Schnerch A., Schein J.E., Jones S.J., Holt R.A., Baross A., Marra M.A., Clifton S., Makowski K.A., Bosak S., Malek J.
    Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Tissue: BrainImported.
  4. Mural R.J., Adams M.D., Myers E.W., Smith H.O., Venter J.C.
    Submitted (JUL-2005) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: MixedImported.
  5. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: C57BL/6JImported.
  6. Ensembl
    Submitted (FEB-2012) to UniProtKB
    Cited for: IDENTIFICATION.
    Strain: C57BL/6JImported.

Entry informationi

Entry nameiQ9JLI2_MOUSE
AccessioniPrimary (citable) accession number: Q9JLI2
Entry historyi
Integrated into UniProtKB/TrEMBL: October 1, 2000
Last sequence update: October 1, 2000
Last modified: October 29, 2014
This is version 109 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3