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Protein
Submitted name:

Protein Zic1

Gene

Zic1

Organism
Rattus norvegicus (Rat)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
Protein Zic1Imported
Submitted name:
Zic proteinImported
Submitted name:
Zinc finger protein of the cerebellum 1, isoform CRA_aImported
Gene namesi
Name:Zic1Imported
Synonyms:zicImported
ORF Names:rCG_25795Imported
OrganismiRattus norvegicus (Rat)
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus
Proteomesi
  • UP000002494 Componenti: Chromosome 8

Organism-specific databases

RGDi620110. Zic1.

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Expressioni

Gene expression databases

BgeeiENSRNOG00000014644.

Interactioni

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000019860.

Structurei

3D structure databases

ProteinModelPortaliQ9JKY2.
SMRiQ9JKY2.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini274 – 301C2H2-typeInterPro annotationAdd BLAST28
Domaini302 – 331C2H2-typeInterPro annotationAdd BLAST30
Domaini332 – 361C2H2-typeInterPro annotationAdd BLAST30
Domaini362 – 389C2H2-typeInterPro annotationAdd BLAST28

Phylogenomic databases

eggNOGiKOG1721. Eukaryota.
COG5048. LUCA.
GeneTreeiENSGT00760000118771.
HOGENOMiHOG000232057.
HOVERGENiHBG007135.
KOiK09224.
OMAiNMNMAAH.
OrthoDBiEOG091G0M59.
PhylomeDBiQ9JKY2.
TreeFamiTF351425.

Family and domain databases

Gene3Di3.30.160.60. 5 hits.
InterProiIPR007087. Znf_C2H2.
IPR015880. Znf_C2H2-like.
IPR013087. Znf_C2H2/integrase_DNA-bd.
[Graphical view]
PfamiPF00096. zf-C2H2. 2 hits.
[Graphical view]
SMARTiSM00355. ZnF_C2H2. 5 hits.
[Graphical view]
PROSITEiPS00028. ZINC_FINGER_C2H2_1. 3 hits.
PS50157. ZINC_FINGER_C2H2_2. 4 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q9JKY2-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MLLDAGPQYP AIGVTTFGAS RHHSAGDVAE RDVGLGINPF ADGMGAFKLN
60 70 80 90 100
PSSHELASAG QTAFTSQAPG YAAAAALGHH HHPGHVGSYS SAAFNSTRDF
110 120 130 140 150
LFRNRGFGDA AAAASAQHSL FAASAGGFGG PHGHTDAAGH LLFSGLHEQA
160 170 180 190 200
AGHASPNVVN GQMRLGFSGD MYPRPEQYGQ VTSPRSEHYA APQLHGYGPM
210 220 230 240 250
NVNMAAHHGA GAFFRYMRQP IKQELICKWI EPEQLANPKK SCNKTFSTMH
260 270 280 290 300
ELVTHVTVEH VGGPEQSNHI CFWEECPREG KPFKAKYKLV NHIRVHTGEK
310 320 330 340 350
PFPCPFPGCG KVFARSENLK IHKRTHTGEK PFKCEFEGCD RRFANSSDRK
360 370 380 390 400
KHMHVHTSDK PYLCKMCDKS YTHPSSLRKH MKVHESSSQG SQPSPAASSG
410 420 430 440
YESSTPPTIV SPTTDNPTTS SMSPSSSAVH HTAGHSALSS NFNEWYV
Length:447
Mass (Da):48,331
Last modified:October 1, 2000 - v1
Checksum:iD41F412F44C2AD3D
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AABR07071064 Genomic DNA. No translation available.
AF221839 mRNA. Translation: AAF34656.1.
CH473954 Genomic DNA. Translation: EDL77550.1.
RefSeqiNP_073168.1. NM_022677.1.
XP_008764676.1. XM_008766454.2.
UniGeneiRn.161923.

Genome annotation databases

EnsembliENSRNOT00000019860; ENSRNOP00000019860; ENSRNOG00000014644.
GeneIDi64618.
KEGGirno:64618.
UCSCiRGD:620110. rat.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AABR07071064 Genomic DNA. No translation available.
AF221839 mRNA. Translation: AAF34656.1.
CH473954 Genomic DNA. Translation: EDL77550.1.
RefSeqiNP_073168.1. NM_022677.1.
XP_008764676.1. XM_008766454.2.
UniGeneiRn.161923.

3D structure databases

ProteinModelPortaliQ9JKY2.
SMRiQ9JKY2.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000019860.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSRNOT00000019860; ENSRNOP00000019860; ENSRNOG00000014644.
GeneIDi64618.
KEGGirno:64618.
UCSCiRGD:620110. rat.

Organism-specific databases

CTDi7545.
RGDi620110. Zic1.

Phylogenomic databases

eggNOGiKOG1721. Eukaryota.
COG5048. LUCA.
GeneTreeiENSGT00760000118771.
HOGENOMiHOG000232057.
HOVERGENiHBG007135.
KOiK09224.
OMAiNMNMAAH.
OrthoDBiEOG091G0M59.
PhylomeDBiQ9JKY2.
TreeFamiTF351425.

Gene expression databases

BgeeiENSRNOG00000014644.

Family and domain databases

Gene3Di3.30.160.60. 5 hits.
InterProiIPR007087. Znf_C2H2.
IPR015880. Znf_C2H2-like.
IPR013087. Znf_C2H2/integrase_DNA-bd.
[Graphical view]
PfamiPF00096. zf-C2H2. 2 hits.
[Graphical view]
SMARTiSM00355. ZnF_C2H2. 5 hits.
[Graphical view]
PROSITEiPS00028. ZINC_FINGER_C2H2_1. 3 hits.
PS50157. ZINC_FINGER_C2H2_2. 4 hits.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiQ9JKY2_RAT
AccessioniPrimary (citable) accession number: Q9JKY2
Entry historyi
Integrated into UniProtKB/TrEMBL: October 1, 2000
Last sequence update: October 1, 2000
Last modified: November 30, 2016
This is version 109 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.