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Q9JKE0

- Q9JKE0_RAT

UniProt

Q9JKE0 - Q9JKE0_RAT

Protein
Submitted name:

CD40 protein

Gene

Cd40

Organism
Rattus norvegicus (Rat)
Status
Unreviewed - Annotation score: 2 out of 5- Experimental evidence at transcript leveli
  1. Functioni

    GO - Molecular functioni

    1. antigen binding Source: RGD

    GO - Biological processi

    1. cellular response to lipopolysaccharide Source: RGD
    2. inflammatory response Source: RGD

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    CD40 proteinImported
    Gene namesi
    Name:Cd40Imported
    Synonyms:Tnfrsf5Imported
    OrganismiRattus norvegicus (Rat)Imported
    Taxonomic identifieri10116 [NCBI]
    Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus

    Organism-specific databases

    RGDi619830. Cd40.

    Subcellular locationi

    GO - Cellular componenti

    1. cell surface Source: RGD
    2. cytoplasm Source: RGD
    3. extracellular space Source: RGD

    Expressioni

    Gene expression databases

    GenevestigatoriQ9JKE0.

    Structurei

    3D structure databases

    ProteinModelPortaliQ9JKE0.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Phylogenomic databases

    HOVERGENiHBG005117.
    InParanoidiQ9JKE0.
    PhylomeDBiQ9JKE0.

    Family and domain databases

    InterProiIPR001368. TNFR/NGFR_Cys_rich_reg.
    IPR020435. TNFR_5.
    [Graphical view]
    PfamiPF00020. TNFR_c6. 1 hit.
    [Graphical view]
    PRINTSiPR01922. TNFACTORR5.
    SMARTiSM00208. TNFR. 3 hits.
    [Graphical view]
    PROSITEiPS00652. TNFR_NGFR_1. 1 hit.
    PS50050. TNFR_NGFR_2. 3 hits.
    [Graphical view]

    Sequencei

    Sequence statusi: Fragment.

    Q9JKE0-1 [UniParc]FASTAAdd to Basket

    « Hide

    MLPLPQLCAL WGCLLTAVHL GQCVTCSDKQ YLQGGECCDL CQPGNRLVSH    50
    CTALEKTQCQ PCDSGEFSAH WNREIRCHQH RHCELNQGLQ VKKEGTAVSD 100
    TVCTCKEGQH CASKECETCA QHRPCGPGFG VVQMATETTD TVCQPCPVGF 150
    FSNGSSLFEK CHPWTSCED 169
    Length:169
    Mass (Da):18,525
    Last modified:June 1, 2001 - v2
    Checksum:iF199D91EFA224A26
    GO

    Experimental Info

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Non-terminal residuei169 – 1691Imported

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AF241231 mRNA. Translation: AAF43717.2.
    UniGeneiRn.25180.

    Genome annotation databases

    UCSCiRGD:619830. rat.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AF241231 mRNA. Translation: AAF43717.2 .
    UniGenei Rn.25180.

    3D structure databases

    ProteinModelPortali Q9JKE0.
    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    UCSCi RGD:619830. rat.

    Organism-specific databases

    RGDi 619830. Cd40.

    Phylogenomic databases

    HOVERGENi HBG005117.
    InParanoidi Q9JKE0.
    PhylomeDBi Q9JKE0.

    Gene expression databases

    Genevestigatori Q9JKE0.

    Family and domain databases

    InterProi IPR001368. TNFR/NGFR_Cys_rich_reg.
    IPR020435. TNFR_5.
    [Graphical view ]
    Pfami PF00020. TNFR_c6. 1 hit.
    [Graphical view ]
    PRINTSi PR01922. TNFACTORR5.
    SMARTi SM00208. TNFR. 3 hits.
    [Graphical view ]
    PROSITEi PS00652. TNFR_NGFR_1. 1 hit.
    PS50050. TNFR_NGFR_2. 3 hits.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Cytokine-inducible CD40 gene expression in vascular smooth muscle cells is mediated by nuclear factor kappaB and signal transducer and activation of transcription-1."
      Krzesz R., Wagner A.H., Cattaruzza M., Hecker M.
      FEBS Lett. 453:191-196(1999) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE.
      Strain: WistarImported.
      Tissue: Smooth muscleImported.
    2. Krzesz R., Hecker M.
      Submitted (MAR-2000) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE.
      Strain: WistarImported.
      Tissue: Smooth muscleImported.
    3. Gao D., Hecker M.
      Submitted (MAR-2001) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE.
      Strain: WistarImported.
      Tissue: Smooth muscleImported.

    Entry informationi

    Entry nameiQ9JKE0_RAT
    AccessioniPrimary (citable) accession number: Q9JKE0
    Entry historyi
    Integrated into UniProtKB/TrEMBL: October 1, 2000
    Last sequence update: June 1, 2001
    Last modified: October 1, 2014
    This is version 59 of the entry and version 2 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)