Q9JK25 (Q9JK25_RAT) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
CLIP-170 EMBL CAB92974.1

Gene names

Name:	Clip1 RGD 67404
Synonyms:	cyln1 EMBL CAB92974.1, Rsn RGD 67404

Organism

Rattus norvegicus (Rat) EMBL CAB92974.1

Taxonomic identifier

10116 [NCBI]

Taxonomic lineage

cellular organisms › Eukaryota › Opisthokonta › Metazoa › Eumetazoa › Bilateria › Deuterostomia › Chordata › Craniata › Vertebrata › Gnathostomata › Teleostomi › Euteleostomi › Sarcopterygii › Tetrapoda › Amniota › Mammalia › Theria › Eutheria › Euarchontoglires › Glires › Rodentia › Sciurognathi › Muroidea › Muridae › Murinae › Rattus

Protein attributes

Sequence length	1320 AA.
Sequence status	Complete.
Protein existence	Evidence at protein level

Ontologies

Gene Ontology (GO)
Cellular_component	cytoplasmic microtubule Inferred from direct assay Ref.2. Source: UniProtKB
Molecular_function	microtubule plus-end binding Inferred from direct assay Ref.2. Source: UniProtKB nucleic acid binding Inferred from electronic annotation. Source: InterPro protein homodimerization activity Traceable author statement Ref.2. Source: UniProtKB zinc ion binding Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Binary interactions

With	Entry	#Exp.	IntAct	Notes
CLASP1	Q7Z460	2	EBI-908338,EBI-2562829	From a different organism.

Sequences

	Sequence		Length	Mass (Da)
	Q9JK25 [UniParc]. Last modified October 1, 2000. Version 1. Checksum: 87BE0F0463D20E9D	FASTA	1,320	148,265
	10 20 30 40 50 60 MSMLKPSGLK APTKILKPGS TALKTPAAAA APLEKTVPSE KASGPPSSET QEEFVDDFRV 70 80 90 100 110 120 GERVWVNGNK PGFIQFLGET QFAPGQWAGI VLDEPIGKND GSVAGVRYFQ CEPLKGIFTR 130 140 150 160 170 180 PSKLTRKVQA EDEANGLQTA HARAASPLST AAATMVSSSP ATPSNIPQKP SQPVAKETSA 190 200 210 220 230 240 TPQISNLTKT ASESISNLSE AGSVKKGERE LKIGDRVLVG GTKAGVVRFL GETDFAKGEW 250 260 270 280 290 300 CGVELDEPLG KNDGAVAGTR YFQCQPKYGL FAPVHKVTKI GFPSTTPAKA KAAAVRRVMA 310 320 330 340 350 360 TTPASLKRSP SASSLSSMSS VASSVSSKPS RTGLLTETSS RYARKISGTT ALQEALKEKQ 370 380 390 400 410 420 QHIEQLLAER DLERAEVAKA TSHVGEIEQE LALARDGHDQ HVLELEAKMD QLRTMVEAAD 430 440 450 460 470 480 REKVELLNQL EEEKRKVEDL QFRVEEESIT KGDLETQTKL EHARIKELEQ SLLFEKTKAD 490 500 510 520 530 540 KLQRELEDTR VATVSEKSRI MELEKDLALR VQEVAELRRR LESSKPPGDV DMSLSLLQEI 550 560 570 580 590 600 SALQEKLEVT HTDHQNEVTS LKDHFGTREE MFQKEIKALH AATEKLSKEN ESLRSKLDHA 610 620 630 640 650 660 NKENSDVIAL WKSKLETAIA SHQQAMEELK VSFSKGIGTD SAEFAELKTQ IERLRLDYQH 670 680 690 700 710 720 EIESLQSKQD SERSAHAKEM ESMKAKLMKI IKEKEDSLEA VKARLDTAED QHLVEMEEML 730 740 750 760 770 780 SKLQEAEIKK EKFASASEEA VSTQTSMQDT VNKLHQKEEQ FNMLSSELEK LRENLTDMEA 790 800 810 820 830 840 KFKEKDERED QLVKAKEKLE NDIAEIMKMS GDNSSQLTKM NDELRLKERS VEELQLKLTK 850 860 870 880 890 900 ANENASLLQK SIGEVTLKAE QSQQEAAKKH EEEKKELENK LLELEKKMET SHYQCQDLKA 910 920 930 940 950 960 KYEKASSETK IKHEEILQNF QKMLVDTEDK LKAAQEANRD LMQDMEELKS QADKAKAAQT 970 980 990 1000 1010 1020 AEDAMQIMEQ MTKEKTETLA SLEDTKQTNA KLQSELDTLK ENNLKTVEEL NKSKELLNEE 1030 1040 1050 1060 1070 1080 NQKMEEFKKE IETLKQAAAQ KSQQLSALQE ENVKLAEELG RTRDEVTSHQ KLEEERSVLN 1090 1100 1110 1120 1130 1140 NQLLEMKKSL PSNTLRESEY RKDADEEKAS LQKSISLTSA LLTEKDAELE KLRNEVTVLR 1150 1160 1170 1180 1190 1200 GENASAKSLH SVVQTLESDK VKLELKVKNL ELQLKENKRQ LSSSSGNTDV QTEEDERAQE 1210 1220 1230 1240 1250 1260 SQQMIDFLNS VIVDLQRKNQ DLKMKVEMMS EGALNGNGED PNSYDSDDQE KQSKKKPRLF 1270 1280 1290 1300 1310 1320 CDICDCFDLH DTEDCPTQAQ MSEDPPHSTH HGSRSEERPY CEICEMFGHW ATNCNDDETF

References

[1]	Galjart N. Submitted (MAR-1999) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE. Strain: Wistar EMBL CAB92974.1. Tissue: Hippocampus EMBL CAB92974.1.
[2]	"Clasps are CLIP-115 and -170 associating proteins involved in the regional regulation of microtubule dynamics in motile fibroblasts." Akhmanova A., Hoogenraad C.C., Drabek K., Stepanova T., Dortland B., Verkerk T., Vermeulen W., Burgering B.M., de Zeeuw C.I., Grosveld F., Galjart N. Cell 104:923-935(2001) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE. Strain: Wistar EMBL CAB92974.1. Tissue: Hippocampus EMBL CAB92974.1.
+	Additional computationally mapped references.

Cross-references

Sequence databases
EMBL GenBank DDBJ	AJ237670 mRNA. Translation: CAB92974.1.
IPI	IPI00201975.
RefSeq	NP_113933.2. NM_031745.2.
UniGene	Rn.22069.
3D structure databases
HSSP	HSSP built from PDB template 1LPL based on UniProtKB Q20728.
ProteinModelPortal	Q9JK25.
SMR	Q9JK25. Positions 4-130, 178-339.
ModBase	Search...
Protein-protein interaction databases
IntAct	Q9JK25. 3 interactions.
MINT	MINT-2738141.
STRING	Q9JK25.
PTM databases
PhosphoSite	Q9JK25.
Proteomic databases
PRIDE	Q9JK25.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	65201.
KEGG	rno:65201.
UCSC	RGD:67404. rat.
Organism-specific databases
CTD	6249.
RGD	67404. Clip1.
Phylogenomic databases
HOGENOM	HOG000092755.
HOVERGEN	HBG007123.
KO	K10421.
Gene expression databases
ArrayExpress	Q9JK25.
Genevestigator	Q9JK25.
Family and domain databases
Gene3D	2.30.30.190. 2 hits.
InterPro	IPR000938. CAP-Gly_domain. IPR001878. Znf_CCHC. [Graphical view]
Pfam	PF01302. CAP_GLY. 2 hits. [Graphical view]
SMART	SM01052. CAP_GLY. 2 hits. SM00343. ZnF_C2HC. 1 hit. [Graphical view]
SUPFAM	SSF74924. CAP-Gly_domain. 2 hits.
PROSITE	PS00845. CAP_GLY_1. 2 hits. PS50245. CAP_GLY_2. 2 hits. [Graphical view]
ProtoNet	Search...
Other
NextBio	614156.

Entry information

Entry name

Q9JK25_RAT

Accession

Primary (citable) accession number: Q9JK25

Entry history

Integrated into UniProtKB/TrEMBL:	October 1, 2000
Last sequence update:	October 1, 2000
Last modified:	April 3, 2013
This is version 74 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)