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Q9JJT1

- Q9JJT1_RAT

UniProt

Q9JJT1 - Q9JJT1_RAT

Protein
Submitted name:

Glucocorticoid-attenuated response gene 16 product

Gene

Ifit1

Organism
Rattus norvegicus (Rat)
Status
Unreviewed - Annotation score: 1 out of 5- Experimental evidence at transcript leveli
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    • History
      Entry version 73 (01 Oct 2014)
      Sequence version 1 (01 Oct 2000)
      Previous versions | rss
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    Names & Taxonomyi

    Protein namesi
    Submitted name:
    Glucocorticoid-attenuated response gene 16 productImported
    Gene namesi
    Name:Ifit1Imported
    Synonyms:garg16Imported
    OrganismiRattus norvegicus (Rat)Imported
    Taxonomic identifieri10116 [NCBI]
    Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus

    Organism-specific databases

    RGDi620599. Ifit1.

    Expressioni

    Gene expression databases

    GenevestigatoriQ9JJT1.

    Interactioni

    Protein-protein interaction databases

    STRINGi10116.ENSRNOP00000025770.

    Structurei

    3D structure databases

    ProteinModelPortaliQ9JJT1.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Keywords - Domaini

    RepeatUniRule annotation, TPR repeatUniRule annotationSAAS annotation

    Phylogenomic databases

    eggNOGiNOG311487.
    HOGENOMiHOG000001558.
    HOVERGENiHBG066330.
    InParanoidiQ9JJT1.
    KOiK14217.
    PhylomeDBiQ9JJT1.

    Family and domain databases

    Gene3Di1.25.40.10. 2 hits.
    InterProiIPR013026. TPR-contain_dom.
    IPR011990. TPR-like_helical.
    IPR001440. TPR_1.
    IPR013105. TPR_2.
    IPR019734. TPR_repeat.
    [Graphical view]
    PfamiPF00515. TPR_1. 1 hit.
    PF07719. TPR_2. 1 hit.
    [Graphical view]
    SMARTiSM00028. TPR. 5 hits.
    [Graphical view]
    PROSITEiPS50005. TPR. 5 hits.
    PS50293. TPR_REGION. 3 hits.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Q9JJT1-1 [UniParc]FASTAAdd to Basket

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    MGENAGGDQV MENLLQLRCH FTWGLLFEKN DIPDLEVRIS EQVQFLDIKN    50
    SLGMHNLQAY VRHLKGEQEE ALQSLKEAEA LIEGEQLGKR SLVTWGNCAW 100
    VHYHRGSLAE AQIYLDKVEN VCREFSSPFR YRMECAEIDC EEGWALLKCG 150
    GSNYMRAMAC FAKALQVDPE NPEYNAGYAV VAYRQDFDDN HVSLEPLRKA 200
    VRLNPEDPHL KVLLALKLQD LGEQDEAETH IEEALSSTSC QSYVFRYAAK 250
    YFRRKGDINE ALHLLHRALQ TSPSSGYLHY QKGLCYKQQM IQLKTSGNRQ 300
    ARRQENIQEL AHQAICEFQE TLNLRPTFEM AYVCMAEMQA EIGQYEEAEG 350
    NFQEALNLNN LVAHIEQDIH FRYGRSQQFH KKSEDKAITH YLKGLKLEEK 400
    SFAWRKLLTA LEKVAERRVR QNVRLVESTS LLGLVFKLKG QEMKALLYYE 450
    KALRLSGEMN PAF 463
    Length:463
    Mass (Da):53,413
    Last modified:October 1, 2000 - v1
    Checksum:iE058BCE2BC256728
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AJ276893 mRNA. Translation: CAB82773.1.
    RefSeqiNP_064481.1. NM_020096.1.
    UniGeneiRn.48677.

    Genome annotation databases

    GeneIDi56824.
    KEGGirno:56824.
    UCSCiRGD:620599. rat.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AJ276893 mRNA. Translation: CAB82773.1 .
    RefSeqi NP_064481.1. NM_020096.1.
    UniGenei Rn.48677.

    3D structure databases

    ProteinModelPortali Q9JJT1.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 10116.ENSRNOP00000025770.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    GeneIDi 56824.
    KEGGi rno:56824.
    UCSCi RGD:620599. rat.

    Organism-specific databases

    CTDi 3434.
    RGDi 620599. Ifit1.

    Phylogenomic databases

    eggNOGi NOG311487.
    HOGENOMi HOG000001558.
    HOVERGENi HBG066330.
    InParanoidi Q9JJT1.
    KOi K14217.
    PhylomeDBi Q9JJT1.

    Miscellaneous databases

    NextBioi 611257.

    Gene expression databases

    Genevestigatori Q9JJT1.

    Family and domain databases

    Gene3Di 1.25.40.10. 2 hits.
    InterProi IPR013026. TPR-contain_dom.
    IPR011990. TPR-like_helical.
    IPR001440. TPR_1.
    IPR013105. TPR_2.
    IPR019734. TPR_repeat.
    [Graphical view ]
    Pfami PF00515. TPR_1. 1 hit.
    PF07719. TPR_2. 1 hit.
    [Graphical view ]
    SMARTi SM00028. TPR. 5 hits.
    [Graphical view ]
    PROSITEi PS50005. TPR. 5 hits.
    PS50293. TPR_REGION. 3 hits.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Lipopolysaccharide-induced switch between retinoid receptor (RXR) alpha and glucocorticoid attenuated response gene (GARG)-16 messenger RNAs in cultured rat microglia."
      Kitamura Y., Spleiss O., Li H., Taniguchi T., Kimura H., Nomura Y., Gebicke-Haerter P.J.
      J. Neurosci. Res. 64:553-563(2001) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE.

    Entry informationi

    Entry nameiQ9JJT1_RAT
    AccessioniPrimary (citable) accession number: Q9JJT1
    Entry historyi
    Integrated into UniProtKB/TrEMBL: October 1, 2000
    Last sequence update: October 1, 2000
    Last modified: October 1, 2014
    This is version 73 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)