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Q9JJT1 (Q9JJT1_RAT) Unreviewed, UniProtKB/TrEMBL

Last modified July 9, 2014. Version 72. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
Gene names
Name:Ifit1 RGD 620599
Synonyms:garg16 EMBL CAB82773.1
OrganismRattus norvegicus (Rat) EMBL CAB82773.1
Taxonomic identifier10116 [NCBI]
Taxonomic lineageEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus

Protein attributes

Sequence length463 AA.
Sequence statusComplete.
Protein existenceEvidence at transcript level

Ontologies

Sequences

Sequence LengthMass (Da)Tools
Q9JJT1 [UniParc].

Last modified October 1, 2000. Version 1.
Checksum: E058BCE2BC256728

FASTA46353,413
        10         20         30         40         50         60 
MGENAGGDQV MENLLQLRCH FTWGLLFEKN DIPDLEVRIS EQVQFLDIKN SLGMHNLQAY 

        70         80         90        100        110        120 
VRHLKGEQEE ALQSLKEAEA LIEGEQLGKR SLVTWGNCAW VHYHRGSLAE AQIYLDKVEN 

       130        140        150        160        170        180 
VCREFSSPFR YRMECAEIDC EEGWALLKCG GSNYMRAMAC FAKALQVDPE NPEYNAGYAV 

       190        200        210        220        230        240 
VAYRQDFDDN HVSLEPLRKA VRLNPEDPHL KVLLALKLQD LGEQDEAETH IEEALSSTSC 

       250        260        270        280        290        300 
QSYVFRYAAK YFRRKGDINE ALHLLHRALQ TSPSSGYLHY QKGLCYKQQM IQLKTSGNRQ 

       310        320        330        340        350        360 
ARRQENIQEL AHQAICEFQE TLNLRPTFEM AYVCMAEMQA EIGQYEEAEG NFQEALNLNN 

       370        380        390        400        410        420 
LVAHIEQDIH FRYGRSQQFH KKSEDKAITH YLKGLKLEEK SFAWRKLLTA LEKVAERRVR 

       430        440        450        460 
QNVRLVESTS LLGLVFKLKG QEMKALLYYE KALRLSGEMN PAF 

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References

[1]"Lipopolysaccharide-induced switch between retinoid receptor (RXR) alpha and glucocorticoid attenuated response gene (GARG)-16 messenger RNAs in cultured rat microglia."
Kitamura Y., Spleiss O., Li H., Taniguchi T., Kimura H., Nomura Y., Gebicke-Haerter P.J.
J. Neurosci. Res. 64:553-563(2001) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AJ276893 mRNA. Translation: CAB82773.1.
RefSeqNP_064481.1. NM_020096.1.
UniGeneRn.48677.

3D structure databases

ProteinModelPortalQ9JJT1.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING10116.ENSRNOP00000025770.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID56824.
KEGGrno:56824.
UCSCRGD:620599. rat.

Organism-specific databases

CTD3434.
RGD620599. Ifit1.

Phylogenomic databases

eggNOGNOG311487.
HOGENOMHOG000001558.
HOVERGENHBG066330.
InParanoidQ9JJT1.
KOK14217.
PhylomeDBQ9JJT1.

Gene expression databases

GenevestigatorQ9JJT1.

Family and domain databases

Gene3D1.25.40.10. 2 hits.
InterProIPR013026. TPR-contain_dom.
IPR011990. TPR-like_helical.
IPR001440. TPR_1.
IPR013105. TPR_2.
IPR019734. TPR_repeat.
[Graphical view]
PfamPF00515. TPR_1. 1 hit.
PF07719. TPR_2. 1 hit.
[Graphical view]
SMARTSM00028. TPR. 5 hits.
[Graphical view]
PROSITEPS50005. TPR. 5 hits.
PS50293. TPR_REGION. 3 hits.
[Graphical view]
ProtoNetSearch...

Other

NextBio611257.

Entry information

Entry nameQ9JJT1_RAT
AccessionPrimary (citable) accession number: Q9JJT1
Entry history
Integrated into UniProtKB/TrEMBL: October 1, 2000
Last sequence update: October 1, 2000
Last modified: July 9, 2014
This is version 72 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)