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Protein
Submitted name:

Glucocorticoid-attenuated response gene 16 product

Gene

Ifit1

Organism
Rattus norvegicus (Rat)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at transcript leveli

Names & Taxonomyi

Protein namesi
Submitted name:
Glucocorticoid-attenuated response gene 16 productImported
Gene namesi
Name:Ifit1Imported
Synonyms:garg16Imported
OrganismiRattus norvegicus (Rat)Imported
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus

Organism-specific databases

RGDi620599. Ifit1.

Expressioni

Gene expression databases

GenevisibleiQ9JJT1. RN.

Interactioni

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000025770.

Structurei

3D structure databases

ProteinModelPortaliQ9JJT1.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Keywords - Domaini

RepeatUniRule annotation, TPR repeatUniRule annotation

Phylogenomic databases

eggNOGiNOG311487.
HOGENOMiHOG000001558.
HOVERGENiHBG066330.
KOiK14217.
PhylomeDBiQ9JJT1.

Family and domain databases

Gene3Di1.25.40.10. 2 hits.
InterProiIPR013026. TPR-contain_dom.
IPR011990. TPR-like_helical_dom.
IPR001440. TPR_1.
IPR013105. TPR_2.
IPR019734. TPR_repeat.
[Graphical view]
PfamiPF00515. TPR_1. 1 hit.
PF07719. TPR_2. 1 hit.
[Graphical view]
SMARTiSM00028. TPR. 5 hits.
[Graphical view]
PROSITEiPS50005. TPR. 5 hits.
PS50293. TPR_REGION. 3 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q9JJT1-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MGENAGGDQV MENLLQLRCH FTWGLLFEKN DIPDLEVRIS EQVQFLDIKN
60 70 80 90 100
SLGMHNLQAY VRHLKGEQEE ALQSLKEAEA LIEGEQLGKR SLVTWGNCAW
110 120 130 140 150
VHYHRGSLAE AQIYLDKVEN VCREFSSPFR YRMECAEIDC EEGWALLKCG
160 170 180 190 200
GSNYMRAMAC FAKALQVDPE NPEYNAGYAV VAYRQDFDDN HVSLEPLRKA
210 220 230 240 250
VRLNPEDPHL KVLLALKLQD LGEQDEAETH IEEALSSTSC QSYVFRYAAK
260 270 280 290 300
YFRRKGDINE ALHLLHRALQ TSPSSGYLHY QKGLCYKQQM IQLKTSGNRQ
310 320 330 340 350
ARRQENIQEL AHQAICEFQE TLNLRPTFEM AYVCMAEMQA EIGQYEEAEG
360 370 380 390 400
NFQEALNLNN LVAHIEQDIH FRYGRSQQFH KKSEDKAITH YLKGLKLEEK
410 420 430 440 450
SFAWRKLLTA LEKVAERRVR QNVRLVESTS LLGLVFKLKG QEMKALLYYE
460
KALRLSGEMN PAF
Length:463
Mass (Da):53,413
Last modified:October 1, 2000 - v1
Checksum:iE058BCE2BC256728
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AJ276893 mRNA. Translation: CAB82773.1.
RefSeqiNP_064481.1. NM_020096.1.
UniGeneiRn.48677.

Genome annotation databases

GeneIDi56824.
KEGGirno:56824.
UCSCiRGD:620599. rat.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AJ276893 mRNA. Translation: CAB82773.1.
RefSeqiNP_064481.1. NM_020096.1.
UniGeneiRn.48677.

3D structure databases

ProteinModelPortaliQ9JJT1.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000025770.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

GeneIDi56824.
KEGGirno:56824.
UCSCiRGD:620599. rat.

Organism-specific databases

CTDi3434.
RGDi620599. Ifit1.

Phylogenomic databases

eggNOGiNOG311487.
HOGENOMiHOG000001558.
HOVERGENiHBG066330.
KOiK14217.
PhylomeDBiQ9JJT1.

Miscellaneous databases

NextBioi611257.

Gene expression databases

GenevisibleiQ9JJT1. RN.

Family and domain databases

Gene3Di1.25.40.10. 2 hits.
InterProiIPR013026. TPR-contain_dom.
IPR011990. TPR-like_helical_dom.
IPR001440. TPR_1.
IPR013105. TPR_2.
IPR019734. TPR_repeat.
[Graphical view]
PfamiPF00515. TPR_1. 1 hit.
PF07719. TPR_2. 1 hit.
[Graphical view]
SMARTiSM00028. TPR. 5 hits.
[Graphical view]
PROSITEiPS50005. TPR. 5 hits.
PS50293. TPR_REGION. 3 hits.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Lipopolysaccharide-induced switch between retinoid receptor (RXR) alpha and glucocorticoid attenuated response gene (GARG)-16 messenger RNAs in cultured rat microglia."
    Kitamura Y., Spleiss O., Li H., Taniguchi T., Kimura H., Nomura Y., Gebicke-Haerter P.J.
    J. Neurosci. Res. 64:553-563(2001) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.

Entry informationi

Entry nameiQ9JJT1_RAT
AccessioniPrimary (citable) accession number: Q9JJT1
Entry historyi
Integrated into UniProtKB/TrEMBL: October 1, 2000
Last sequence update: October 1, 2000
Last modified: June 24, 2015
This is version 75 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.