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Q9JJT1

- Q9JJT1_RAT

UniProt

Q9JJT1 - Q9JJT1_RAT

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Protein
Submitted name:

Glucocorticoid-attenuated response gene 16 product

Gene
Ifit1, garg16
Organism
Rattus norvegicus (Rat)
Status
Unreviewed - Annotation score: 1 out of 5 - Experimental evidence at transcript leveli

Names & Taxonomyi

Protein namesi
Submitted name:
Glucocorticoid-attenuated response gene 16 productImported
Gene namesi
Name:Ifit1Imported
Synonyms:garg16Imported
OrganismiRattus norvegicus (Rat)Imported
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus

Organism-specific databases

RGDi620599. Ifit1.

Expressioni

Gene expression databases

GenevestigatoriQ9JJT1.

Interactioni

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000025770.

Structurei

3D structure databases

ProteinModelPortaliQ9JJT1.

Family & Domainsi

Keywords - Domaini

RepeatUniRule annotation, TPR repeatUniRule annotationSAAS annotations

Phylogenomic databases

eggNOGiNOG311487.
HOGENOMiHOG000001558.
HOVERGENiHBG066330.
InParanoidiQ9JJT1.
KOiK14217.
PhylomeDBiQ9JJT1.

Family and domain databases

Gene3Di1.25.40.10. 2 hits.
InterProiIPR013026. TPR-contain_dom.
IPR011990. TPR-like_helical.
IPR001440. TPR_1.
IPR013105. TPR_2.
IPR019734. TPR_repeat.
[Graphical view]
PfamiPF00515. TPR_1. 1 hit.
PF07719. TPR_2. 1 hit.
[Graphical view]
SMARTiSM00028. TPR. 5 hits.
[Graphical view]
PROSITEiPS50005. TPR. 5 hits.
PS50293. TPR_REGION. 3 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q9JJT1-1 [UniParc]FASTAAdd to Basket

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MGENAGGDQV MENLLQLRCH FTWGLLFEKN DIPDLEVRIS EQVQFLDIKN    50
SLGMHNLQAY VRHLKGEQEE ALQSLKEAEA LIEGEQLGKR SLVTWGNCAW 100
VHYHRGSLAE AQIYLDKVEN VCREFSSPFR YRMECAEIDC EEGWALLKCG 150
GSNYMRAMAC FAKALQVDPE NPEYNAGYAV VAYRQDFDDN HVSLEPLRKA 200
VRLNPEDPHL KVLLALKLQD LGEQDEAETH IEEALSSTSC QSYVFRYAAK 250
YFRRKGDINE ALHLLHRALQ TSPSSGYLHY QKGLCYKQQM IQLKTSGNRQ 300
ARRQENIQEL AHQAICEFQE TLNLRPTFEM AYVCMAEMQA EIGQYEEAEG 350
NFQEALNLNN LVAHIEQDIH FRYGRSQQFH KKSEDKAITH YLKGLKLEEK 400
SFAWRKLLTA LEKVAERRVR QNVRLVESTS LLGLVFKLKG QEMKALLYYE 450
KALRLSGEMN PAF 463
Length:463
Mass (Da):53,413
Last modified:October 1, 2000 - v1
Checksum:iE058BCE2BC256728
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AJ276893 mRNA. Translation: CAB82773.1.
RefSeqiNP_064481.1. NM_020096.1.
UniGeneiRn.48677.

Genome annotation databases

GeneIDi56824.
KEGGirno:56824.
UCSCiRGD:620599. rat.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AJ276893 mRNA. Translation: CAB82773.1 .
RefSeqi NP_064481.1. NM_020096.1.
UniGenei Rn.48677.

3D structure databases

ProteinModelPortali Q9JJT1.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 10116.ENSRNOP00000025770.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

GeneIDi 56824.
KEGGi rno:56824.
UCSCi RGD:620599. rat.

Organism-specific databases

CTDi 3434.
RGDi 620599. Ifit1.

Phylogenomic databases

eggNOGi NOG311487.
HOGENOMi HOG000001558.
HOVERGENi HBG066330.
InParanoidi Q9JJT1.
KOi K14217.
PhylomeDBi Q9JJT1.

Miscellaneous databases

NextBioi 611257.

Gene expression databases

Genevestigatori Q9JJT1.

Family and domain databases

Gene3Di 1.25.40.10. 2 hits.
InterProi IPR013026. TPR-contain_dom.
IPR011990. TPR-like_helical.
IPR001440. TPR_1.
IPR013105. TPR_2.
IPR019734. TPR_repeat.
[Graphical view ]
Pfami PF00515. TPR_1. 1 hit.
PF07719. TPR_2. 1 hit.
[Graphical view ]
SMARTi SM00028. TPR. 5 hits.
[Graphical view ]
PROSITEi PS50005. TPR. 5 hits.
PS50293. TPR_REGION. 3 hits.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Lipopolysaccharide-induced switch between retinoid receptor (RXR) alpha and glucocorticoid attenuated response gene (GARG)-16 messenger RNAs in cultured rat microglia."
    Kitamura Y., Spleiss O., Li H., Taniguchi T., Kimura H., Nomura Y., Gebicke-Haerter P.J.
    J. Neurosci. Res. 64:553-563(2001) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.

Entry informationi

Entry nameiQ9JJT1_RAT
AccessioniPrimary (citable) accession number: Q9JJT1
Entry historyi
Integrated into UniProtKB/TrEMBL: October 1, 2000
Last sequence update: October 1, 2000
Last modified: July 9, 2014
This is version 72 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

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