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Protein

Nuclear receptor-interacting protein 3

Gene

Nrip3

Organism
Mus musculus (Mouse)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

Complete GO annotation...

Protein family/group databases

MEROPSiA28.002.

Names & Taxonomyi

Protein namesi
Recommended name:
Nuclear receptor-interacting protein 3
Gene namesi
Name:Nrip3
Synonyms:D7H11orf14
OrganismiMus musculus (Mouse)
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus
ProteomesiUP000000589 Componenti: Chromosome 7

Organism-specific databases

MGIiMGI:1925843. Nrip3.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 240240Nuclear receptor-interacting protein 3PRO_0000057954Add
BLAST

Proteomic databases

MaxQBiQ9JJR9.
PaxDbiQ9JJR9.
PRIDEiQ9JJR9.

PTM databases

PhosphoSiteiQ9JJR9.

Expressioni

Gene expression databases

BgeeiQ9JJR9.
CleanExiMM_NRIP3.
ExpressionAtlasiQ9JJR9. baseline and differential.
GenevisibleiQ9JJR9. MM.

Interactioni

Protein-protein interaction databases

BioGridi219504. 1 interaction.
IntActiQ9JJR9. 1 interaction.
STRINGi10090.ENSMUSP00000033331.

Structurei

3D structure databases

ProteinModelPortaliQ9JJR9.
SMRiQ9JJR9. Positions 106-219.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiNOG247233.
GeneTreeiENSGT00510000046989.
HOGENOMiHOG000236257.
HOVERGENiHBG052668.
InParanoidiQ9JJR9.
PhylomeDBiQ9JJR9.
TreeFamiTF333421.

Family and domain databases

InterProiIPR019103. Peptidase_aspartic_DDI1-type.
IPR021109. Peptidase_aspartic_dom.
[Graphical view]
PfamiPF09668. Asp_protease. 1 hit.
[Graphical view]
SUPFAMiSSF50630. SSF50630. 1 hit.

Sequencei

Sequence statusi: Complete.

Q9JJR9-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MFYSGLLTEG GRKETDMREA ASLRQQRRMK QAVQFIHKDS ADLLPLDGLK
60 70 80 90 100
KLGSSKDTQP HNILQRRLME TNLSKLRSTR VPWASKTNKF NQAKSEGLKK
110 120 130 140 150
CEDEDMILVS CQCAGKDVKA LVDTGCQYNL ISSACVDRLG LKDHVKSHKH
160 170 180 190 200
EGEKLSLPRH LKVVGQIEHL MITVGSLRLD CQAAVVDDNE KSLSLGLQTL
210 220 230 240
RSLKCIINLD KHRLIVGKTD KEEIPFVETV SVNDDNTSEA
Length:240
Mass (Da):26,879
Last modified:October 1, 2000 - v1
Checksum:i05D527AACF6C562A
GO

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti68 – 681L → F in BAC38775 (PubMed:16141072).Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AJ400878 Genomic DNA. Translation: CAB92294.1.
AK083130 mRNA. Translation: BAC38775.1.
CCDSiCCDS21739.1.
RefSeqiNP_065635.1. NM_020610.1.
UniGeneiMm.275374.

Genome annotation databases

EnsembliENSMUST00000033331; ENSMUSP00000033331; ENSMUSG00000034825.
GeneIDi78593.
KEGGimmu:78593.
UCSCiuc009jef.1. mouse.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AJ400878 Genomic DNA. Translation: CAB92294.1.
AK083130 mRNA. Translation: BAC38775.1.
CCDSiCCDS21739.1.
RefSeqiNP_065635.1. NM_020610.1.
UniGeneiMm.275374.

3D structure databases

ProteinModelPortaliQ9JJR9.
SMRiQ9JJR9. Positions 106-219.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi219504. 1 interaction.
IntActiQ9JJR9. 1 interaction.
STRINGi10090.ENSMUSP00000033331.

Protein family/group databases

MEROPSiA28.002.

PTM databases

PhosphoSiteiQ9JJR9.

Proteomic databases

MaxQBiQ9JJR9.
PaxDbiQ9JJR9.
PRIDEiQ9JJR9.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSMUST00000033331; ENSMUSP00000033331; ENSMUSG00000034825.
GeneIDi78593.
KEGGimmu:78593.
UCSCiuc009jef.1. mouse.

Organism-specific databases

CTDi56675.
MGIiMGI:1925843. Nrip3.

Phylogenomic databases

eggNOGiNOG247233.
GeneTreeiENSGT00510000046989.
HOGENOMiHOG000236257.
HOVERGENiHBG052668.
InParanoidiQ9JJR9.
PhylomeDBiQ9JJR9.
TreeFamiTF333421.

Miscellaneous databases

NextBioi349155.
PROiQ9JJR9.
SOURCEiSearch...

Gene expression databases

BgeeiQ9JJR9.
CleanExiMM_NRIP3.
ExpressionAtlasiQ9JJR9. baseline and differential.
GenevisibleiQ9JJR9. MM.

Family and domain databases

InterProiIPR019103. Peptidase_aspartic_DDI1-type.
IPR021109. Peptidase_aspartic_dom.
[Graphical view]
PfamiPF09668. Asp_protease. 1 hit.
[Graphical view]
SUPFAMiSSF50630. SSF50630. 1 hit.
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Comparative genomic sequencing reveals a strikingly similar architecture of a conserved syntenic region on human chromosome 11p15.3 (including gene ST5) and mouse chromosome 7."
    Amid C., Bahr A., Mujica A., Sampson N., Bikar S.E., Winterpacht A., Zabel B., Hankeln T., Schmidt E.R.
    Cytogenet. Cell Genet. 93:284-290(2001) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
  2. "The transcriptional landscape of the mammalian genome."
    Carninci P., Kasukawa T., Katayama S., Gough J., Frith M.C., Maeda N., Oyama R., Ravasi T., Lenhard B., Wells C., Kodzius R., Shimokawa K., Bajic V.B., Brenner S.E., Batalov S., Forrest A.R., Zavolan M., Davis M.J.
    , Wilming L.G., Aidinis V., Allen J.E., Ambesi-Impiombato A., Apweiler R., Aturaliya R.N., Bailey T.L., Bansal M., Baxter L., Beisel K.W., Bersano T., Bono H., Chalk A.M., Chiu K.P., Choudhary V., Christoffels A., Clutterbuck D.R., Crowe M.L., Dalla E., Dalrymple B.P., de Bono B., Della Gatta G., di Bernardo D., Down T., Engstrom P., Fagiolini M., Faulkner G., Fletcher C.F., Fukushima T., Furuno M., Futaki S., Gariboldi M., Georgii-Hemming P., Gingeras T.R., Gojobori T., Green R.E., Gustincich S., Harbers M., Hayashi Y., Hensch T.K., Hirokawa N., Hill D., Huminiecki L., Iacono M., Ikeo K., Iwama A., Ishikawa T., Jakt M., Kanapin A., Katoh M., Kawasawa Y., Kelso J., Kitamura H., Kitano H., Kollias G., Krishnan S.P., Kruger A., Kummerfeld S.K., Kurochkin I.V., Lareau L.F., Lazarevic D., Lipovich L., Liu J., Liuni S., McWilliam S., Madan Babu M., Madera M., Marchionni L., Matsuda H., Matsuzawa S., Miki H., Mignone F., Miyake S., Morris K., Mottagui-Tabar S., Mulder N., Nakano N., Nakauchi H., Ng P., Nilsson R., Nishiguchi S., Nishikawa S., Nori F., Ohara O., Okazaki Y., Orlando V., Pang K.C., Pavan W.J., Pavesi G., Pesole G., Petrovsky N., Piazza S., Reed J., Reid J.F., Ring B.Z., Ringwald M., Rost B., Ruan Y., Salzberg S.L., Sandelin A., Schneider C., Schoenbach C., Sekiguchi K., Semple C.A., Seno S., Sessa L., Sheng Y., Shibata Y., Shimada H., Shimada K., Silva D., Sinclair B., Sperling S., Stupka E., Sugiura K., Sultana R., Takenaka Y., Taki K., Tammoja K., Tan S.L., Tang S., Taylor M.S., Tegner J., Teichmann S.A., Ueda H.R., van Nimwegen E., Verardo R., Wei C.L., Yagi K., Yamanishi H., Zabarovsky E., Zhu S., Zimmer A., Hide W., Bult C., Grimmond S.M., Teasdale R.D., Liu E.T., Brusic V., Quackenbush J., Wahlestedt C., Mattick J.S., Hume D.A., Kai C., Sasaki D., Tomaru Y., Fukuda S., Kanamori-Katayama M., Suzuki M., Aoki J., Arakawa T., Iida J., Imamura K., Itoh M., Kato T., Kawaji H., Kawagashira N., Kawashima T., Kojima M., Kondo S., Konno H., Nakano K., Ninomiya N., Nishio T., Okada M., Plessy C., Shibata K., Shiraki T., Suzuki S., Tagami M., Waki K., Watahiki A., Okamura-Oho Y., Suzuki H., Kawai J., Hayashizaki Y.
    Science 309:1559-1563(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Strain: C57BL/6J.
    Tissue: Hippocampus.

Entry informationi

Entry nameiNRIP3_MOUSE
AccessioniPrimary (citable) accession number: Q9JJR9
Secondary accession number(s): Q8BUN8
Entry historyi
Integrated into UniProtKB/Swiss-Prot: August 29, 2003
Last sequence update: October 1, 2000
Last modified: June 24, 2015
This is version 90 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. MGD cross-references
    Mouse Genome Database (MGD) cross-references in UniProtKB/Swiss-Prot

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.