ID POLH_MOUSE Reviewed; 694 AA. AC Q9JJN0; Q9JJJ2; DT 15-FEB-2005, integrated into UniProtKB/Swiss-Prot. DT 01-OCT-2000, sequence version 1. DT 24-JAN-2024, entry version 151. DE RecName: Full=DNA polymerase eta; DE EC=2.7.7.7 {ECO:0000250|UniProtKB:Q9Y253}; DE AltName: Full=RAD30 homolog A; DE AltName: Full=Xeroderma pigmentosum variant type protein homolog; GN Name=Polh; Synonyms=Rad30a, Xpv; OS Mus musculus (Mouse). OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; OC Murinae; Mus; Mus. OX NCBI_TaxID=10090; RN [1] RP NUCLEOTIDE SEQUENCE [MRNA], FUNCTION, INDUCTION, AND TISSUE SPECIFICITY. RC STRAIN=129/Sv; TISSUE=Embryo; RX PubMed=10871396; DOI=10.1093/nar/28.13.2473; RA Yamada A., Masutani C., Iwai S., Hanaoka F.; RT "Complementation of defective translesion synthesis and UV light- RT sensitivity in xeroderma pigmentosum variant cells by human and mouse DNA RT polymerase eta."; RL Nucleic Acids Res. 28:2473-2480(2000). RN [2] RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. RC STRAIN=C57BL/6J; TISSUE=Cerebellum; RX PubMed=16141072; DOI=10.1126/science.1112014; RA Carninci P., Kasukawa T., Katayama S., Gough J., Frith M.C., Maeda N., RA Oyama R., Ravasi T., Lenhard B., Wells C., Kodzius R., Shimokawa K., RA Bajic V.B., Brenner S.E., Batalov S., Forrest A.R., Zavolan M., Davis M.J., RA Wilming L.G., Aidinis V., Allen J.E., Ambesi-Impiombato A., Apweiler R., RA Aturaliya R.N., Bailey T.L., Bansal M., Baxter L., Beisel K.W., Bersano T., RA Bono H., Chalk A.M., Chiu K.P., Choudhary V., Christoffels A., RA Clutterbuck D.R., Crowe M.L., Dalla E., Dalrymple B.P., de Bono B., RA Della Gatta G., di Bernardo D., Down T., Engstrom P., Fagiolini M., RA Faulkner G., Fletcher C.F., Fukushima T., Furuno M., Futaki S., RA Gariboldi M., Georgii-Hemming P., Gingeras T.R., Gojobori T., Green R.E., RA Gustincich S., Harbers M., Hayashi Y., Hensch T.K., Hirokawa N., Hill D., RA Huminiecki L., Iacono M., Ikeo K., Iwama A., Ishikawa T., Jakt M., RA Kanapin A., Katoh M., Kawasawa Y., Kelso J., Kitamura H., Kitano H., RA Kollias G., Krishnan S.P., Kruger A., Kummerfeld S.K., Kurochkin I.V., RA Lareau L.F., Lazarevic D., Lipovich L., Liu J., Liuni S., McWilliam S., RA Madan Babu M., Madera M., Marchionni L., Matsuda H., Matsuzawa S., Miki H., RA Mignone F., Miyake S., Morris K., Mottagui-Tabar S., Mulder N., Nakano N., RA Nakauchi H., Ng P., Nilsson R., Nishiguchi S., Nishikawa S., Nori F., RA Ohara O., Okazaki Y., Orlando V., Pang K.C., Pavan W.J., Pavesi G., RA Pesole G., Petrovsky N., Piazza S., Reed J., Reid J.F., Ring B.Z., RA Ringwald M., Rost B., Ruan Y., Salzberg S.L., Sandelin A., Schneider C., RA Schoenbach C., Sekiguchi K., Semple C.A., Seno S., Sessa L., Sheng Y., RA Shibata Y., Shimada H., Shimada K., Silva D., Sinclair B., Sperling S., RA Stupka E., Sugiura K., Sultana R., Takenaka Y., Taki K., Tammoja K., RA Tan S.L., Tang S., Taylor M.S., Tegner J., Teichmann S.A., Ueda H.R., RA van Nimwegen E., Verardo R., Wei C.L., Yagi K., Yamanishi H., RA Zabarovsky E., Zhu S., Zimmer A., Hide W., Bult C., Grimmond S.M., RA Teasdale R.D., Liu E.T., Brusic V., Quackenbush J., Wahlestedt C., RA Mattick J.S., Hume D.A., Kai C., Sasaki D., Tomaru Y., Fukuda S., RA Kanamori-Katayama M., Suzuki M., Aoki J., Arakawa T., Iida J., Imamura K., RA Itoh M., Kato T., Kawaji H., Kawagashira N., Kawashima T., Kojima M., RA Kondo S., Konno H., Nakano K., Ninomiya N., Nishio T., Okada M., Plessy C., RA Shibata K., Shiraki T., Suzuki S., Tagami M., Waki K., Watahiki A., RA Okamura-Oho Y., Suzuki H., Kawai J., Hayashizaki Y.; RT "The transcriptional landscape of the mammalian genome."; RL Science 309:1559-1563(2005). RN [3] RP INTERACTION WITH REV1. RX PubMed=14657033; DOI=10.1093/emboj/cdg626; RA Guo C., Fischhaber P.L., Luk-Paszyc M.J., Masuda Y., Zhou J., Kamiya K., RA Kisker C., Friedberg E.C.; RT "Mouse Rev1 protein interacts with multiple DNA polymerases involved in RT translesion DNA synthesis."; RL EMBO J. 22:6621-6630(2003). CC -!- FUNCTION: DNA polymerase specifically involved in the DNA repair by CC translesion synthesis (TLS) (PubMed:10871396). Due to low processivity CC on both damaged and normal DNA, cooperates with the heterotetrameric CC (REV3L, REV7, POLD2 and POLD3) POLZ complex for complete bypass of DNA CC lesions. Inserts one or 2 nucleotide(s) opposite the lesion, the primer CC is further extended by the tetrameric POLZ complex. In the case of 1,2- CC intrastrand d(GpG)-cisplatin cross-link, inserts dCTP opposite the 3' CC guanine (By similarity). Particularly important for the repair of UV- CC induced pyrimidine dimers (PubMed:10871396). Although inserts the CC correct base, may cause base transitions and transversions depending CC upon the context. May play a role in hypermutation at immunoglobulin CC genes. Forms a Schiff base with 5'-deoxyribose phosphate at abasic CC sites, but does not have any lyase activity, preventing the release of CC the 5'-deoxyribose phosphate (5'-dRP) residue. This covalent trapping CC of the enzyme by the 5'-dRP residue inhibits its DNA synthetic activity CC during base excision repair, thereby avoiding high incidence of CC mutagenesis. Targets POLI to replication foci (By similarity). CC {ECO:0000250|UniProtKB:Q9Y253, ECO:0000269|PubMed:10871396}. CC -!- CATALYTIC ACTIVITY: CC Reaction=a 2'-deoxyribonucleoside 5'-triphosphate + DNA(n) = CC diphosphate + DNA(n+1); Xref=Rhea:RHEA:22508, Rhea:RHEA-COMP:17339, CC Rhea:RHEA-COMP:17340, ChEBI:CHEBI:33019, ChEBI:CHEBI:61560, CC ChEBI:CHEBI:173112; EC=2.7.7.7; CC Evidence={ECO:0000250|UniProtKB:Q9Y253}; CC -!- COFACTOR: CC Name=Mg(2+); Xref=ChEBI:CHEBI:18420; CC Evidence={ECO:0000250|UniProtKB:Q9Y253}; CC Name=Mn(2+); Xref=ChEBI:CHEBI:29035; CC Evidence={ECO:0000250|UniProtKB:Q9Y253}; CC Note=Binds 2 Mg(2+). Prefers Mg(2+), but can also use Mn(2+). In vitro, CC can also utilize other divalent cations such as Ca(2+). CC {ECO:0000250|UniProtKB:Q9Y253}; CC -!- ACTIVITY REGULATION: The enzyme in complex with the DNA substrate binds CC a third divalent metal cation. The binding of this third divalent CC cation, which is coordinated by water molecules and two oxygen atoms CC from DNA and dNTP, is essential for catalyzing the DNA synthesis. CC {ECO:0000250|UniProtKB:Q9Y253}. CC -!- SUBUNIT: Interacts with REV1 (PubMed:14657033). Interacts with CC monoubiquitinated PCNA, but not unmodified PCNA (By similarity). CC Interacts with POLI; this interaction targets POLI to the replication CC machinery (By similarity). Interacts with PALB2 and BRCA2; the CC interactions are direct and are required to sustain the recruitment of CC POLH at blocked replication forks and to stimulate POLH-dependent DNA CC synthesis on D loop substrates (By similarity). Interacts (via C- CC terminus) with TRAIP. Interacts with ubiquitin (By similarity). CC Interacts with POLDIP2. {ECO:0000250|UniProtKB:Q9Y253, CC ECO:0000269|PubMed:14657033}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000250|UniProtKB:Q9Y253}. CC Note=Binding to ubiquitinated PCNA mediates colocalization to CC replication foci during DNA replication and persists at sites of CC stalled replication forks following UV irradiation. After UV CC irradiation, recruited to DNA damage sites within 1 hour, to a maximum CC of about 80%; this recruitment may not be not restricted to cells CC active in DNA replication. Colocalizes with TRAIP to nuclear foci. CC {ECO:0000250|UniProtKB:Q9Y253}. CC -!- TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:10871396}. CC -!- INDUCTION: Up-regulated in proliferating cultured fibroblasts. CC {ECO:0000269|PubMed:10871396}. CC -!- DOMAIN: The catalytic core consists of fingers, palm and thumb CC subdomains, but the fingers and thumb subdomains are much smaller than CC in high-fidelity polymerases; residues from five sequence motifs of the CC Y-family cluster around an active site cleft that can accommodate DNA CC and nucleotide substrates with relaxed geometric constraints, with CC consequently higher rates of misincorporation and low processivity. CC {ECO:0000250|UniProtKB:Q9Y253}. CC -!- DOMAIN: The UBZ3-type zinc finger domain and the PIP-box mediate the CC interaction with ubiquitinated PCNA and are both necessary for the CC enzymatic activity in translesion synthesis. CC {ECO:0000250|UniProtKB:Q9Y253}. CC -!- PTM: Monoubiquitinated by RCHY1/PIRH2. Ubiquitination depends on CC integrity of the UBZ3-type zinc finger domain and is enhanced by TRAIP. CC Ubiquitination inhibits the ability of PolH to interact with PCNA and CC to bypass UV-induced lesions. {ECO:0000250|UniProtKB:Q9Y253}. CC -!- SIMILARITY: Belongs to the DNA polymerase type-Y family. {ECO:0000305}. CC --------------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution (CC BY 4.0) License CC --------------------------------------------------------------------------- DR EMBL; AB027128; BAA97570.1; -; mRNA. DR EMBL; AB037184; BAA97585.1; -; mRNA. DR EMBL; AK036296; BAC29375.1; -; mRNA. DR CCDS; CCDS28822.1; -. DR RefSeq; NP_109640.1; NM_030715.3. DR AlphaFoldDB; Q9JJN0; -. DR SMR; Q9JJN0; -. DR BioGRID; 219842; 8. DR IntAct; Q9JJN0; 1. DR STRING; 10090.ENSMUSP00000024749; -. DR iPTMnet; Q9JJN0; -. DR PhosphoSitePlus; Q9JJN0; -. DR EPD; Q9JJN0; -. DR MaxQB; Q9JJN0; -. DR PaxDb; 10090-ENSMUSP00000024749; -. DR ProteomicsDB; 289780; -. DR Pumba; Q9JJN0; -. DR Antibodypedia; 1879; 222 antibodies from 30 providers. DR DNASU; 80905; -. DR Ensembl; ENSMUST00000024749.9; ENSMUSP00000024749.8; ENSMUSG00000023953.10. DR GeneID; 80905; -. DR KEGG; mmu:80905; -. DR UCSC; uc008crx.1; mouse. DR AGR; MGI:1891457; -. DR CTD; 5429; -. DR MGI; MGI:1891457; Polh. DR VEuPathDB; HostDB:ENSMUSG00000023953; -. DR eggNOG; KOG2095; Eukaryota. DR GeneTree; ENSGT00940000157048; -. DR HOGENOM; CLU_012348_7_2_1; -. DR InParanoid; Q9JJN0; -. DR OMA; QNHRVAK; -. DR OrthoDB; 118267at2759; -. DR PhylomeDB; Q9JJN0; -. DR TreeFam; TF103010; -. DR Reactome; R-MMU-110320; Translesion Synthesis by POLH. DR Reactome; R-MMU-5656169; Termination of translesion DNA synthesis. DR Reactome; R-MMU-5685942; HDR through Homologous Recombination (HRR). DR BioGRID-ORCS; 80905; 5 hits in 112 CRISPR screens. DR ChiTaRS; Polh; mouse. DR PRO; PR:Q9JJN0; -. DR Proteomes; UP000000589; Chromosome 17. DR RNAct; Q9JJN0; Protein. DR Bgee; ENSMUSG00000023953; Expressed in endothelial cell of lymphatic vessel and 221 other cell types or tissues. DR ExpressionAtlas; Q9JJN0; baseline and differential. DR GO; GO:0005829; C:cytosol; ISO:MGI. DR GO; GO:0005654; C:nucleoplasm; ISO:MGI. DR GO; GO:0005634; C:nucleus; IBA:GO_Central. DR GO; GO:0005657; C:replication fork; IBA:GO_Central. DR GO; GO:0035861; C:site of double-strand break; IBA:GO_Central. DR GO; GO:0003684; F:damaged DNA binding; IEA:InterPro. DR GO; GO:0003887; F:DNA-directed DNA polymerase activity; IDA:MGI. DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW. DR GO; GO:0071494; P:cellular response to UV-C; IMP:MGI. DR GO; GO:0006260; P:DNA replication; IEA:UniProtKB-KW. DR GO; GO:0000731; P:DNA synthesis involved in DNA repair; ISO:MGI. DR GO; GO:0042276; P:error-prone translesion synthesis; IBA:GO_Central. DR GO; GO:0006301; P:postreplication repair; IDA:MGI. DR GO; GO:0006290; P:pyrimidine dimer repair; IDA:MGI. DR GO; GO:0009314; P:response to radiation; IBA:GO_Central. DR GO; GO:0010225; P:response to UV-C; ISO:MGI. DR CDD; cd01702; PolY_Pol_eta; 1. DR Gene3D; 3.30.70.270; -; 2. DR Gene3D; 3.40.1170.60; -; 1. DR Gene3D; 1.10.150.20; 5' to 3' exonuclease, C-terminal subdomain; 1. DR Gene3D; 3.30.1490.100; DNA polymerase, Y-family, little finger domain; 1. DR InterPro; IPR043502; DNA/RNA_pol_sf. DR InterPro; IPR036775; DNA_pol_Y-fam_lit_finger_sf. DR InterPro; IPR017961; DNA_pol_Y-fam_little_finger. DR InterPro; IPR043128; Rev_trsase/Diguanyl_cyclase. DR InterPro; IPR041298; UBZ3. DR InterPro; IPR001126; UmuC. DR PANTHER; PTHR45873; DNA POLYMERASE ETA; 1. DR PANTHER; PTHR45873:SF1; DNA POLYMERASE ETA; 1. DR Pfam; PF00817; IMS; 1. DR Pfam; PF11799; IMS_C; 1. DR Pfam; PF21704; POLH-Rev1_HhH; 1. DR Pfam; PF18439; zf_UBZ; 1. DR PIRSF; PIRSF036603; DPol_eta; 1. DR SUPFAM; SSF56672; DNA/RNA polymerases; 1. DR SUPFAM; SSF100879; Lesion bypass DNA polymerase (Y-family), little finger domain; 1. DR PROSITE; PS50173; UMUC; 1. DR PROSITE; PS51907; ZF_UBZ3; 1. DR Genevisible; Q9JJN0; MM. PE 1: Evidence at protein level; KW DNA damage; DNA repair; DNA replication; DNA synthesis; DNA-binding; KW DNA-directed DNA polymerase; Isopeptide bond; Magnesium; Manganese; KW Metal-binding; Mutator protein; Nucleotidyltransferase; Nucleus; KW Reference proteome; Schiff base; Transferase; Ubl conjugation; Zinc; KW Zinc-finger. FT CHAIN 1..694 FT /note="DNA polymerase eta" FT /id="PRO_0000173987" FT DOMAIN 9..258 FT /note="UmuC" FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00216" FT ZN_FING 609..643 FT /note="UBZ3-type" FT /evidence="ECO:0000255|PROSITE-ProRule:PRU01255" FT REGION 565..598 FT /note="Disordered" FT /evidence="ECO:0000256|SAM:MobiDB-lite" FT REGION 651..694 FT /note="Disordered" FT /evidence="ECO:0000256|SAM:MobiDB-lite" FT MOTIF 682..689 FT /note="PIP-box" FT /evidence="ECO:0000250|UniProtKB:Q9Y253" FT COMPBIAS 579..598 FT /note="Polar residues" FT /evidence="ECO:0000256|SAM:MobiDB-lite" FT COMPBIAS 663..680 FT /note="Polar residues" FT /evidence="ECO:0000256|SAM:MobiDB-lite" FT ACT_SITE 116 FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00216" FT BINDING 13 FT /ligand="Mg(2+)" FT /ligand_id="ChEBI:CHEBI:18420" FT /ligand_label="1" FT /evidence="ECO:0000250|UniProtKB:Q9Y253" FT BINDING 13 FT /ligand="Mg(2+)" FT /ligand_id="ChEBI:CHEBI:18420" FT /ligand_label="2" FT /evidence="ECO:0000250|UniProtKB:Q9Y253" FT BINDING 13 FT /ligand="Mn(2+)" FT /ligand_id="ChEBI:CHEBI:29035" FT /ligand_label="1" FT /evidence="ECO:0000250|UniProtKB:Q9Y253" FT BINDING 13 FT /ligand="Mn(2+)" FT /ligand_id="ChEBI:CHEBI:29035" FT /ligand_label="2" FT /evidence="ECO:0000250|UniProtKB:Q9Y253" FT BINDING 14 FT /ligand="Mg(2+)" FT /ligand_id="ChEBI:CHEBI:18420" FT /ligand_label="1" FT /evidence="ECO:0000250|UniProtKB:Q9Y253" FT BINDING 14 FT /ligand="Mn(2+)" FT /ligand_id="ChEBI:CHEBI:29035" FT /ligand_label="1" FT /evidence="ECO:0000250|UniProtKB:Q9Y253" FT BINDING 61 FT /ligand="a 2'-deoxyribonucleoside 5'-triphosphate" FT /ligand_id="ChEBI:CHEBI:61560" FT /evidence="ECO:0000250|UniProtKB:Q9Y253" FT BINDING 115 FT /ligand="Mg(2+)" FT /ligand_id="ChEBI:CHEBI:18420" FT /ligand_label="1" FT /evidence="ECO:0000250|UniProtKB:Q9Y253" FT BINDING 115 FT /ligand="Mg(2+)" FT /ligand_id="ChEBI:CHEBI:18420" FT /ligand_label="2" FT /evidence="ECO:0000250|UniProtKB:Q9Y253" FT BINDING 115 FT /ligand="Mn(2+)" FT /ligand_id="ChEBI:CHEBI:29035" FT /ligand_label="1" FT /evidence="ECO:0000250|UniProtKB:Q9Y253" FT BINDING 115 FT /ligand="Mn(2+)" FT /ligand_id="ChEBI:CHEBI:29035" FT /ligand_label="2" FT /evidence="ECO:0000250|UniProtKB:Q9Y253" FT BINDING 116 FT /ligand="Mg(2+)" FT /ligand_id="ChEBI:CHEBI:18420" FT /ligand_label="2" FT /evidence="ECO:0000250|UniProtKB:Q9Y253" FT BINDING 116 FT /ligand="Mn(2+)" FT /ligand_id="ChEBI:CHEBI:29035" FT /ligand_label="2" FT /evidence="ECO:0000250|UniProtKB:Q9Y253" FT BINDING 616 FT /ligand="Zn(2+)" FT /ligand_id="ChEBI:CHEBI:29105" FT /evidence="ECO:0000255|PROSITE-ProRule:PRU01255" FT BINDING 619 FT /ligand="Zn(2+)" FT /ligand_id="ChEBI:CHEBI:29105" FT /evidence="ECO:0000255|PROSITE-ProRule:PRU01255" FT BINDING 631 FT /ligand="Zn(2+)" FT /ligand_id="ChEBI:CHEBI:29105" FT /evidence="ECO:0000255|PROSITE-ProRule:PRU01255" FT BINDING 635 FT /ligand="Zn(2+)" FT /ligand_id="ChEBI:CHEBI:29105" FT /evidence="ECO:0000255|PROSITE-ProRule:PRU01255" FT CROSSLNK 663 FT /note="Glycyl lysine isopeptide (Lys-Gly) (interchain with FT G-Cter in ubiquitin)" FT /evidence="ECO:0000250|UniProtKB:Q9Y253" FT CROSSLNK 667 FT /note="Glycyl lysine isopeptide (Lys-Gly) (interchain with FT G-Cter in ubiquitin)" FT /evidence="ECO:0000250|UniProtKB:Q9Y253" FT CROSSLNK 675 FT /note="Glycyl lysine isopeptide (Lys-Gly) (interchain with FT G-Cter in ubiquitin)" FT /evidence="ECO:0000250|UniProtKB:Q9Y253" FT CROSSLNK 690 FT /note="Glycyl lysine isopeptide (Lys-Gly) (interchain with FT G-Cter in ubiquitin)" FT /evidence="ECO:0000250|UniProtKB:Q9Y253" SQ SEQUENCE 694 AA; 76167 MW; 727895AB5DB84BC8 CRC64; MAPGQNRVVA LVDMDCFFVQ VEQRQNPHLR NKPCAVVQYK SWKGGGIIAV SYEARAFGVT RNMWADDAKK LCPDLLLAQV RESRGKANLT KYREASVEVM EIMSYFAVIE RASIDEAYID LTSAVQERLQ KLQGQPISAD LLPSTYIEGL PRGPTVEETV QKEAIRKQGL LQWLDSLQSD DPTSPDLRLT VGAMIVEEMR AAIESKTGFQ CSAGISHNKV LAKLACGLNK PNRQTLVSHG SVPQLFSQMP IRKIRSLGGK LGASVIEVLG IEYMGDLTQF TESQLQSHFG EKNGSWLYAM CRGIEHDPVK PRQLPKTIGC SKNFPGKTAL ATREQVQWWL LQLALELEER LTKDRNDNDR VATQLVVSIR FQGDRRLSSL RRCCALPRYD AHKMSQDAFA AIRNCNTSGI QTEWSPPLTM LFLCATKFSA AAPPACTDIT AFLSSDSSCQ PKVPIASSET RTQGSGPAVP TSKEAATSLA SFFQKAAKKQ RMKETSFVPL NTATEKLSSK PSLVFQSSQT TGSQSFFKQK SLLLQHTQLS NSAAPDPPQA SPAAQPSCLP AECVDSGPDD GAVKPVSSKA VSTEMNVAGD SPNVLDSPAY NSQEVTQRAT EDQVLCEKCD SLVPVWDMPE HTDYHFALEL QKSFLQPCTS KPQAIPAVSP QGKRNPKSPS ASSSKRLRPH GMQTLESFFK PLTH //