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Q9JJI8 (RL38_MOUSE) Reviewed, UniProtKB/Swiss-Prot

Last modified July 9, 2014. Version 98. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (3) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
60S ribosomal protein L38
Gene names
Name:Rpl38
OrganismMus musculus (Mouse) [Reference proteome]
Taxonomic identifier10090 [NCBI]
Taxonomic lineageEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus

Protein attributes

Sequence length70 AA.
Sequence statusComplete.
Sequence processingThe displayed sequence is further processed into a mature form.
Protein existenceEvidence at transcript level

General annotation (Comments)

Sequence similarities

Belongs to the ribosomal protein L38e family.

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Initiator methionine11Removed By similarity
Chain2 – 706960S ribosomal protein L38
PRO_0000215436

Amino acid modifications

Modified residue91N6-acetyllysine By similarity
Modified residue671N6-acetyllysine By similarity

Sequences

Sequence LengthMass (Da)Tools
Q9JJI8 [UniParc].

Last modified January 23, 2007. Version 3.
Checksum: FDD9A0B7BC98DBBA

FASTA708,204
        10         20         30         40         50         60 
MPRKIEEIKD FLLTARRKDA KSVKIKKNKD NVKFKVRCSR YLYTLVITDK EKAEKLKQSL 

        70 
PPGLAVKDLK 

« Hide

References

« Hide 'large scale' references
[1]"Positional cloning of tail-short gene."
Shimizu K.
Submitted (JAN-2000) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [MRNA].
[2]"The transcriptional landscape of the mammalian genome."
Carninci P., Kasukawa T., Katayama S., Gough J., Frith M.C., Maeda N., Oyama R., Ravasi T., Lenhard B., Wells C., Kodzius R., Shimokawa K., Bajic V.B., Brenner S.E., Batalov S., Forrest A.R., Zavolan M., Davis M.J. expand/collapse author list , Wilming L.G., Aidinis V., Allen J.E., Ambesi-Impiombato A., Apweiler R., Aturaliya R.N., Bailey T.L., Bansal M., Baxter L., Beisel K.W., Bersano T., Bono H., Chalk A.M., Chiu K.P., Choudhary V., Christoffels A., Clutterbuck D.R., Crowe M.L., Dalla E., Dalrymple B.P., de Bono B., Della Gatta G., di Bernardo D., Down T., Engstrom P., Fagiolini M., Faulkner G., Fletcher C.F., Fukushima T., Furuno M., Futaki S., Gariboldi M., Georgii-Hemming P., Gingeras T.R., Gojobori T., Green R.E., Gustincich S., Harbers M., Hayashi Y., Hensch T.K., Hirokawa N., Hill D., Huminiecki L., Iacono M., Ikeo K., Iwama A., Ishikawa T., Jakt M., Kanapin A., Katoh M., Kawasawa Y., Kelso J., Kitamura H., Kitano H., Kollias G., Krishnan S.P., Kruger A., Kummerfeld S.K., Kurochkin I.V., Lareau L.F., Lazarevic D., Lipovich L., Liu J., Liuni S., McWilliam S., Madan Babu M., Madera M., Marchionni L., Matsuda H., Matsuzawa S., Miki H., Mignone F., Miyake S., Morris K., Mottagui-Tabar S., Mulder N., Nakano N., Nakauchi H., Ng P., Nilsson R., Nishiguchi S., Nishikawa S., Nori F., Ohara O., Okazaki Y., Orlando V., Pang K.C., Pavan W.J., Pavesi G., Pesole G., Petrovsky N., Piazza S., Reed J., Reid J.F., Ring B.Z., Ringwald M., Rost B., Ruan Y., Salzberg S.L., Sandelin A., Schneider C., Schoenbach C., Sekiguchi K., Semple C.A., Seno S., Sessa L., Sheng Y., Shibata Y., Shimada H., Shimada K., Silva D., Sinclair B., Sperling S., Stupka E., Sugiura K., Sultana R., Takenaka Y., Taki K., Tammoja K., Tan S.L., Tang S., Taylor M.S., Tegner J., Teichmann S.A., Ueda H.R., van Nimwegen E., Verardo R., Wei C.L., Yagi K., Yamanishi H., Zabarovsky E., Zhu S., Zimmer A., Hide W., Bult C., Grimmond S.M., Teasdale R.D., Liu E.T., Brusic V., Quackenbush J., Wahlestedt C., Mattick J.S., Hume D.A., Kai C., Sasaki D., Tomaru Y., Fukuda S., Kanamori-Katayama M., Suzuki M., Aoki J., Arakawa T., Iida J., Imamura K., Itoh M., Kato T., Kawaji H., Kawagashira N., Kawashima T., Kojima M., Kondo S., Konno H., Nakano K., Ninomiya N., Nishio T., Okada M., Plessy C., Shibata K., Shiraki T., Suzuki S., Tagami M., Waki K., Watahiki A., Okamura-Oho Y., Suzuki H., Kawai J., Hayashizaki Y.
Science 309:1559-1563(2005) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
Strain: C57BL/6J.
Tissue: Embryo, Embryonic stem cell and Kidney.
[3]"The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
The MGC Project Team
Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
Strain: FVB/N-3.
Tissue: Mammary gland.
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AB037665 mRNA. Translation: BAB03500.1.
AK002659 mRNA. Translation: BAB22266.1.
AK010277 mRNA. Translation: BAB26814.1.
AK010518 mRNA. Translation: BAB27000.1.
AK012391 mRNA. Translation: BAB28208.1.
BC055346 mRNA. Translation: AAH55346.1.
CCDSCCDS36365.1.
RefSeqNP_001041522.1. NM_001048057.1.
NP_001041523.1. NM_001048058.1.
NP_075861.1. NM_023372.2.
XP_006534071.1. XM_006534008.1.
XP_006534072.1. XM_006534009.1.
UniGeneMm.238817.
Mm.371629.

3D structure databases

ProteinModelPortalQ9JJI8.
SMRQ9JJI8. Positions 2-70.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

BioGrid212354. 5 interactions.
IntActQ9JJI8. 5 interactions.
MINTMINT-1858856.

PTM databases

PhosphoSiteQ9JJI8.

Proteomic databases

MaxQBQ9JJI8.
PaxDbQ9JJI8.
PRIDEQ9JJI8.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblENSMUST00000077915; ENSMUSP00000102211; ENSMUSG00000057322.
ENSMUST00000082092; ENSMUSP00000080741; ENSMUSG00000057322.
ENSMUST00000106599; ENSMUSP00000102209; ENSMUSG00000057322.
ENSMUST00000106602; ENSMUSP00000102213; ENSMUSG00000057322.
GeneID67671.
KEGGmmu:67671.
UCSCuc007mfk.1. mouse.

Organism-specific databases

CTD6169.
MGIMGI:1914921. Rpl38.

Phylogenomic databases

eggNOGNOG323549.
GeneTreeENSGT00390000003718.
HOGENOMHOG000188979.
HOVERGENHBG001013.
InParanoidQ9JJI8.
KOK02923.
OMARKDASQA.
OrthoDBEOG79W98H.
PhylomeDBQ9JJI8.
TreeFamTF300215.

Gene expression databases

BgeeQ9JJI8.
CleanExMM_RPL38.
GenevestigatorQ9JJI8.

Family and domain databases

InterProIPR002675. Ribosomal_L38e.
[Graphical view]
PANTHERPTHR10965. PTHR10965. 1 hit.
PfamPF01781. Ribosomal_L38e. 1 hit.
[Graphical view]
ProDomPD010361. Ribosomal_L38e. 1 hit.
[Graphical view] [Entries sharing at least one domain]
ProtoNetSearch...

Other

NextBio325203.
PROQ9JJI8.
SOURCESearch...

Entry information

Entry nameRL38_MOUSE
AccessionPrimary (citable) accession number: Q9JJI8
Entry history
Integrated into UniProtKB/Swiss-Prot: July 26, 2002
Last sequence update: January 23, 2007
Last modified: July 9, 2014
This is version 98 of the entry and version 3 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families

Ribosomal proteins

Ribosomal proteins families and list of entries

MGD cross-references

Mouse Genome Database (MGD) cross-references in UniProtKB/Swiss-Prot