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Q9JJI8

- RL38_MOUSE

UniProt

Q9JJI8 - RL38_MOUSE

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Protein

60S ribosomal protein L38

Gene

Rpl38

Organism
Mus musculus (Mouse)
Status
Reviewed - Annotation score: 4 out of 5- Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

  1. structural constituent of ribosome Source: InterPro

GO - Biological processi

  1. 90S preribosome assembly Source: MGI
  2. axial mesoderm development Source: MGI
  3. middle ear morphogenesis Source: MGI
  4. ossification Source: MGI
  5. regulation of translation Source: MGI
  6. sensory perception of sound Source: MGI
  7. skeletal system development Source: MGI
  8. translation Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Enzyme and pathway databases

ReactomeiREACT_196445. SRP-dependent cotranslational protein targeting to membrane.
REACT_198524. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
REACT_198528. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).

Names & Taxonomyi

Protein namesi
Recommended name:
60S ribosomal protein L38
Gene namesi
Name:Rpl38
OrganismiMus musculus (Mouse)
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus
ProteomesiUP000000589: Chromosome 11

Organism-specific databases

MGIiMGI:1914921. Rpl38.

Subcellular locationi

GO - Cellular componenti

  1. cytosolic large ribosomal subunit Source: Ensembl
  2. eukaryotic 80S initiation complex Source: MGI
Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Initiator methioninei1 – 11RemovedBy similarity
Chaini2 – 706960S ribosomal protein L38PRO_0000215436Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Modified residuei9 – 91N6-acetyllysineBy similarity
Modified residuei67 – 671N6-acetyllysineBy similarity

Keywords - PTMi

Acetylation

Proteomic databases

MaxQBiQ9JJI8.
PaxDbiQ9JJI8.
PRIDEiQ9JJI8.

PTM databases

PhosphoSiteiQ9JJI8.

Expressioni

Gene expression databases

BgeeiQ9JJI8.
CleanExiMM_RPL38.
ExpressionAtlasiQ9JJI8. baseline and differential.
GenevestigatoriQ9JJI8.

Interactioni

Protein-protein interaction databases

BioGridi212354. 5 interactions.
IntActiQ9JJI8. 5 interactions.
MINTiMINT-1858856.

Structurei

3D structure databases

ProteinModelPortaliQ9JJI8.
SMRiQ9JJI8. Positions 2-70.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein L38e family.Curated

Phylogenomic databases

eggNOGiNOG323549.
GeneTreeiENSGT00390000003718.
HOGENOMiHOG000188979.
HOVERGENiHBG001013.
InParanoidiQ9JJI8.
KOiK02923.
OMAiRKDASQA.
OrthoDBiEOG79W98H.
PhylomeDBiQ9JJI8.
TreeFamiTF300215.

Family and domain databases

InterProiIPR002675. Ribosomal_L38e.
[Graphical view]
PANTHERiPTHR10965. PTHR10965. 1 hit.
PfamiPF01781. Ribosomal_L38e. 1 hit.
[Graphical view]
ProDomiPD010361. Ribosomal_L38e. 1 hit.
[Graphical view] [Entries sharing at least one domain]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

Q9JJI8-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MPRKIEEIKD FLLTARRKDA KSVKIKKNKD NVKFKVRCSR YLYTLVITDK
60 70
EKAEKLKQSL PPGLAVKDLK
Length:70
Mass (Da):8,204
Last modified:January 23, 2007 - v3
Checksum:iFDD9A0B7BC98DBBA
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AB037665 mRNA. Translation: BAB03500.1.
AK002659 mRNA. Translation: BAB22266.1.
AK010277 mRNA. Translation: BAB26814.1.
AK010518 mRNA. Translation: BAB27000.1.
AK012391 mRNA. Translation: BAB28208.1.
BC055346 mRNA. Translation: AAH55346.1.
CCDSiCCDS36365.1.
RefSeqiNP_001041522.1. NM_001048057.1.
NP_001041523.1. NM_001048058.1.
NP_075861.1. NM_023372.2.
XP_006534071.1. XM_006534008.1.
XP_006534072.1. XM_006534009.1.
UniGeneiMm.238817.
Mm.371629.

Genome annotation databases

EnsembliENSMUST00000077915; ENSMUSP00000102211; ENSMUSG00000057322.
ENSMUST00000082092; ENSMUSP00000080741; ENSMUSG00000057322.
ENSMUST00000106599; ENSMUSP00000102209; ENSMUSG00000057322.
ENSMUST00000106602; ENSMUSP00000102213; ENSMUSG00000057322.
GeneIDi67671.
KEGGimmu:67671.
UCSCiuc007mfk.1. mouse.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AB037665 mRNA. Translation: BAB03500.1 .
AK002659 mRNA. Translation: BAB22266.1 .
AK010277 mRNA. Translation: BAB26814.1 .
AK010518 mRNA. Translation: BAB27000.1 .
AK012391 mRNA. Translation: BAB28208.1 .
BC055346 mRNA. Translation: AAH55346.1 .
CCDSi CCDS36365.1.
RefSeqi NP_001041522.1. NM_001048057.1.
NP_001041523.1. NM_001048058.1.
NP_075861.1. NM_023372.2.
XP_006534071.1. XM_006534008.1.
XP_006534072.1. XM_006534009.1.
UniGenei Mm.238817.
Mm.371629.

3D structure databases

ProteinModelPortali Q9JJI8.
SMRi Q9JJI8. Positions 2-70.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

BioGridi 212354. 5 interactions.
IntActi Q9JJI8. 5 interactions.
MINTi MINT-1858856.

PTM databases

PhosphoSitei Q9JJI8.

Proteomic databases

MaxQBi Q9JJI8.
PaxDbi Q9JJI8.
PRIDEi Q9JJI8.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

Ensembli ENSMUST00000077915 ; ENSMUSP00000102211 ; ENSMUSG00000057322 .
ENSMUST00000082092 ; ENSMUSP00000080741 ; ENSMUSG00000057322 .
ENSMUST00000106599 ; ENSMUSP00000102209 ; ENSMUSG00000057322 .
ENSMUST00000106602 ; ENSMUSP00000102213 ; ENSMUSG00000057322 .
GeneIDi 67671.
KEGGi mmu:67671.
UCSCi uc007mfk.1. mouse.

Organism-specific databases

CTDi 6169.
MGIi MGI:1914921. Rpl38.

Phylogenomic databases

eggNOGi NOG323549.
GeneTreei ENSGT00390000003718.
HOGENOMi HOG000188979.
HOVERGENi HBG001013.
InParanoidi Q9JJI8.
KOi K02923.
OMAi RKDASQA.
OrthoDBi EOG79W98H.
PhylomeDBi Q9JJI8.
TreeFami TF300215.

Enzyme and pathway databases

Reactomei REACT_196445. SRP-dependent cotranslational protein targeting to membrane.
REACT_198524. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
REACT_198528. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).

Miscellaneous databases

NextBioi 325203.
PROi Q9JJI8.
SOURCEi Search...

Gene expression databases

Bgeei Q9JJI8.
CleanExi MM_RPL38.
ExpressionAtlasi Q9JJI8. baseline and differential.
Genevestigatori Q9JJI8.

Family and domain databases

InterProi IPR002675. Ribosomal_L38e.
[Graphical view ]
PANTHERi PTHR10965. PTHR10965. 1 hit.
Pfami PF01781. Ribosomal_L38e. 1 hit.
[Graphical view ]
ProDomi PD010361. Ribosomal_L38e. 1 hit.
[Graphical view ] [Entries sharing at least one domain ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "Positional cloning of tail-short gene."
    Shimizu K.
    Submitted (JAN-2000) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [MRNA].
  2. "The transcriptional landscape of the mammalian genome."
    Carninci P., Kasukawa T., Katayama S., Gough J., Frith M.C., Maeda N., Oyama R., Ravasi T., Lenhard B., Wells C., Kodzius R., Shimokawa K., Bajic V.B., Brenner S.E., Batalov S., Forrest A.R., Zavolan M., Davis M.J.
    , Wilming L.G., Aidinis V., Allen J.E., Ambesi-Impiombato A., Apweiler R., Aturaliya R.N., Bailey T.L., Bansal M., Baxter L., Beisel K.W., Bersano T., Bono H., Chalk A.M., Chiu K.P., Choudhary V., Christoffels A., Clutterbuck D.R., Crowe M.L., Dalla E., Dalrymple B.P., de Bono B., Della Gatta G., di Bernardo D., Down T., Engstrom P., Fagiolini M., Faulkner G., Fletcher C.F., Fukushima T., Furuno M., Futaki S., Gariboldi M., Georgii-Hemming P., Gingeras T.R., Gojobori T., Green R.E., Gustincich S., Harbers M., Hayashi Y., Hensch T.K., Hirokawa N., Hill D., Huminiecki L., Iacono M., Ikeo K., Iwama A., Ishikawa T., Jakt M., Kanapin A., Katoh M., Kawasawa Y., Kelso J., Kitamura H., Kitano H., Kollias G., Krishnan S.P., Kruger A., Kummerfeld S.K., Kurochkin I.V., Lareau L.F., Lazarevic D., Lipovich L., Liu J., Liuni S., McWilliam S., Madan Babu M., Madera M., Marchionni L., Matsuda H., Matsuzawa S., Miki H., Mignone F., Miyake S., Morris K., Mottagui-Tabar S., Mulder N., Nakano N., Nakauchi H., Ng P., Nilsson R., Nishiguchi S., Nishikawa S., Nori F., Ohara O., Okazaki Y., Orlando V., Pang K.C., Pavan W.J., Pavesi G., Pesole G., Petrovsky N., Piazza S., Reed J., Reid J.F., Ring B.Z., Ringwald M., Rost B., Ruan Y., Salzberg S.L., Sandelin A., Schneider C., Schoenbach C., Sekiguchi K., Semple C.A., Seno S., Sessa L., Sheng Y., Shibata Y., Shimada H., Shimada K., Silva D., Sinclair B., Sperling S., Stupka E., Sugiura K., Sultana R., Takenaka Y., Taki K., Tammoja K., Tan S.L., Tang S., Taylor M.S., Tegner J., Teichmann S.A., Ueda H.R., van Nimwegen E., Verardo R., Wei C.L., Yagi K., Yamanishi H., Zabarovsky E., Zhu S., Zimmer A., Hide W., Bult C., Grimmond S.M., Teasdale R.D., Liu E.T., Brusic V., Quackenbush J., Wahlestedt C., Mattick J.S., Hume D.A., Kai C., Sasaki D., Tomaru Y., Fukuda S., Kanamori-Katayama M., Suzuki M., Aoki J., Arakawa T., Iida J., Imamura K., Itoh M., Kato T., Kawaji H., Kawagashira N., Kawashima T., Kojima M., Kondo S., Konno H., Nakano K., Ninomiya N., Nishio T., Okada M., Plessy C., Shibata K., Shiraki T., Suzuki S., Tagami M., Waki K., Watahiki A., Okamura-Oho Y., Suzuki H., Kawai J., Hayashizaki Y.
    Science 309:1559-1563(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Strain: C57BL/6J.
    Tissue: Embryo, Embryonic stem cell and Kidney.
  3. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
    The MGC Project Team
    Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Strain: FVB/N-3.
    Tissue: Mammary gland.

Entry informationi

Entry nameiRL38_MOUSE
AccessioniPrimary (citable) accession number: Q9JJI8
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 26, 2002
Last sequence update: January 23, 2007
Last modified: October 29, 2014
This is version 101 of the entry and version 3 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. MGD cross-references
    Mouse Genome Database (MGD) cross-references in UniProtKB/Swiss-Prot
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3