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Protein

RING finger protein 32

Gene

Rnf32

Organism
Mus musculus (Mouse)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

May play a role in sperm formation.

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Zinc fingeri129 – 17143RING-type 1; atypicalPROSITE-ProRule annotationAdd
BLAST
Zinc fingeri295 – 35864RING-type 2; atypicalPROSITE-ProRule annotationAdd
BLAST

GO - Molecular functioni

Complete GO annotation...

Keywords - Ligandi

Metal-binding, Zinc

Names & Taxonomyi

Protein namesi
Recommended name:
RING finger protein 32
Alternative name(s):
Limb region protein 2
Gene namesi
Name:Rnf32
Synonyms:Lmbr2
OrganismiMus musculus (Mouse)
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus
Proteomesi
  • UP000000589 Componenti: Chromosome 5

Organism-specific databases

MGIiMGI:1861747. Rnf32.

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Cytoplasm

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 368368RING finger protein 32PRO_0000245534Add
BLAST

Proteomic databases

PaxDbiQ9JIT1.
PRIDEiQ9JIT1.

Expressioni

Gene expression databases

BgeeiQ9JIT1.
CleanExiMM_RNF32.
ExpressionAtlasiQ9JIT1. baseline and differential.
GenevisibleiQ9JIT1. MM.

Interactioni

Protein-protein interaction databases

STRINGi10090.ENSMUSP00000001247.

Structurei

3D structure databases

ProteinModelPortaliQ9JIT1.
SMRiQ9JIT1. Positions 126-175.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini188 – 21730IQPROSITE-ProRule annotationAdd
BLAST

Sequence similaritiesi

Contains 1 IQ domain.PROSITE-ProRule annotation
Contains 2 RING-type zinc fingers.PROSITE-ProRule annotation

Zinc finger

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Zinc fingeri129 – 17143RING-type 1; atypicalPROSITE-ProRule annotationAdd
BLAST
Zinc fingeri295 – 35864RING-type 2; atypicalPROSITE-ProRule annotationAdd
BLAST

Keywords - Domaini

Repeat, Zinc-finger

Phylogenomic databases

eggNOGiKOG0800. Eukaryota.
ENOG41121N2. LUCA.
GeneTreeiENSGT00390000003759.
HOGENOMiHOG000007992.
HOVERGENiHBG082459.
InParanoidiQ9JIT1.
OMAiKNKGHSS.
PhylomeDBiQ9JIT1.
TreeFamiTF329796.

Family and domain databases

Gene3Di3.30.40.10. 2 hits.
InterProiIPR000048. IQ_motif_EF-hand-BS.
IPR027370. Znf-RING_LisH.
IPR001841. Znf_RING.
IPR013083. Znf_RING/FYVE/PHD.
[Graphical view]
PfamiPF00612. IQ. 1 hit.
PF13639. zf-RING_2. 1 hit.
PF13445. zf-RING_UBOX. 1 hit.
[Graphical view]
SMARTiSM00184. RING. 2 hits.
[Graphical view]
PROSITEiPS50096. IQ. 1 hit.
PS50089. ZF_RING_2. 2 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q9JIT1-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MLRNKDRSSN KGNLAVTAVA LQDHLLHDLQ LGHLSVADPC KIKARKKEKK
60 70 80 90 100
SKSLKRDATA IIDTGLRKST EGPNMEDPEK EYVLDPTPPP LTLAQKLGLL
110 120 130 140 150
PPPPLPLSSD EWERVKQRSL LQGDSIQPCP ICKEEFELHP QVLLSCSHVF
160 170 180 190 200
HRACLQAFEK FTNKKTCPLC RKNQYQTRVI HDGARLFRVK CATRIQAYWR
210 220 230 240 250
GYIVRKWYRN LRKIIPPSDA KLRRKFFEEK FTEISHRILC SYNTNIDELF
260 270 280 290 300
SEIDVCLAVN RSILQQLDER CGQIITKEDW EKIQAQAAHH EIYECSICLT
310 320 330 340 350
PLSFHGDGRQ AAIGTSSQRP RETVLLSCAH LFHNACLLAL EEFSLGDNAP
360
FHVCPLCRSC YQKKIVEC
Length:368
Mass (Da):42,139
Last modified:October 1, 2000 - v1
Checksum:i23F8DE23EF4D02AC
GO

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti84 – 841L → I in BAB24557 (PubMed:16141072).Curated
Sequence conflicti99 – 991L → I in BAB24557 (PubMed:16141072).Curated
Sequence conflicti113 – 1131E → G in BAB24242 (PubMed:16141072).Curated
Sequence conflicti123 – 1231G → R in BAB24242 (PubMed:16141072).Curated
Sequence conflicti245 – 2451N → K in BAB24557 (PubMed:16141072).Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF190664 mRNA. Translation: AAF91091.1.
AK005795 mRNA. Translation: BAB24242.1.
AK006379 mRNA. Translation: BAB24557.1.
BC089493 mRNA. Translation: AAH89493.1.
CCDSiCCDS39041.1.
RefSeqiNP_001276686.1. NM_001289757.1.
NP_067445.3. NM_021470.6.
XP_006535838.1. XM_006535775.2.
XP_006535839.1. XM_006535776.2.
XP_006535840.1. XM_006535777.2.
XP_006535841.1. XM_006535778.2.
XP_006535842.1. XM_006535779.2.
XP_006535843.1. XM_006535780.1.
XP_006535844.1. XM_006535781.2.
UniGeneiMm.487302.
Mm.87352.

Genome annotation databases

EnsembliENSMUST00000001247; ENSMUSP00000001247; ENSMUSG00000029130.
ENSMUST00000160246; ENSMUSP00000124657; ENSMUSG00000029130.
ENSMUST00000168460; ENSMUSP00000132213; ENSMUSG00000029130.
GeneIDi56874.
KEGGimmu:56874.
UCSCiuc008wuc.2. mouse.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF190664 mRNA. Translation: AAF91091.1.
AK005795 mRNA. Translation: BAB24242.1.
AK006379 mRNA. Translation: BAB24557.1.
BC089493 mRNA. Translation: AAH89493.1.
CCDSiCCDS39041.1.
RefSeqiNP_001276686.1. NM_001289757.1.
NP_067445.3. NM_021470.6.
XP_006535838.1. XM_006535775.2.
XP_006535839.1. XM_006535776.2.
XP_006535840.1. XM_006535777.2.
XP_006535841.1. XM_006535778.2.
XP_006535842.1. XM_006535779.2.
XP_006535843.1. XM_006535780.1.
XP_006535844.1. XM_006535781.2.
UniGeneiMm.487302.
Mm.87352.

3D structure databases

ProteinModelPortaliQ9JIT1.
SMRiQ9JIT1. Positions 126-175.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi10090.ENSMUSP00000001247.

Proteomic databases

PaxDbiQ9JIT1.
PRIDEiQ9JIT1.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSMUST00000001247; ENSMUSP00000001247; ENSMUSG00000029130.
ENSMUST00000160246; ENSMUSP00000124657; ENSMUSG00000029130.
ENSMUST00000168460; ENSMUSP00000132213; ENSMUSG00000029130.
GeneIDi56874.
KEGGimmu:56874.
UCSCiuc008wuc.2. mouse.

Organism-specific databases

CTDi140545.
MGIiMGI:1861747. Rnf32.

Phylogenomic databases

eggNOGiKOG0800. Eukaryota.
ENOG41121N2. LUCA.
GeneTreeiENSGT00390000003759.
HOGENOMiHOG000007992.
HOVERGENiHBG082459.
InParanoidiQ9JIT1.
OMAiKNKGHSS.
PhylomeDBiQ9JIT1.
TreeFamiTF329796.

Miscellaneous databases

ChiTaRSiRnf32. mouse.
PROiQ9JIT1.
SOURCEiSearch...

Gene expression databases

BgeeiQ9JIT1.
CleanExiMM_RNF32.
ExpressionAtlasiQ9JIT1. baseline and differential.
GenevisibleiQ9JIT1. MM.

Family and domain databases

Gene3Di3.30.40.10. 2 hits.
InterProiIPR000048. IQ_motif_EF-hand-BS.
IPR027370. Znf-RING_LisH.
IPR001841. Znf_RING.
IPR013083. Znf_RING/FYVE/PHD.
[Graphical view]
PfamiPF00612. IQ. 1 hit.
PF13639. zf-RING_2. 1 hit.
PF13445. zf-RING_UBOX. 1 hit.
[Graphical view]
SMARTiSM00184. RING. 2 hits.
[Graphical view]
PROSITEiPS50096. IQ. 1 hit.
PS50089. ZF_RING_2. 2 hits.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "A novel candidate gene for mouse and human preaxial polydactyly with altered expression in limbs of hemimelic extra-toes mutant mice."
    Clark R.M., Marker P.C., Kingsley D.M.
    Genomics 67:19-27(2000) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [MRNA].
    Strain: C57BL/10.
  2. "The transcriptional landscape of the mammalian genome."
    Carninci P., Kasukawa T., Katayama S., Gough J., Frith M.C., Maeda N., Oyama R., Ravasi T., Lenhard B., Wells C., Kodzius R., Shimokawa K., Bajic V.B., Brenner S.E., Batalov S., Forrest A.R., Zavolan M., Davis M.J.
    , Wilming L.G., Aidinis V., Allen J.E., Ambesi-Impiombato A., Apweiler R., Aturaliya R.N., Bailey T.L., Bansal M., Baxter L., Beisel K.W., Bersano T., Bono H., Chalk A.M., Chiu K.P., Choudhary V., Christoffels A., Clutterbuck D.R., Crowe M.L., Dalla E., Dalrymple B.P., de Bono B., Della Gatta G., di Bernardo D., Down T., Engstrom P., Fagiolini M., Faulkner G., Fletcher C.F., Fukushima T., Furuno M., Futaki S., Gariboldi M., Georgii-Hemming P., Gingeras T.R., Gojobori T., Green R.E., Gustincich S., Harbers M., Hayashi Y., Hensch T.K., Hirokawa N., Hill D., Huminiecki L., Iacono M., Ikeo K., Iwama A., Ishikawa T., Jakt M., Kanapin A., Katoh M., Kawasawa Y., Kelso J., Kitamura H., Kitano H., Kollias G., Krishnan S.P., Kruger A., Kummerfeld S.K., Kurochkin I.V., Lareau L.F., Lazarevic D., Lipovich L., Liu J., Liuni S., McWilliam S., Madan Babu M., Madera M., Marchionni L., Matsuda H., Matsuzawa S., Miki H., Mignone F., Miyake S., Morris K., Mottagui-Tabar S., Mulder N., Nakano N., Nakauchi H., Ng P., Nilsson R., Nishiguchi S., Nishikawa S., Nori F., Ohara O., Okazaki Y., Orlando V., Pang K.C., Pavan W.J., Pavesi G., Pesole G., Petrovsky N., Piazza S., Reed J., Reid J.F., Ring B.Z., Ringwald M., Rost B., Ruan Y., Salzberg S.L., Sandelin A., Schneider C., Schoenbach C., Sekiguchi K., Semple C.A., Seno S., Sessa L., Sheng Y., Shibata Y., Shimada H., Shimada K., Silva D., Sinclair B., Sperling S., Stupka E., Sugiura K., Sultana R., Takenaka Y., Taki K., Tammoja K., Tan S.L., Tang S., Taylor M.S., Tegner J., Teichmann S.A., Ueda H.R., van Nimwegen E., Verardo R., Wei C.L., Yagi K., Yamanishi H., Zabarovsky E., Zhu S., Zimmer A., Hide W., Bult C., Grimmond S.M., Teasdale R.D., Liu E.T., Brusic V., Quackenbush J., Wahlestedt C., Mattick J.S., Hume D.A., Kai C., Sasaki D., Tomaru Y., Fukuda S., Kanamori-Katayama M., Suzuki M., Aoki J., Arakawa T., Iida J., Imamura K., Itoh M., Kato T., Kawaji H., Kawagashira N., Kawashima T., Kojima M., Kondo S., Konno H., Nakano K., Ninomiya N., Nishio T., Okada M., Plessy C., Shibata K., Shiraki T., Suzuki S., Tagami M., Waki K., Watahiki A., Okamura-Oho Y., Suzuki H., Kawai J., Hayashizaki Y.
    Science 309:1559-1563(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Strain: C57BL/6J.
    Tissue: Testis.
  3. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
    The MGC Project Team
    Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Tissue: Testis.
  4. Cited for: IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
    Tissue: Testis.

Entry informationi

Entry nameiRNF32_MOUSE
AccessioniPrimary (citable) accession number: Q9JIT1
Secondary accession number(s): Q9D9X0, Q9DAJ3
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 11, 2006
Last sequence update: October 1, 2000
Last modified: June 8, 2016
This is version 108 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Miscellaneous

No coding region alterations in either Hemimelic extra-toes (Hx) or Hammertoe (Hm) mutant mice was detected.

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. MGD cross-references
    Mouse Genome Database (MGD) cross-references in UniProtKB/Swiss-Prot
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.