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Protein

28S ribosomal protein S34, mitochondrial

Gene

Mrps34

Organism
Mus musculus (Mouse)
Status
Reviewed-Annotation score: Annotation score: 4 out of 5-Experimental evidence at protein leveli

Functioni

Required for mitochondrial translation, plays a role in maintaining the stability of the small ribosomal subunit and the 12S rRNA that are required for mitoribosome formation.1 Publication

GO - Molecular functioni

GO - Biological processi

  • mitochondrial translation Source: UniProtKB
Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Enzyme and pathway databases

ReactomeiR-MMU-5389840. Mitochondrial translation elongation.
R-MMU-5419276. Mitochondrial translation termination.

Names & Taxonomyi

Protein namesi
Recommended name:
28S ribosomal protein S34, mitochondrial
Short name:
MRP-S34
Short name:
S34mt
Alternative name(s):
T-complex expressed gene 2 protein
Gene namesi
Name:Mrps34
Synonyms:Tce2
OrganismiMus musculus (Mouse)
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus
Proteomesi
  • UP000000589 Componenti: Chromosome 17

Organism-specific databases

MGIiMGI:1930188. Mrps34.

Subcellular locationi

GO - Cellular componenti

  • mitochondrion Source: UniProtKB
  • ribosome Source: UniProtKB-KW
Complete GO annotation...

Keywords - Cellular componenti

Mitochondrion

Pathology & Biotechi

Mutagenesis

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Mutagenesisi68 – 681L → P: Decreases protein expression. Decreases mitochodrial ribosomal subunits and translationally competent mitoribosomes. Mutant mice show heart hypertrophy and liver steatosis. 1 Publication

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Initiator methionineiRemovedBy similarity
Chaini2 – 21821728S ribosomal protein S34, mitochondrialPRO_0000087731Add
BLAST

Proteomic databases

EPDiQ9JIK9.
MaxQBiQ9JIK9.
PaxDbiQ9JIK9.
PRIDEiQ9JIK9.

PTM databases

iPTMnetiQ9JIK9.
PhosphoSiteiQ9JIK9.

Expressioni

Tissue specificityi

Widely expressed (at protein liver).1 Publication

Gene expression databases

BgeeiQ9JIK9.
CleanExiMM_MRPS34.
GenevisibleiQ9JIK9. MM.

Interactioni

Subunit structurei

Component of the mitochondrial ribosome small subunit (28S) which comprises a 12S rRNA and about 30 distinct proteins.

Protein-protein interaction databases

IntActiQ9JIK9. 2 interactions.
MINTiMINT-1849242.
STRINGi10090.ENSMUSP00000045111.

Structurei

3D structure databases

ProteinModelPortaliQ9JIK9.
SMRiQ9JIK9. Positions 2-214.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiENOG410IGV1. Eukaryota.
ENOG4111FKH. LUCA.
GeneTreeiENSGT00390000008964.
HOGENOMiHOG000154216.
HOVERGENiHBG036130.
InParanoidiQ9JIK9.
KOiK17412.
OMAiHDEPCYW.
OrthoDBiEOG7KQ22W.
PhylomeDBiQ9JIK9.
TreeFamiTF320386.

Family and domain databases

InterProiIPR032053. MRP-S34.
[Graphical view]
PfamiPF16053. MRP-S34. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

Q9JIK9-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MARKKVRPRL IAELARRVRA LREQRNQPRD SQLYALDYET LTRPHSGRRL
60 70 80 90 100
PVRAWADVRR ESRLLQLLAR LPLFGLGRLV TRKSWLWQHD EPCYWRLTRV
110 120 130 140 150
RPDYTAQNLD HGRAWGILTF KGKSEDTARE IEQVMYHDWR LVPKHEEEAF
160 170 180 190 200
TAFTAKPEDR LNSVPYPPLL RAMILAERQK NGDTSVQEPL LNLERTRMRP
210
WDYPAKQETK GRAKGTPV
Length:218
Mass (Da):25,827
Last modified:October 1, 2000 - v1
Checksum:i1C8D03A1F13BD85B
GO

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti5 – 51K → E in BAB24970 (PubMed:16141072).Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF220294 Genomic DNA. Translation: AAF69478.1.
AK002285 mRNA. Translation: BAB21988.1.
AK004049 mRNA. Translation: BAB23142.1.
AK007337 mRNA. Translation: BAB24970.1.
AK019922 mRNA. No translation available.
BC024336 mRNA. Translation: AAH24336.1.
CCDSiCCDS28502.1.
RefSeqiNP_075749.1. NM_023260.1.
UniGeneiMm.328851.

Genome annotation databases

EnsembliENSMUST00000043907; ENSMUSP00000045111; ENSMUSG00000038880.
ENSMUST00000154236; ENSMUSP00000120985; ENSMUSG00000038880.
GeneIDi79044.
KEGGimmu:79044.
UCSCiuc008ayy.1. mouse.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF220294 Genomic DNA. Translation: AAF69478.1.
AK002285 mRNA. Translation: BAB21988.1.
AK004049 mRNA. Translation: BAB23142.1.
AK007337 mRNA. Translation: BAB24970.1.
AK019922 mRNA. No translation available.
BC024336 mRNA. Translation: AAH24336.1.
CCDSiCCDS28502.1.
RefSeqiNP_075749.1. NM_023260.1.
UniGeneiMm.328851.

3D structure databases

ProteinModelPortaliQ9JIK9.
SMRiQ9JIK9. Positions 2-214.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

IntActiQ9JIK9. 2 interactions.
MINTiMINT-1849242.
STRINGi10090.ENSMUSP00000045111.

PTM databases

iPTMnetiQ9JIK9.
PhosphoSiteiQ9JIK9.

Proteomic databases

EPDiQ9JIK9.
MaxQBiQ9JIK9.
PaxDbiQ9JIK9.
PRIDEiQ9JIK9.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSMUST00000043907; ENSMUSP00000045111; ENSMUSG00000038880.
ENSMUST00000154236; ENSMUSP00000120985; ENSMUSG00000038880.
GeneIDi79044.
KEGGimmu:79044.
UCSCiuc008ayy.1. mouse.

Organism-specific databases

CTDi65993.
MGIiMGI:1930188. Mrps34.

Phylogenomic databases

eggNOGiENOG410IGV1. Eukaryota.
ENOG4111FKH. LUCA.
GeneTreeiENSGT00390000008964.
HOGENOMiHOG000154216.
HOVERGENiHBG036130.
InParanoidiQ9JIK9.
KOiK17412.
OMAiHDEPCYW.
OrthoDBiEOG7KQ22W.
PhylomeDBiQ9JIK9.
TreeFamiTF320386.

Enzyme and pathway databases

ReactomeiR-MMU-5389840. Mitochondrial translation elongation.
R-MMU-5419276. Mitochondrial translation termination.

Miscellaneous databases

PROiQ9JIK9.
SOURCEiSearch...

Gene expression databases

BgeeiQ9JIK9.
CleanExiMM_MRPS34.
GenevisibleiQ9JIK9. MM.

Family and domain databases

InterProiIPR032053. MRP-S34.
[Graphical view]
PfamiPF16053. MRP-S34. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Eleven densely clustered genes, six of them novel, in 176 kb of mouse T-complex DNA."
    Kargul G.J., Nagaraja R., Shimada T., Grahovac M.J., Lim M.K., Nakashima H., Waeltz P., Ma P., Chen E., Schlessinger D., Ko M.S.H.
    Genome Res. 10:916-923(2000) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
    Strain: 129/SvJ.
  2. "The transcriptional landscape of the mammalian genome."
    Carninci P., Kasukawa T., Katayama S., Gough J., Frith M.C., Maeda N., Oyama R., Ravasi T., Lenhard B., Wells C., Kodzius R., Shimokawa K., Bajic V.B., Brenner S.E., Batalov S., Forrest A.R., Zavolan M., Davis M.J.
    , Wilming L.G., Aidinis V., Allen J.E., Ambesi-Impiombato A., Apweiler R., Aturaliya R.N., Bailey T.L., Bansal M., Baxter L., Beisel K.W., Bersano T., Bono H., Chalk A.M., Chiu K.P., Choudhary V., Christoffels A., Clutterbuck D.R., Crowe M.L., Dalla E., Dalrymple B.P., de Bono B., Della Gatta G., di Bernardo D., Down T., Engstrom P., Fagiolini M., Faulkner G., Fletcher C.F., Fukushima T., Furuno M., Futaki S., Gariboldi M., Georgii-Hemming P., Gingeras T.R., Gojobori T., Green R.E., Gustincich S., Harbers M., Hayashi Y., Hensch T.K., Hirokawa N., Hill D., Huminiecki L., Iacono M., Ikeo K., Iwama A., Ishikawa T., Jakt M., Kanapin A., Katoh M., Kawasawa Y., Kelso J., Kitamura H., Kitano H., Kollias G., Krishnan S.P., Kruger A., Kummerfeld S.K., Kurochkin I.V., Lareau L.F., Lazarevic D., Lipovich L., Liu J., Liuni S., McWilliam S., Madan Babu M., Madera M., Marchionni L., Matsuda H., Matsuzawa S., Miki H., Mignone F., Miyake S., Morris K., Mottagui-Tabar S., Mulder N., Nakano N., Nakauchi H., Ng P., Nilsson R., Nishiguchi S., Nishikawa S., Nori F., Ohara O., Okazaki Y., Orlando V., Pang K.C., Pavan W.J., Pavesi G., Pesole G., Petrovsky N., Piazza S., Reed J., Reid J.F., Ring B.Z., Ringwald M., Rost B., Ruan Y., Salzberg S.L., Sandelin A., Schneider C., Schoenbach C., Sekiguchi K., Semple C.A., Seno S., Sessa L., Sheng Y., Shibata Y., Shimada H., Shimada K., Silva D., Sinclair B., Sperling S., Stupka E., Sugiura K., Sultana R., Takenaka Y., Taki K., Tammoja K., Tan S.L., Tang S., Taylor M.S., Tegner J., Teichmann S.A., Ueda H.R., van Nimwegen E., Verardo R., Wei C.L., Yagi K., Yamanishi H., Zabarovsky E., Zhu S., Zimmer A., Hide W., Bult C., Grimmond S.M., Teasdale R.D., Liu E.T., Brusic V., Quackenbush J., Wahlestedt C., Mattick J.S., Hume D.A., Kai C., Sasaki D., Tomaru Y., Fukuda S., Kanamori-Katayama M., Suzuki M., Aoki J., Arakawa T., Iida J., Imamura K., Itoh M., Kato T., Kawaji H., Kawagashira N., Kawashima T., Kojima M., Kondo S., Konno H., Nakano K., Ninomiya N., Nishio T., Okada M., Plessy C., Shibata K., Shiraki T., Suzuki S., Tagami M., Waki K., Watahiki A., Okamura-Oho Y., Suzuki H., Kawai J., Hayashizaki Y.
    Science 309:1559-1563(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Strain: C57BL/6J.
    Tissue: Embryo, Kidney, Pancreas and Pituitary.
  3. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
    The MGC Project Team
    Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Tissue: Colon.
  4. Cited for: IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
    Tissue: Brain, Brown adipose tissue, Heart, Kidney, Liver, Lung, Spleen and Testis.
  5. "Mutation in MRPS34 compromises protein synthesis and causes mitochondrial dysfunction."
    Richman T.R., Ermer J.A., Davies S.M., Perks K.L., Viola H.M., Shearwood A.M., Hool L.C., Rackham O., Filipovska A.
    PLoS Genet. 11:E1005089-E1005089(2015) [PubMed] [Europe PMC] [Abstract]
    Cited for: FUNCTION, MUTAGENESIS OF LEU-68, SUBCELLULAR LOCATION, TISSUE SPECIFICITY.

Entry informationi

Entry nameiRT34_MOUSE
AccessioniPrimary (citable) accession number: Q9JIK9
Secondary accession number(s): Q9D2B0, Q9D957
Entry historyi
Integrated into UniProtKB/Swiss-Prot: October 19, 2002
Last sequence update: October 1, 2000
Last modified: June 8, 2016
This is version 102 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. MGD cross-references
    Mouse Genome Database (MGD) cross-references in UniProtKB/Swiss-Prot

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.