Unreviewed, UniProtKB/TrEMBL Q9JIK0 (Q9JIK0_RAT)

Names and origin

Protein names

Submitted name:
    Voltage gated N-type calcium channel alpha1B EMBL AAF70136.1

Gene names

Name:

Cacna1b RGD 628852

Organism

Rattus norvegicus (Rat) EMBL AAF70136.1

Taxonomic identifier

10116 [NCBI]

Taxonomic lineage

Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Glires › Rodentia › Sciurognathi › Muroidea › Muridae › Murinae › Rattus

Protein attributes

Sequence length	103 AA.
Sequence status	Fragment.
Sequence processing	The displayed sequence is not processed.
Protein existence	Evidence at transcript level.

Ontologies

Gene Ontology (GO)
Biological process	calcium ion transport Ref.1 Inferred from mutant phenotype. Source: RGD positive regulation of neurotransmitter secretion Inferred from mutant phenotype. Source: RGD response to ethanol Inferred from expression pattern. Source: RGD response to organic cyclic substance Inferred from direct assay. Source: RGD response to testosterone stimulus Inferred from mutant phenotype. Source: RGD
Cellular component	cell soma Inferred from direct assay. Source: RGD dendritic shaft Inferred from direct assay. Source: RGD integral to membrane Inferred from electronic annotation. Source: InterPro nerve terminal Inferred from direct assay. Source: RGD plasma membrane Ref.1 Inferred from direct assay. Source: RGD synaptosome Inferred from direct assay. Source: RGD
Molecular function	voltage-gated calcium channel activity Ref.1 Inferred from mutant phenotype. Source: RGD
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Experimental info
	Non-terminal residue	1	1	EMBL AAF70136.1
	Non-terminal residue	103	1	EMBL AAF70136.1

Sequences

	Sequence		Length	Mass (Da)
	Q9JIK0-1 [UniParc]. Last modified October 1, 2000. Version 1. Checksum: 191F388D6915EE2A	FASTA	103	11,469
	10 20 30 40 50 60 EEMEEAANQK LALQKAKEVA EVSPMSAANI SIAAFVKQTR GTVSRSSSVS SVNSPRQQNS 70 80 90 100 AKARSVWEQR ASQLRLQNLR ASCEALYSEM DPEERLRYAS TRH

References

[1]

"Alternative splicing in the cytoplasmic II-III loop of the N-type Ca channel alpha 1B subunit: functional differences are beta subunit-specific." Pan J.Q., Lipscombe D. J. Neurosci. 20:4769-4775(2000) [PubMed: 10864934] [Abstract] Cited for: NUCLEOTIDE SEQUENCE. Strain: Sprague-Dawley EMBL AAF70136.1.

Cross-references

Sequence databases
EMBLGenBankDDBJ	AF222337 mRNA. Translation: AAF70136.1.
IPI	IPI00200639.
UniGene	Rn.85880
3D structure databases
ModBase	Search...
Protein-protein interaction databases
STRING	Q9JIK0.
Genome annotation databases
Ensembl	ENSRNOT00000006162; ENSRNOP00000006162; ENSRNOG00000004560; Rattus norvegicus. [Genome view] ENSRNOT00000040510; ENSRNOP00000045615; ENSRNOG00000004560; Rattus norvegicus. [Genome view] ENSRNOT00000042895; ENSRNOP00000046546; ENSRNOG00000004560; Rattus norvegicus. [Genome view] ENSRNOT00000045118; ENSRNOP00000041710; ENSRNOG00000004560; Rattus norvegicus. [Genome view] ENSRNOT00000048945; ENSRNOP00000044223; ENSRNOG00000004560; Rattus norvegicus. [Genome view] ENSRNOT00000065645; ENSRNOP00000063686; ENSRNOG00000004560; Rattus norvegicus. [Genome view]
Phylogenomic databases
HOVERGEN	Q9JIK0.
Gene expression databases
ArrayExpress	Q9JIK0.
Genevestigator	Q9JIK0.
Family and domain databases
InterPro	IPR005447. VDCC_N_a1su. [Graphical view]
PANTHER	PTHR10037:SF58. NVDCCAlpha1. 1 hit.
ProtoNet	Search...

Entry information

Entry name

Q9JIK0_RAT

Accession

Primary (citable) accession number: Q9JIK0

Entry history

Integrated into UniProtKB/TrEMBL:	October 1, 2000
Last sequence update:	October 1, 2000
Last modified:	November 3, 2009
This is version 27 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)