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Protein
Submitted name:

Androgen receptor-related apoptosis-associated protein CBL27

Gene

Tnrc6b

Organism
Rattus norvegicus (Rat)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

  1. nucleotide binding Source: InterPro
  2. poly(A) RNA binding Source: Ensembl

GO - Biological processi

  1. gene silencing by RNA Source: Ensembl
  2. positive regulation of nuclear-transcribed mRNA poly(A) tail shortening Source: Ensembl
Complete GO annotation...

Keywords - Molecular functioni

ReceptorImported

Enzyme and pathway databases

ReactomeiREACT_299523. Post-transcriptional silencing by small RNAs.

Names & Taxonomyi

Protein namesi
Submitted name:
Androgen receptor-related apoptosis-associated protein CBL27Imported
Gene namesi
Name:Tnrc6bImported
Synonyms:Cbl27Imported
OrganismiRattus norvegicus (Rat)Imported
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus

Organism-specific databases

RGDi621428. Tnrc6b.

Expressioni

Gene expression databases

ExpressionAtlasiQ9JHZ1. baseline and differential.
GenevestigatoriQ9JHZ1.

Structurei

3D structure databases

ProteinModelPortaliQ9JHZ1.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

HOVERGENiHBG073539.

Family and domain databases

Gene3Di3.30.70.330. 1 hit.
InterProiIPR012677. Nucleotide-bd_a/b_plait.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q9JHZ1-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MWKNHISSRN TTPLPRPPPG LTNPKPASPW SSTAPRSVRG WGTQDSRIAS
60 70 80 90 100
ASTWSDGGSV RPSYWLVLHN LTPQIDGSTL RTICMQHGPL LTFHLNLTQG
110 120 130 140 150
TALIRYSTKQ EAAKAQTALH MCVLGNTTIL AEFATEDEVS RFLAQAQPPT
160 170 180 190 200
PAATPSAPAT GWQSLETSQN QADPVGPALN LFGGSTGLGQ WSSSAGGSSG
210 220 230 240
ADLAGTSLWG PPNYSSSLWG VPTVEDPHRM GSPAPLLPGD LLGGGSDSI
Length:249
Mass (Da):26,072
Last modified:October 1, 2000 - v1
Checksum:iEF58F970CE37D021
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF275151 mRNA. Translation: AAF86977.1.
UniGeneiRn.17120.

Genome annotation databases

UCSCiRGD:621428. rat.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF275151 mRNA. Translation: AAF86977.1.
UniGeneiRn.17120.

3D structure databases

ProteinModelPortaliQ9JHZ1.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

UCSCiRGD:621428. rat.

Organism-specific databases

RGDi621428. Tnrc6b.

Phylogenomic databases

HOVERGENiHBG073539.

Enzyme and pathway databases

ReactomeiREACT_299523. Post-transcriptional silencing by small RNAs.

Gene expression databases

ExpressionAtlasiQ9JHZ1. baseline and differential.
GenevestigatoriQ9JHZ1.

Family and domain databases

Gene3Di3.30.70.330. 1 hit.
InterProiIPR012677. Nucleotide-bd_a/b_plait.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Cloning and Characterization of a Novel Androgen Receptor-Related Apoptosis-Associated Gene in the Rat Spleen."
    Chan M.T.W., Ng C.C.Y., Lim E.K.B., Huynh H.T.
    Submitted (JUN-2000) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: Sprague-DawleyImported.
    Tissue: SpleenImported.

Entry informationi

Entry nameiQ9JHZ1_RAT
AccessioniPrimary (citable) accession number: Q9JHZ1
Entry historyi
Integrated into UniProtKB/TrEMBL: October 1, 2000
Last sequence update: October 1, 2000
Last modified: April 1, 2015
This is version 72 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.