Q9JHU4 (DYHC1_MOUSE)
Reviewed,
UniProtKB/Swiss-Prot
Last modified
August 10, 2010.
Version 83.
History...
Names and origin
| Protein names | Recommended name: Cytoplasmic dynein 1 heavy chain 1 Alternative name(s): Cytoplasmic dynein heavy chain 1 Dynein heavy chain, cytosolic | ||||
| Gene names |
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| Organism | Mus musculus (Mouse) | ||||
| Taxonomic identifier | 10090 [NCBI] | ||||
| Taxonomic lineage | Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Glires › Rodentia › Sciurognathi › Muroidea › Muridae › Murinae › Mus |
Protein attributes
| Sequence length | 4644 AA. |
| Sequence status | Complete. |
| Protein existence | Evidence at protein level. |
General annotation (Comments)
| Function | Cytoplasmic dynein 1 acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. Dynein has ATPase activity; the force-producing power stroke is thought to occur on release of ADP. |
| Subunit structure | Homodimer. The cytoplasmic dynein 1 complex consists of two catalytic heavy chains (HCs) and a number of non-catalytic subunits presented by intermediate chains (ICs), light intermediate chains (LICs) and light chains (LCs); the composition seems to vary in respect to the IC, LIC and LC composition. The heavy chain homodimer serves as a scaffold for the probable homodimeric assembly of the respective non-catalytic subunits. The ICs and LICs bind directly to the HC dimer and dynein LCs assemble on the IC dimer. Interacts with DYNC1LI1; DYNC1LI1 and DYNC1LI2 bind mutually exclusive to DYNC1H1. Interacts with DYNC1LI2; DYNC1LI1 and DYNC1LI2 bind mutually exclusive to DYNC1H1. Interacts with DYNC1I2 By similarity. |
| Subcellular location | |
| Domain | Dynein heavy chains probably consist of an N-terminal stem (which binds cargo and interacts with other dynein components), and the head or motor domain. The motor contains six tandemly-linked AAA domains in the head, which form a ring. A stalk-like structure (formed by two of the coiled coil domains) protrudes between AAA 4 and AAA 5 and terminates in a microtubule-binding site. A seventh domain may also contribute to this ring; it is not clear whether the N-terminus or the C-terminus forms this extra domain. There are four well-conserved and two non-conserved ATPase sites, one per AAA domain. Probably only one of these (within AAA 1) actually hydrolyzes ATP, the others may serve a regulatory function. |
| Involvement in disease | Note=Defects in Dync1h1 are the cause of the 'Legs at odd angles' (LOA) phenotype, an autosomal dominant trait where affected animals display unusual twisting of the body and clenching of the hindlimbs when suspended by the tail. Heterozygotes suffer age-related progressive loss of muscle tone and locomotor ability without major reduction in life-span while homozygotes show a more severe phenotype with an inability to move or feed, and die within 24 hours of birth. LOA mutants display defects in migration of facial motor neuron cell bodies and impaired retrograde transport in spinal cord motor neurons. Ref.4 Note=Defects in Dync1h1 are the cause of the Cramping 1 (Cra1) phenotype, an autosomal dominant trait where affected animals display unusual twisting of the body and clenching of the hindlimbs when suspended by the tail. Heterozygotes suffer age-related progressive loss of muscle tone and locomotor ability without major reduction in life-span while homozygotes show a more severe phenotype with an inability to move or feed, and die within 24 hours of birth. |
| Sequence similarities | Belongs to the dynein heavy chain family. |
Ontologies
| Keywords | |
|---|---|
| Biological process | Transport |
| Cellular component | Cytoplasm Dynein Microtubule |
| Disease | Disease mutation |
| Domain | Coiled coil Repeat |
| Ligand | ATP-binding Nucleotide-binding |
| Molecular function | Motor protein |
| PTM | Acetylation Phosphoprotein |
| Technical term | 3D-structure |
| Gene Ontology (GO) | |
| Biological process | transport Inferred from electronic annotation. Source: UniProtKB-KW |
| Cellular component | dynein complex Inferred from electronic annotation. Source: UniProtKB-KW microtubuleInferred from electronic annotation. Source: UniProtKB-KW |
| Molecular function | ATP binding Inferred from electronic annotation. Source: UniProtKB-KW ATPase activityInferred from electronic annotation. Source: InterPro microtubule motor activityInferred from electronic annotation. Source: InterPro protein bindingInferred from physical interaction. Source: IntAct |
| Complete GO annotation... | |
Binary interactions
With | Entry | #Exp. | IntAct | Notes |
|---|---|---|---|---|
| Csf1 | P07141 | 1 | EBI-645061,EBI-777188 |
Sequence annotation (Features)
| Feature key | Position(s) | Length | Description | Graphical view | Feature identifier | |||||||||||||||||||||||||
Molecule processing | ||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Chain | 1 – 4644 | 4644 | Cytoplasmic dynein 1 heavy chain 1 | PRO_0000114628 | ||||||||||||||||||||||||||
Regions | ||||||||||||||||||||||||||||||
| Nucleotide binding | 1904 – 1911 | 8 | ATP Potential | |||||||||||||||||||||||||||
| Nucleotide binding | 2222 – 2229 | 8 | ATP Potential | |||||||||||||||||||||||||||
| Nucleotide binding | 2593 – 2600 | 8 | ATP Potential | |||||||||||||||||||||||||||
| Nucleotide binding | 2935 – 2942 | 8 | ATP Potential | |||||||||||||||||||||||||||
| Region | 1 – 1865 | 1865 | Stem By similarity | |||||||||||||||||||||||||||
| Region | 446 – 701 | 256 | Interaction with DYNC1I2 By similarity | |||||||||||||||||||||||||||
| Region | 649 – 800 | 152 | Interaction with DYNC1LI2 By similarity | |||||||||||||||||||||||||||
| Region | 1866 – 2097 | 232 | AAA 1 By similarity | |||||||||||||||||||||||||||
| Region | 2178 – 2450 | 273 | AAA 2 By similarity | |||||||||||||||||||||||||||
| Region | 2554 – 2803 | 250 | AAA 3 By similarity | |||||||||||||||||||||||||||
| Region | 2897 – 3166 | 270 | AAA 4 By similarity | |||||||||||||||||||||||||||
| Region | 3187 – 3498 | 312 | Stalk By similarity | |||||||||||||||||||||||||||
| Region | 3551 – 3780 | 230 | AAA 5 By similarity | |||||||||||||||||||||||||||
| Region | 4003 – 4219 | 217 | AAA 6 By similarity | |||||||||||||||||||||||||||
| Coiled coil | 48 – 69 | 22 | Potential | |||||||||||||||||||||||||||
| Coiled coil | 179 – 200 | 22 | Potential | |||||||||||||||||||||||||||
| Coiled coil | 453 – 476 | 24 | Potential | |||||||||||||||||||||||||||
| Coiled coil | 541 – 564 | 24 | Potential | |||||||||||||||||||||||||||
| Coiled coil | 1169 – 1201 | 33 | Potential | |||||||||||||||||||||||||||
| Coiled coil | 1229 – 1250 | 22 | Potential | |||||||||||||||||||||||||||
| Coiled coil | 1355 – 1371 | 17 | Potential | |||||||||||||||||||||||||||
| Coiled coil | 3187 – 3273 | 87 | Potential | |||||||||||||||||||||||||||
| Coiled coil | 3394 – 3498 | 105 | Potential | |||||||||||||||||||||||||||
| Coiled coil | 3735 – 3798 | 64 | Potential | |||||||||||||||||||||||||||
Amino acid modifications | ||||||||||||||||||||||||||||||
| Modified residue | 369 | 1 | N6-acetyllysine By similarity | |||||||||||||||||||||||||||
| Modified residue | 392 | 1 | N6-acetyllysine By similarity | |||||||||||||||||||||||||||
| Modified residue | 752 | 1 | N6-acetyllysine By similarity | |||||||||||||||||||||||||||
| Modified residue | 1123 | 1 | N6-acetyllysine By similarity | |||||||||||||||||||||||||||
| Modified residue | 2408 | 1 | Phosphoserine By similarity | |||||||||||||||||||||||||||
| Modified residue | 2759 | 1 | Phosphoserine By similarity | |||||||||||||||||||||||||||
| Modified residue | 3377 | 1 | Phosphotyrosine Ref.2 | |||||||||||||||||||||||||||
| Modified residue | 3478 | 1 | N6-acetyllysine By similarity | |||||||||||||||||||||||||||
| Modified residue | 4216 | 1 | Phosphothreonine Ref.3 | |||||||||||||||||||||||||||
| Modified residue | 4219 | 1 | Phosphothreonine Ref.3 | |||||||||||||||||||||||||||
| Modified residue | 4281 | 1 | N6-acetyllysine By similarity | |||||||||||||||||||||||||||
| Modified residue | 4366 | 1 | Phosphoserine By similarity | |||||||||||||||||||||||||||
Natural variations | ||||||||||||||||||||||||||||||
| Natural variant | 580 | 1 | F → Y in LOA. Ref.4 | |||||||||||||||||||||||||||
| Natural variant | 1055 | 1 | Y → C in CRA1. Ref.4 | |||||||||||||||||||||||||||
Secondary structure | ||||||||||||||||||||||||||||||
Helix Strand Turn | ||||||||||||||||||||||||||||||
| Helix | 3260 – 3295 | 36 | ||||||||||||||||||||||||||||
| Helix | 3299 – 3306 | 8 | ||||||||||||||||||||||||||||
| Helix | 3313 – 3325 | 13 | ||||||||||||||||||||||||||||
| Helix | 3333 – 3336 | 4 | ||||||||||||||||||||||||||||
| Helix | 3339 – 3341 | 3 | ||||||||||||||||||||||||||||
| Helix | 3345 – 3351 | 7 | ||||||||||||||||||||||||||||
| Helix | 3354 – 3356 | 3 | ||||||||||||||||||||||||||||
| Helix | 3359 – 3368 | 10 | ||||||||||||||||||||||||||||
| Turn | 3369 – 3371 | 3 | ||||||||||||||||||||||||||||
| Helix | 3377 – 3383 | 7 | ||||||||||||||||||||||||||||
| Helix | 3390 – 3427 | 38 | ||||||||||||||||||||||||||||
Sequences
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References
| « Hide 'large scale' references | |
| [1] | "Complete cDNA sequence of murine cytoplasmic dynein heavy chain." Sasaki S., Shionoya A., Hirotsune S. Submitted (JUL-2000) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [MRNA]. Strain: FVB. |
| [2] | "Large-scale identification and evolution indexing of tyrosine phosphorylation sites from murine brain." Ballif B.A., Carey G.R., Sunyaev S.R., Gygi S.P. J. Proteome Res. 7:311-318(2008) [PubMed: 18034455] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT TYR-3377, MASS SPECTROMETRY. Tissue: Brain. |
| [3] | "Large-scale phosphorylation analysis of mouse liver." Villen J., Beausoleil S.A., Gerber S.A., Gygi S.P. Proc. Natl. Acad. Sci. U.S.A. 104:1488-1493(2007) [PubMed: 17242355] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT THR-4216 AND THR-4219, MASS SPECTROMETRY. Tissue: Liver. |
| [4] | "Mutations in dynein link motor neuron degeneration to defects in retrograde transport." Hafezparast M., Klocke R., Ruhrberg C., Marquardt A., Ahmad-Annuar A., Bowen S., Lalli G., Witherden A.S., Hummerich H., Nicholson S., Morgan P.J., Oozageer R., Priestley J.V., Averill S., King V.R., Ball S., Peters J., Toda T. Fisher E.M.C.Science 300:808-812(2003) [PubMed: 12730604] [Abstract] Cited for: VARIANT LOA TYR-580, VARIANT CRA1 CYS-1055. |
| + | Additional computationally mapped references. |
Cross-references
Sequence databases | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| EMBL GenBank DDBJ | AY004877 mRNA. Translation: AAF91078.1. | ||||||||||||
| IPI | IPI00119876. | ||||||||||||
| UniGene | Mm.181430. | ||||||||||||
3D structure databases | |||||||||||||
| PDBe RCSB PDB PDBj |
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| ProteinModelPortal | Q9JHU4. | ||||||||||||
| SMR | Q9JHU4. Positions 1903-1932, 2586-2747, 2931-2956. | ||||||||||||
| ModBase | Search... | ||||||||||||
Protein-protein interaction databases | |||||||||||||
| IntAct | Q9JHU4. 17 interactions. | ||||||||||||
| STRING | Q9JHU4. | ||||||||||||
PTM databases | |||||||||||||
| PhosphoSite | Q9JHU4. | ||||||||||||
Proteomic databases | |||||||||||||
| PRIDE | Q9JHU4. | ||||||||||||
Genome annotation databases | |||||||||||||
| Ensembl | ENSMUST00000018851; ENSMUSP00000018851; ENSMUSG00000018707; Mus musculus. [Genome view] | ||||||||||||
| UCSC | uc007pbo.1. mouse. | ||||||||||||
Organism-specific databases | |||||||||||||
| MGI | MGI:103147. Dync1h1. | ||||||||||||
Phylogenomic databases | |||||||||||||
| HOGENOM | HBG358329. | ||||||||||||
| HOVERGEN | HBG096595. | ||||||||||||
| InParanoid | Q9JHU4. | ||||||||||||
| PhylomeDB | Q9JHU4. | ||||||||||||
Gene expression databases | |||||||||||||
| ArrayExpress | Q9JHU4. | ||||||||||||
| Bgee | Q9JHU4. | ||||||||||||
| CleanEx | MM_DYNC1H1. | ||||||||||||
| Genevestigator | Q9JHU4. | ||||||||||||
| GermOnline | ENSMUSG00000018707. Mus musculus. | ||||||||||||
Family and domain databases | |||||||||||||
| InterPro | IPR003593. ATPase_AAA+_core. IPR011704. ATPase_AAA-5. IPR004273. Dynein_heavy. IPR013594. Dynein_heavy_N-1. IPR013602. Dynein_heavy_N-2. [Graphical view] | ||||||||||||
| Pfam | PF07728. AAA_5. 2 hits. PF08385. DHC_N1. 1 hit. PF08393. DHC_N2. 1 hit. PF03028. Dynein_heavy. 1 hit. [Graphical view] | ||||||||||||
| SMART | SM00382. AAA. 4 hits. [Graphical view] | ||||||||||||
| ProtoNet | Search... | ||||||||||||
Other Resources | |||||||||||||
| SOURCE | Search... | ||||||||||||
Entry information
| Entry name | DYHC1_MOUSE | ||||||||
| Accession | Primary (citable) accession number: Q9JHU4 | ||||||||
| Entry history |
| ||||||||
| Entry status | Reviewed (UniProtKB/Swiss-Prot) | ||||||||
| Annotation project | HPI (Human Proteome Initiative) | ||||||||
Relevant documents
| MGD cross-references Mouse Genome Database (MGD) cross-references in UniProtKB/Swiss-Prot |
| PDB cross-references Index of Protein Data Bank (PDB) cross-references |
| SIMILARITY comments Index of protein domains and families |

Clusters with


