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Protein

AMME syndrome candidate gene 1 protein homolog

Gene

Ammecr1

Organism
Mus musculus (Mouse)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at transcript leveli

Names & Taxonomyi

Protein namesi
Recommended name:
AMME syndrome candidate gene 1 protein homolog
Gene namesi
Name:Ammecr1
OrganismiMus musculus (Mouse)
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus
Proteomesi
  • UP000000589 Componenti: Chromosome X

Organism-specific databases

MGIiMGI:1860206. Ammecr1.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 344344AMME syndrome candidate gene 1 protein homologPRO_0000142367Add
BLAST

Proteomic databases

EPDiQ9JHT5.
MaxQBiQ9JHT5.
PaxDbiQ9JHT5.
PRIDEiQ9JHT5.

PTM databases

iPTMnetiQ9JHT5.
PhosphoSiteiQ9JHT5.

Expressioni

Gene expression databases

BgeeiQ9JHT5.
GenevisibleiQ9JHT5. MM.

Interactioni

Protein-protein interaction databases

STRINGi10090.ENSMUSP00000036085.

Structurei

3D structure databases

ProteinModelPortaliQ9JHT5.
SMRiQ9JHT5. Positions 172-277.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini130 – 324195AMMECR1PROSITE-ProRule annotationAdd
BLAST

Compositional bias

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Compositional biasi14 – 9784Gly/Ser-richAdd
BLAST
Compositional biasi121 – 1299Poly-Ser

Sequence similaritiesi

Contains 1 AMMECR1 domain.PROSITE-ProRule annotation

Phylogenomic databases

eggNOGiKOG3274. Eukaryota.
COG2078. LUCA.
GeneTreeiENSGT00390000010397.
HOGENOMiHOG000223418.
HOVERGENiHBG056408.
InParanoidiQ9JHT5.
OMAiGCCEAVK.
OrthoDBiEOG7PVWQN.
PhylomeDBiQ9JHT5.
TreeFamiTF314680.

Family and domain databases

Gene3Di3.30.700.20. 1 hit.
InterProiIPR023473. AMMECR1.
IPR002733. AMMECR1_domain.
IPR027485. AMMECR1_N.
[Graphical view]
PANTHERiPTHR13016. PTHR13016. 2 hits.
PfamiPF01871. AMMECR1. 1 hit.
[Graphical view]
SUPFAMiSSF143447. SSF143447. 1 hit.
TIGRFAMsiTIGR00296. TIGR00296. 1 hit.
PROSITEiPS51112. AMMECR1. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q9JHT5-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAAGCCGVKK QKLSSSPPSG SGGGGGASSS SHCSGESQCR AGELGLGGAG
60 70 80 90 100
TRLNGLGGLS GGGGSGGGGG CPLSPPQGCG GGGGGGGGGG SGSGGGGISL
110 120 130 140 150
SPPLSCGVGT LLSTPAAATA SSPSSSSSSP GSRKMVVSAE MCCFCFDVLY
160 170 180 190 200
CHLYGYQQPR TPRFTNEPYP LFVTWKIGRD KRLRGCIGTF SAMNLHSGLR
210 220 230 240 250
EYTLTSALKD SRFPPMTRDE LPRLFCSVSL LTNFEDVCDY LDWEVGVHGI
260 270 280 290 300
RIEFINEKGS KRTATYLPEV AKEQGWDHIQ TIDSLLRKGG YKAPITNEFR
310 320 330 340
KTIKLTRYRS EKMTLSYAEY LAHRQHHHFQ NGIGHPLPPY NHYS
Length:344
Mass (Da):36,031
Last modified:October 1, 2000 - v1
Checksum:iBA35788884DF393D
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AJ243485 mRNA. Translation: CAB95767.1.
AK051736 mRNA. Translation: BAC34745.1.
CCDSiCCDS30452.1.
RefSeqiNP_062369.1. NM_019496.3.
UniGeneiMm.143724.

Genome annotation databases

EnsembliENSMUST00000041317; ENSMUSP00000036085; ENSMUSG00000042225.
GeneIDi56068.
KEGGimmu:56068.
UCSCiuc009umc.1. mouse.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AJ243485 mRNA. Translation: CAB95767.1.
AK051736 mRNA. Translation: BAC34745.1.
CCDSiCCDS30452.1.
RefSeqiNP_062369.1. NM_019496.3.
UniGeneiMm.143724.

3D structure databases

ProteinModelPortaliQ9JHT5.
SMRiQ9JHT5. Positions 172-277.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi10090.ENSMUSP00000036085.

PTM databases

iPTMnetiQ9JHT5.
PhosphoSiteiQ9JHT5.

Proteomic databases

EPDiQ9JHT5.
MaxQBiQ9JHT5.
PaxDbiQ9JHT5.
PRIDEiQ9JHT5.

Protocols and materials databases

DNASUi56068.
Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSMUST00000041317; ENSMUSP00000036085; ENSMUSG00000042225.
GeneIDi56068.
KEGGimmu:56068.
UCSCiuc009umc.1. mouse.

Organism-specific databases

CTDi9949.
MGIiMGI:1860206. Ammecr1.

Phylogenomic databases

eggNOGiKOG3274. Eukaryota.
COG2078. LUCA.
GeneTreeiENSGT00390000010397.
HOGENOMiHOG000223418.
HOVERGENiHBG056408.
InParanoidiQ9JHT5.
OMAiGCCEAVK.
OrthoDBiEOG7PVWQN.
PhylomeDBiQ9JHT5.
TreeFamiTF314680.

Miscellaneous databases

ChiTaRSiAmmecr1. mouse.
PROiQ9JHT5.
SOURCEiSearch...

Gene expression databases

BgeeiQ9JHT5.
GenevisibleiQ9JHT5. MM.

Family and domain databases

Gene3Di3.30.700.20. 1 hit.
InterProiIPR023473. AMMECR1.
IPR002733. AMMECR1_domain.
IPR027485. AMMECR1_N.
[Graphical view]
PANTHERiPTHR13016. PTHR13016. 2 hits.
PfamiPF01871. AMMECR1. 1 hit.
[Graphical view]
SUPFAMiSSF143447. SSF143447. 1 hit.
TIGRFAMsiTIGR00296. TIGR00296. 1 hit.
PROSITEiPS51112. AMMECR1. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Identification and characterization of mouse orthologs of the AMMECR1 and FACL4 genes deleted in AMME syndrome: orthology of Xq22.3 and MmuXF1-F3."
    Vitelli F., Meloni I., Fineschi S., Favara F., Tiziana Storlazzi C., Rocchi M., Renieri A.
    Cytogenet. Cell Genet. 88:259-263(2000) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [MRNA].
    Tissue: Embryo.
  2. "The transcriptional landscape of the mammalian genome."
    Carninci P., Kasukawa T., Katayama S., Gough J., Frith M.C., Maeda N., Oyama R., Ravasi T., Lenhard B., Wells C., Kodzius R., Shimokawa K., Bajic V.B., Brenner S.E., Batalov S., Forrest A.R., Zavolan M., Davis M.J.
    , Wilming L.G., Aidinis V., Allen J.E., Ambesi-Impiombato A., Apweiler R., Aturaliya R.N., Bailey T.L., Bansal M., Baxter L., Beisel K.W., Bersano T., Bono H., Chalk A.M., Chiu K.P., Choudhary V., Christoffels A., Clutterbuck D.R., Crowe M.L., Dalla E., Dalrymple B.P., de Bono B., Della Gatta G., di Bernardo D., Down T., Engstrom P., Fagiolini M., Faulkner G., Fletcher C.F., Fukushima T., Furuno M., Futaki S., Gariboldi M., Georgii-Hemming P., Gingeras T.R., Gojobori T., Green R.E., Gustincich S., Harbers M., Hayashi Y., Hensch T.K., Hirokawa N., Hill D., Huminiecki L., Iacono M., Ikeo K., Iwama A., Ishikawa T., Jakt M., Kanapin A., Katoh M., Kawasawa Y., Kelso J., Kitamura H., Kitano H., Kollias G., Krishnan S.P., Kruger A., Kummerfeld S.K., Kurochkin I.V., Lareau L.F., Lazarevic D., Lipovich L., Liu J., Liuni S., McWilliam S., Madan Babu M., Madera M., Marchionni L., Matsuda H., Matsuzawa S., Miki H., Mignone F., Miyake S., Morris K., Mottagui-Tabar S., Mulder N., Nakano N., Nakauchi H., Ng P., Nilsson R., Nishiguchi S., Nishikawa S., Nori F., Ohara O., Okazaki Y., Orlando V., Pang K.C., Pavan W.J., Pavesi G., Pesole G., Petrovsky N., Piazza S., Reed J., Reid J.F., Ring B.Z., Ringwald M., Rost B., Ruan Y., Salzberg S.L., Sandelin A., Schneider C., Schoenbach C., Sekiguchi K., Semple C.A., Seno S., Sessa L., Sheng Y., Shibata Y., Shimada H., Shimada K., Silva D., Sinclair B., Sperling S., Stupka E., Sugiura K., Sultana R., Takenaka Y., Taki K., Tammoja K., Tan S.L., Tang S., Taylor M.S., Tegner J., Teichmann S.A., Ueda H.R., van Nimwegen E., Verardo R., Wei C.L., Yagi K., Yamanishi H., Zabarovsky E., Zhu S., Zimmer A., Hide W., Bult C., Grimmond S.M., Teasdale R.D., Liu E.T., Brusic V., Quackenbush J., Wahlestedt C., Mattick J.S., Hume D.A., Kai C., Sasaki D., Tomaru Y., Fukuda S., Kanamori-Katayama M., Suzuki M., Aoki J., Arakawa T., Iida J., Imamura K., Itoh M., Kato T., Kawaji H., Kawagashira N., Kawashima T., Kojima M., Kondo S., Konno H., Nakano K., Ninomiya N., Nishio T., Okada M., Plessy C., Shibata K., Shiraki T., Suzuki S., Tagami M., Waki K., Watahiki A., Okamura-Oho Y., Suzuki H., Kawai J., Hayashizaki Y.
    Science 309:1559-1563(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Strain: C57BL/6J.
    Tissue: Spinal ganglion.

Entry informationi

Entry nameiAMMR1_MOUSE
AccessioniPrimary (citable) accession number: Q9JHT5
Entry historyi
Integrated into UniProtKB/Swiss-Prot: October 10, 2003
Last sequence update: October 1, 2000
Last modified: June 8, 2016
This is version 92 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. MGD cross-references
    Mouse Genome Database (MGD) cross-references in UniProtKB/Swiss-Prot
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.