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Q9JHM2 (Q9JHM2_RAT) Unreviewed, UniProtKB/TrEMBL

Last modified May 29, 2013. Version 97. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesSubmitted name:
MHC class I protein EMBL CAB86389.1
Submitted name:
RT1 class I, A3 EMBL CAE83929.1
Gene names
Name:RT1-A3 EMBL CAB86389.1 RGD 1359610
Synonyms:AA926063 RGD 1303072, B3galt4 RGD 620328, Cdk2ap1-ps1 RGD 1591984, Col11a2 RGD 1593281, Daxx RGD 621227, Hsd17b8 RGD 1303158, Kifc1 RGD 1359118, LOC224733l-1 RGD 1594401, LOC224733l-2 RGD 1594400, Phf1 RGD 1303205, Rps25-ps1 RGD 1591986, RT1-A1 RGD 1595924, RT1-A2 RGD 1595923, RT1-DOa RGD 3477, RT1-Hb RGD 1595866, RT1-Ke4 RGD 1593280, Rxrb RGD 3611, Sacm2l-ps1 RGD 1594399, Sacm2l-ps2 RGD 1594398, Sec61-ps RGD 1591985, Syngap1 RGD 621090
OrganismRattus norvegicus (Rat) EMBL CAB86389.1
Taxonomic identifier10116 [NCBI]
Taxonomic lineageEukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Glires › Rodentia › Sciurognathi › Muroidea › Muridae › Murinae › Rattus

Protein attributes

Sequence length369 AA.
Sequence statusComplete.
Sequence processingThe displayed sequence is further processed into a mature form.
Protein existenceInferred from homology

General annotation (Comments)

Function

Involved in the presentation of foreign antigens to the immune system By similarity. SAAS SAAS003006

Sequence similarities

Belongs to the MHC class I family. RuleBase RU004439

Contains 1 Ig-like C1-type (immunoglobulin-like) domain. SAAS SAAS003006

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Signal peptide1 – 2121 Potential EMBL CAB86389.1
Chain22 – 369348MHC class I protein EMBL CAB86389.1
PRO_5000066050

Sequences

Sequence LengthMass (Da)Tools
Q9JHM2 [UniParc].

Last modified October 1, 2000. Version 1.
Checksum: 86FE99B5BAEAF90A

FASTA36941,717
        10         20         30         40         50         60 
MAPRTLLLLL AAALAPTQTQ AGSHSLRYFD IAVSRPGLGE PRFIIVGYVD DREVMRFDSD 

        70         80         90        100        110        120 
AENPRMKPRA RWMEREGPEY WERQTRKVKE KEQIFRDNLR TLLRYYNQSE GGSHTVQRLS 

       130        140        150        160        170        180 
GCDVGSDGSL LRGYNQHAYD GRDYIALNED LKTWTAADTA AQITKNKWER DGEAERRRAY 

       190        200        210        220        230        240 
LEGECVEWLR SYLAPRKETL LRSDPPKAHV TLHPRPEGDV TLRCWALGFY PADITLTWQL 

       250        260        270        280        290        300 
NGEDLTQDME FVETRPAGDG TFQKWASVVV PSGEEQNYTC LVEHEGLPKP LTQRWEPSPS 

       310        320        330        340        350        360 
TNTNMGIDVT SVVLGAVAVF VVLAIIGAVV CVVRRRRRRR NTGGKGDYTP ARGRDSSQSS 


DVSLPDCKA

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References

[1]"Physical mapping and evolution of the centromeric class I gene-containing region of the rat MHC."
Walter L., Gunther E.
Immunogenetics 51:829-837(2000) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: BN EMBL CAB86389.1.
[2]Boehm S., Borzym K., Gelling S., Gimmel V., Heitmann K., Kosiura A., Lang N., Lehrack S., Thiel J., Sontag M., Hurt P., Himmelbauer H., Sudbrak R., Reinhardt R.
Submitted (DEC-2003) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
Strain: Brown Norway EMBL CAE83929.1.
[3]"The genomic sequence and comparative analysis of the rat major histocompatibility complex."
Hurt P., Walter L., Sudbrak R., Klages S., Mueller I., Shiina T., Inoko H., Lehrach H., Guenther E., Reinhardt R., Himmelbauer H.
Genome Res. 14:631-639(2004) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: Brown Norway EMBL CAE83929.1.
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		AJ277139 Genomic DNA. Translation: CAB86389.1.
BX883042 Genomic DNA. Translation: CAE83929.1.
IPIIPI00199635.
RefSeqNP_001008830.1. NM_001008830.1.
UniGeneRn.116787.
Rn.217243.
Rn.219012.

3D structure databases

SMRQ9JHM2. Positions 22-297.
ModBaseSearch...

Protein-protein interaction databases

STRING10116.ENSRNOP00000000544.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID309627.
KEGGrno:309627.

Organism-specific databases

CTD309627.
RGD1359610. RT1-A3.

Phylogenomic databases

eggNOGNOG42056.
HOGENOMHOG000296917.
HOVERGENHBG016709.
KOK06751.
OrthoDBEOG4F4SBG.

Gene expression databases

GenevestigatorQ9JHM2.

Family and domain databases

Gene3D2.60.40.10. 1 hit.
3.30.500.10. 1 hit.
InterProIPR007110. Ig-like_dom.
IPR013783. Ig-like_fold.
IPR003006. Ig/MHC_CS.
IPR003597. Ig_C1-set.
IPR011161. MHC_I-like_Ag-recog.
IPR011162. MHC_I/II-like_Ag-recog.
IPR001039. MHC_I_a_a1/a2.
IPR010579. MHC_I_a_C.
[Graphical view]
PfamPF07654. C1-set. 1 hit.
PF00129. MHC_I. 1 hit.
PF06623. MHC_I_C. 1 hit.
[Graphical view]
PRINTSPR01638. MHCCLASSI.
SMARTSM00407. IGc1. 1 hit.
[Graphical view]
SUPFAMSSF54452. MHC_I/II-like_Ag-recog. 1 hit.
PROSITEPS50835. IG_LIKE. 1 hit.
PS00290. IG_MHC. 1 hit.
[Graphical view]
ProtoNetSearch...

Other

NextBio661080.

Entry information

Entry nameQ9JHM2_RAT
AccessionPrimary (citable) accession number: Q9JHM2
Entry history
Integrated into UniProtKB/TrEMBL: October 1, 2000
Last sequence update: October 1, 2000
Last modified: May 29, 2013
This is version 97 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info