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Q9J7Z2 (RDRP_PAV) Reviewed, UniProtKB/Swiss-Prot

Last modified April 16, 2014. Version 49. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (1) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
RNA-directed RNA polymerase

Short name=RdRp
EC=2.7.7.48
Alternative name(s):
RNA replicase
Short name=Protein A
OrganismPariacoto virus (PaV)
Taxonomic identifier103782 [NCBI]
Taxonomic lineageVirusesssRNA positive-strand viruses, no DNA stageNodaviridaeAlphanodavirus
Virus hostSpodoptera eridania (Southern armyworm) [TaxID: 37547]

Protein attributes

Sequence length973 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

RNA-dependent RNA polymerase which replicates the viral genome composed of 2 RNA segments, RNA1 AND RNA2 Potential.

Catalytic activity

Nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1).

Sequence similarities

Belongs to the nodaviridae RNA polymerase family.

Contains 1 RdRp catalytic domain.

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 973973RNA-directed RNA polymerase
PRO_0000222449

Regions

Domain558 – 683126RdRp catalytic
Compositional bias962 – 9665Poly-Thr

Sequences

Sequence LengthMass (Da)Tools
Q9J7Z2 [UniParc].

Last modified October 1, 2000. Version 1.
Checksum: C08835451D46EA1E

FASTA973108,099
        10         20         30         40         50         60 
MEEHIPLPSQ YESPKALPPR VPSSRWLRSL RPRLANSCLA LKIRAHESLV KIRLCKPYDA 

        70         80         90        100        110        120 
QSRSKIIEKV IERRETRKTL AHQLKDLKLV PVARDHTHGR AAKFRTSANI WMNEAMRAAG 

       130        140        150        160        170        180 
YEPYNVSMSN HDIERGNRYF YFAKDLTIPY RNDPVSDNTG FVFCDVDYYA DMEKWMQHFK 

       190        200        210        220        230        240 
PMLLYTLVPE SLSYHCDDHS FHVNDDRVFF DVRGGASYSH QLWDYTGDTI CVRGKNKELL 

       250        260        270        280        290        300 
VFTIEQKCIQ GDPHRRIIFL EPAARVAWPF YKPMKVEVGL KRKCMTAGQV NVLYEPIDDK 

       310        320        330        340        350        360 
ISLSASGSRH TVETTGRTLA AITARMKNKT SPPMVADVER ILRDAGDKEA CVNAPILFEL 

       370        380        390        400        410        420 
IPEAKFRVNV VKTTATPTHF QPLGPLRTED GETCGHAVTT TLATAPALLP MRGVNSDVAT 

       430        440        450        460        470        480 
VNGRVKKPAN TVIPFKEYKE YASEFVEFLV PEPGVGHPWD TAAVREVQDN RQQKARINMV 

       490        500        510        520        530        540 
AATVSTHSSN RLKAFIKAEA YAATNDPRNI TTMAPELTLM MSCFTYAFKE KILYEQPWYG 

       550        560        570        580        590        600 
PGKTPKQVGR RLQSIAKHGT LESDYSRFDG SISEWLQKNV VKAAYMRFFK EHQRTEFQSW 

       610        620        630        640        650        660 
FSKVFMQMGT TTAGVRYEAG WGTRSGSPIT TDGNTMLNAF VVYCCYRKLC HTPAEAWRKL 

       670        680        690        700        710        720 
SQGALLTGDD AVLAHENGLE PALLDVVKNL GLKVEAKVNG PDDPVSFCGR IYPRLSDCIT 

       730        740        750        760        770        780 
SFQDPLRTIP KLHLTTNKGV SPEQAAANRA HGYLATDKAT PIIGTWARRV IELTGDLKVK 

       790        800        810        820        830        840 
GATREEQYKL SNAHQQLDPS LIETAMANIL GIDVGELKAL DKAVSEAKAL DQMPVVLGNC 

       850        860        870        880        890        900 
YKHKIEAVVG GEVVGPGPRV ETVEPNHEQS SGTPEVVPEM AGHSERRDKS SNPRPGGKAE 

       910        920        930        940        950        960 
GLSSKAGKPR VPTRPAADRK AAAGSGNRRG PTNGRRPIRD RAPRGGGRPN PGTTPPVSNS 

       970 
ETTTTTAVVH ASA 

« Hide

References

[1]"Characterization and construction of functional cDNA clones of Pariacoto virus, the first Alphanodavirus isolated outside Australasia."
Johnson K.N., Zeddam J.-L., Ball L.A.
J. Virol. 74:5123-5132(2000) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [GENOMIC RNA].

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AF171942 Genomic RNA. Translation: AAF71691.1.
RefSeqNP_620109.1. NC_003691.1.

3D structure databases

ProteinModelPortalQ9J7Z2.
ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID956347.

Family and domain databases

InterProIPR001205. RNA-dir_pol_C.
IPR007094. RNA-dir_pol_PSvirus.
[Graphical view]
PfamPF00680. RdRP_1. 1 hit.
[Graphical view]
PROSITEPS50507. RDRP_SSRNA_POS. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameRDRP_PAV
AccessionPrimary (citable) accession number: Q9J7Z2
Entry history
Integrated into UniProtKB/Swiss-Prot: April 16, 2002
Last sequence update: October 1, 2000
Last modified: April 16, 2014
This is version 49 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programViral Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families