Skip Header

You are using a version of Internet Explorer that may not display all features of this website. Please upgrade to a modern browser.
Contribute Send feedback
Read comments (?) or add your own

Q9J5U7 (RDRP_CARMS) Reviewed, UniProtKB/Swiss-Prot

Last modified April 16, 2014. Version 49. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (1) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
Probable RNA-directed RNA polymerase

EC=2.7.7.48
Alternative name(s):
Protein p88

Cleaved into the following chain:

  1. Protein p28
Gene names
ORF Names:ORF1
OrganismCarnation mottle virus (isolate China/Shanghai) (CarMV) [Reference proteome]
Taxonomic identifier652111 [NCBI]
Taxonomic lineageVirusesssRNA positive-strand viruses, no DNA stageTombusviridaeCarmovirus
Virus hostDianthus barbatus [TaxID: 278075]
Dianthus caryophyllus (Carnation) (Clove pink) [TaxID: 3570]
Dianthus chinensis [TaxID: 118431]
Dianthus superbus [TaxID: 288950]
Saponaria officinalis (Common soapwort) (Lychnis saponaria) [TaxID: 3572]

Protein attributes

Sequence length763 AA.
Sequence statusComplete.
Sequence processingThe displayed sequence is further processed into a mature form.
Protein existencePredicted

General annotation (Comments)

Function

RNA-dependent RNA polymerase that plays an essential role in the virus replication Probable.

Catalytic activity

Nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1).

Miscellaneous

Readthrough of the terminator UAG occurs at position 246.

Sequence similarities

Contains 1 RdRp catalytic domain.

Sequence caution

The sequence AAF15527.1 differs from that shown. Reason: Erroneous gene model prediction.

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 763763Probable RNA-directed RNA polymerase
PRO_0000398302
Chain1 – 245245Protein p28
PRO_0000398303

Regions

Domain467 – 580114RdRp catalytic

Sequences

Sequence LengthMass (Da)Tools
Q9J5U7 [UniParc].

Last modified October 1, 2000. Version 1.
Checksum: ECDBAC527714F3D1

FASTA76385,965
        10         20         30         40         50         60 
MGLPSLLVEG VIGCTLVGGL VAVGSAALAV RATIGVVEFN RECVRGARRI VSSGGRCLIV 

        70         80         90        100        110        120 
QSPYGNPNQG LIRGEDEEID NVEESTPEEL TQLIEVKAEV DGKEVVVSKK RVVNRHLRQR 

       130        140        150        160        170        180 
FVRSIAIEAK NHFGGDISPS KANYLSVSKF LTGKCKERHV VPAHTRDCVS AAMVLVFTPD 

       190        200        210        220        230        240 
VHEIRMMAGL ASDAAYARKI AMASILNRKG WCWRLMVNPL DRARWWEMWC VVNGFDSNKP 

       250        260        270        280        290        300 
VTFPKXGGLF YLNGVETKIR RGGHPSVIEV DGQCPPRERK LYVQNAITTG YEYRVHNHSY 

       310        320        330        340        350        360 
ANLRRGLLER VFYVERNKEL VSCPQPEPGS FKEMGYLRRR FHRVCGNHTR ISANDLVDCY 

       370        380        390        400        410        420 
QGRKRTIYEN AAASLLDRAI ERKDGDLKTF IKAEKFNVNL KSDPAPRVIQ PRSPRYNVEL 

       430        440        450        460        470        480 
GRYLKKYEHH AYKALDKIWG GPTVMKGYTT EEVAQHIWSA WNQFQTPVAI GFDMSRFDQH 

       490        500        510        520        530        540 
VSVAALEFEH SCYLACFEGD AHLANLLKMQ LVNHGVGFAS NGMLRYTKEG CRMIGDMNTA 

       550        560        570        580        590        600 
LGNCLLACLI TKHLMKIRSR LINNGDDCVL ICERTDIDYV VSNLTTGWSR FGFNCIAEEP 

       610        620        630        640        650        660 
VYEMEKIRFC QMAPVFDGAG WLMVRDPLVS MSKDSHSLVH WNNETNAKQW LKSVGMCGLR 

       670        680        690        700        710        720 
IAGGVPIVQE FYQKYVETAG NVKENKNITE KSSSGFFMMA DRAKRGYSAV SEMCRFSFYQ 

       730        740        750        760 
AFGITPDQQI ALEGEIRSLT IDTNVGPQCE AADSLWILNR KYQ 

« Hide

References

[1]"Infectivity of full-length cDNA of carnation mottle virus."
Zhang A.P., Yue Y., Ye R., Zhu H.Q., Xu L., Yu S.Q.
Submitted (OCT-1999) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [GENOMIC RNA].

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AF192772 Genomic RNA. Translation: AAF15524.1.
AF192772 Genomic RNA. Translation: AAF15525.1.
AF192772 Genomic RNA. Translation: AAF15527.1. Sequence problems.
RefSeqNP_051882.1. NC_001265.1.
NP_051883.1. NC_001265.1.
NP_051884.1. NC_001265.1.

3D structure databases

ProteinModelPortalQ9J5U7.
ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID1724753.
1724754.
1724755.

Family and domain databases

InterProIPR007094. RNA-dir_pol_PSvirus.
IPR002166. RNA_pol_HCV.
[Graphical view]
PfamPF00998. RdRP_3. 1 hit.
[Graphical view]
PROSITEPS50507. RDRP_SSRNA_POS. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameRDRP_CARMS
AccessionPrimary (citable) accession number: Q9J5U7
Secondary accession number(s): Q9J5U6, Q9Q6X8
Entry history
Integrated into UniProtKB/Swiss-Prot: October 5, 2010
Last sequence update: October 1, 2000
Last modified: April 16, 2014
This is version 49 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programViral Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families