Q9IB73 (Q9IB73_PAROL) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Vitamin D receptor a EMBL BAA95016.1

Gene names

Name:

VDRa EMBL BAA95016.1

Organism

Paralichthys olivaceus (Bastard halibut) (Hippoglossus olivaceus) EMBL BAA95016.1

Taxonomic identifier

8255 [NCBI]

Taxonomic lineage

cellular organisms › Eukaryota › Opisthokonta › Metazoa › Eumetazoa › Bilateria › Deuterostomia › Chordata › Craniata › Vertebrata › Gnathostomata › Teleostomi › Euteleostomi › Actinopterygii › Actinopteri › Neopterygii › Teleostei › Elopocephala › Clupeocephala › Euteleostei › Neognathi › Neoteleostei › Eurypterygii › Ctenosquamata › Acanthomorpha › Euacanthomorpha › Holacanthopterygii › Acanthopterygii › Euacanthopterygii › Percomorpha › Pleuronectiformes › Pleuronectoidei › Paralichthyidae › Paralichthys

Protein attributes

Sequence length	420 AA.
Sequence status	Complete.
Protein existence	Evidence at transcript level

General annotation (Comments)

Sequence similarities

Belongs to the nuclear hormone receptor family. RuleBase RU000377 Contains 1 nuclear receptor DNA-binding domain. SAAS SAAS000536

Ontologies

Keywords
Biological process	Transcription Transcription regulation RuleBase RU004334 SAAS SAAS000536
Cellular component	Nucleus RuleBase RU004334 SAAS SAAS000536
Domain	Zinc-finger RuleBase RU004334 SAAS SAAS000536
Ligand	DNA-binding RuleBase RU004334 SAAS SAAS000536 Metal-binding Zinc
Molecular function	Receptor RuleBase RU004334 EMBL BAA95016.1
Gene Ontology (GO)
Biological_process	vitamin D receptor signaling pathway Inferred from electronic annotation. Source: GOC
Cellular_component	nucleus Inferred from electronic annotation. Source: UniProtKB-KW
Molecular_function	sequence-specific DNA binding Inferred from electronic annotation. Source: InterPro steroid hormone receptor activity Inferred from electronic annotation. Source: InterPro vitamin D3 receptor activity Inferred from electronic annotation. Source: InterPro zinc ion binding Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	Q9IB73 [UniParc]. Last modified October 1, 2000. Version 1. Checksum: 038FBF00D4F38067	FASTA	420	47,486
	10 20 30 40 50 60 MEPMTVTTSM VGPDEFDRNA PRICGVCGDK ATGFHFNAMT CEGCKGFFRR SMKRKASFTC 70 80 90 100 110 120 PFNGSCTITK DNRRHCQACR LKRCIDIGMM KEFILTDEEV QREKEMILKR KEEEAAREAM 130 140 150 160 170 180 RPRLNEEQAR MISSLVEAHH KTYDASYSDF SRFRPPVREG PVTRSASRAA SLHSLSDASS 190 200 210 220 230 240 DSFNHSPESV DTKMNFSNLL MMYQDGASSP DSSEENTKLS MLPHLADLVS YSIQKVIGFA 250 260 270 280 290 300 KMIPGFRDLT AEDQIALLKS SAIEIIMLRS NQSFSLEDMS WSCGGPDFKY CINDVTKAGH 310 320 330 340 350 360 TLELLEPLVK FQVGLKKLNL HEEEHVLLMG ICLLSPDRPG VQDHARVEQL QDRLPEALQA 370 380 390 400 410 420 YIRINHPGGR LLYAKMIQKL ADLRSLNEEH SKQYRSLSFQ PEHSMQLTPL VLEVFGSEVS

References

[1]

"Identification of cDNAs encoding two subtypes of vitamin D receptor in flounder, Paralichthys olivaceus." Suzuki T., Suzuki N., Srivastava A.S., Kurokawa T. Biochem. Biophys. Res. Commun. 270:40-45(2000) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE. Tissue: Intestine EMBL BAA95016.1.

Cross-references

Sequence databases
EMBL GenBank DDBJ	AB037674 mRNA. Translation: BAA95016.1.
PIR	JC7229.
3D structure databases
HSSP	HSSP built from PDB template 1KB6 based on UniProtKB P11473.
ProteinModelPortal	Q9IB73.
SMR	Q9IB73. Positions 21-121, 124-419.
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Phylogenomic databases
HOVERGEN	HBG108655.
Family and domain databases
Gene3D	1.10.565.10. 2 hits. 3.30.50.10. 1 hit.
InterPro	IPR008946. Nucl_hormone_rcpt_ligand-bd. IPR000536. Nucl_hrmn_rcpt_lig-bd_core. IPR001723. Str_hrmn_rcpt. IPR000324. VitD_rcpt. IPR001628. Znf_hrmn_rcpt. IPR013088. Znf_NHR/GATA. [Graphical view]
Pfam	PF00104. Hormone_recep. 1 hit. PF00105. zf-C4. 1 hit. [Graphical view]
PRINTS	PR00398. STRDHORMONER. PR00047. STROIDFINGER. PR00350. VITAMINDR.
SMART	SM00430. HOLI. 1 hit. SM00399. ZnF_C4. 1 hit. [Graphical view]
SUPFAM	SSF48508. Str_ncl_receptor. 1 hit.
PROSITE	PS00031. NUCLEAR_REC_DBD_1. 1 hit. PS51030. NUCLEAR_REC_DBD_2. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

Q9IB73_PAROL

Accession

Primary (citable) accession number: Q9IB73

Entry history

Integrated into UniProtKB/TrEMBL:	October 1, 2000
Last sequence update:	October 1, 2000
Last modified:	April 3, 2013
This is version 65 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)