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Q9I9E8 (Q9I9E8_DANRE) Unreviewed, UniProtKB/TrEMBL

Last modified June 11, 2014. Version 113. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names

GA-binding protein transcription factor, alpha subunit EMBL AAH66501.1

Gabpa protein EMBL AAH55494.1

Uncharacterized protein Ensembl ENSDARP00000091473 Ensembl ENSDARP00000091474
Gene names
Name:gabpa ZFIN ZDB-GENE-011010-2 Ensembl ENSDARP00000091473 Ensembl ENSDARP00000091474 EMBL AAH55494.1
Synonyms:e4tf ZFIN ZDB-GENE-000616-12 EMBL AAF71747.1
OrganismDanio rerio (Zebrafish) (Brachydanio rerio) [Reference proteome]
Taxonomic identifier7955 [NCBI]
Taxonomic lineageEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiActinopterygiiNeopterygiiTeleosteiOstariophysiCypriniformesCyprinidaeDanio

Protein attributes

Sequence length455 AA.
Sequence statusComplete.
Protein existenceEvidence at transcript level

General annotation (Comments)

Sequence similarities

Belongs to the ETS family. RuleBase RU004019

Contains 1 ETS DNA-binding domain. RuleBase RU004019

Sequences

Sequence LengthMass (Da)Tools
Q9I9E8 [UniParc].

Last modified October 1, 2000. Version 1.
Checksum: DC23A5927F566E7F

FASTA45551,045
        10         20         30         40         50         60 
MSKSETEEMI EIEIDGREKQ ECLEEGIEEQ TITAAELITQ DIDINEPIGN LKKLLEPRLQ 

        70         80         90        100        110        120 
IPLDGYDICL QDIQLHPDHS LFDQGVKTDG TVQLSVQIVT KPGEEKLNIL EIVKPVETVE 

       130        140        150        160        170        180 
VVIDPDAAAG EEAHLVEDGQ VIAVERAALP DETSEQVTRW AAALEGYRKE QVRLNIPYDP 

       190        200        210        220        230        240 
VQWTADQVIH WAVWVMKEFG IDEMEVGGIH IPGRQLCGFS QEEFLQRVPS GEILWSHLEL 

       250        260        270        280        290        300 
LRKYVLASQD QSQEATVTID QPVQIIPAPV QQATPTAIKV MKHNKTPRAP RISGEERSSP 

       310        320        330        340        350        360 
GNRTGNNGQI QLWQFLLELL TDKDSRDCIS WVGEEGEFKL NQPELVAQKW GQRKNKPTMN 

       370        380        390        400        410        420 
YEKLSRALRY YYDGDMISKV QGKRFVYKFV CDLRTLIGYS AAELNNLVTE CEQKKLARVQ 

       430        440        450 
LQGLGQPVNT VTLATATGQP VTTVTLAAAA LDKDS 

« Hide

References

« Hide 'large scale' references
[1]"An e4tf cDNA from Zebrafish (Danio rerio)."
Slavov D.B., Gardiner K.
Submitted (APR-2000) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
[2]NIH - Zebrafish Gene Collection (ZGC) project
Submitted (AUG-2003) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
Tissue: Whole body EMBL AAH55494.1.
[3]NIH - Zebrafish Gene Collection (ZGC) project
Submitted (FEB-2004) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
Tissue: Kidney EMBL AAH66501.1.
[4]NIH - Zebrafish Gene Collection (ZGC) project
Submitted (APR-2008) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
Tissue: PCR rescue EMBL AAI65340.1.
[5]Ensembl
Submitted (FEB-2012) to UniProtKB
Cited for: IDENTIFICATION.
Strain: Tuebingen Ensembl ENSDARP00000091473 Ensembl ENSDARP00000091474.
[6]"The zebrafish reference genome sequence and its relationship to the human genome."
Howe K., Clark M.D., Torroja C.F., Torrance J., Berthelot C., Muffato M., Collins J.E., Humphray S., McLaren K., Matthews L., McLaren S., Sealy I., Caccamo M., Churcher C., Scott C., Barrett J.C., Koch R., Rauch G.J. expand/collapse author list , White S., Chow W., Kilian B., Quintais L.T., Guerra-Assuncao J.A., Zhou Y., Gu Y., Yen J., Vogel J.H., Eyre T., Redmond S., Banerjee R., Chi J., Fu B., Langley E., Maguire S.F., Laird G.K., Lloyd D., Kenyon E., Donaldson S., Sehra H., Almeida-King J., Loveland J., Trevanion S., Jones M., Quail M., Willey D., Hunt A., Burton J., Sims S., McLay K., Plumb B., Davis J., Clee C., Oliver K., Clark R., Riddle C., Eliott D., Threadgold G., Harden G., Ware D., Mortimer B., Kerry G., Heath P., Phillimore B., Tracey A., Corby N., Dunn M., Johnson C., Wood J., Clark S., Pelan S., Griffiths G., Smith M., Glithero R., Howden P., Barker N., Stevens C., Harley J., Holt K., Panagiotidis G., Lovell J., Beasley H., Henderson C., Gordon D., Auger K., Wright D., Collins J., Raisen C., Dyer L., Leung K., Robertson L., Ambridge K., Leongamornlert D., McGuire S., Gilderthorp R., Griffiths C., Manthravadi D., Nichol S., Barker G., Whitehead S., Kay M., Brown J., Murnane C., Gray E., Humphries M., Sycamore N., Barker D., Saunders D., Wallis J., Babbage A., Hammond S., Mashreghi-Mohammadi M., Barr L., Martin S., Wray P., Ellington A., Matthews N., Ellwood M., Woodmansey R., Clark G., Cooper J., Tromans A., Grafham D., Skuce C., Pandian R., Andrews R., Harrison E., Kimberley A., Garnett J., Fosker N., Hall R., Garner P., Kelly D., Bird C., Palmer S., Gehring I., Berger A., Dooley C.M., Ersan-Urun Z., Eser C., Geiger H., Geisler M., Karotki L., Kirn A., Konantz J., Konantz M., Oberlander M., Rudolph-Geiger S., Teucke M., Osoegawa K., Zhu B., Rapp A., Widaa S., Langford C., Yang F., Carter N.P., Harrow J., Ning Z., Herrero J., Searle S.M., Enright A., Geisler R., Plasterk R.H., Lee C., Westerfield M., de Jong P.J., Zon L.I., Postlethwait J.H., Nusslein-Volhard C., Hubbard T.J., Roest Crollius H., Rogers J., Stemple D.L.
Nature 496:498-503(2013) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: Tuebingen Ensembl ENSDARP00000091473 Ensembl ENSDARP00000091474.
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CR759841 Genomic DNA. No translation available.
AF257741 mRNA. Translation: AAF71747.1.
BC055494 mRNA. Translation: AAH55494.1.
BC066501 mRNA. Translation: AAH66501.1.
BC165340 mRNA. Translation: AAI65340.1.
RefSeqNP_571662.1. NM_131587.1.
XP_005167909.1. XM_005167852.1.
XP_005167910.1. XM_005167853.1.
UniGeneDr.77675.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblENSDART00000100700; ENSDARP00000091473; ENSDARG00000069289.
ENSDART00000100701; ENSDARP00000091474; ENSDARG00000069289.
GeneID58110.
KEGGdre:58110.

Organism-specific databases

CTD2551.
ZFINZDB-GENE-011010-2. gabpa.

Phylogenomic databases

GeneTreeENSGT00750000117307.
HOGENOMHOG000285952.
HOVERGENHBG051687.
InParanoidQ9I9E8.
KOK09441.
OMAGIPYDPV.
TreeFamTF350537.

Family and domain databases

Gene3D1.10.10.10. 1 hit.
1.10.150.50. 1 hit.
InterProIPR000418. Ets_dom.
IPR024668. GABP_asu_N.
IPR003118. Pointed_dom.
IPR013761. SAM/pointed.
IPR016312. TF_GA-bd_asu.
IPR029071. Ubiquitin-rel_dom.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamPF00178. Ets. 1 hit.
PF11620. GABP-alpha. 1 hit.
PF02198. SAM_PNT. 1 hit.
[Graphical view]
PIRSFPIRSF001703. GABP_alpha. 1 hit.
PRINTSPR00454. ETSDOMAIN.
SMARTSM00413. ETS. 1 hit.
SM00251. SAM_PNT. 1 hit.
[Graphical view]
SUPFAMSSF47769. SSF47769. 1 hit.
SSF54236. SSF54236. 1 hit.
PROSITEPS00345. ETS_DOMAIN_1. 1 hit.
PS00346. ETS_DOMAIN_2. 1 hit.
PS50061. ETS_DOMAIN_3. 1 hit.
PS51433. PNT. 1 hit.
[Graphical view]
ProtoNetSearch...

Other

NextBio20892362.
PROQ9I9E8.

Entry information

Entry nameQ9I9E8_DANRE
AccessionPrimary (citable) accession number: Q9I9E8
Entry history
Integrated into UniProtKB/TrEMBL: October 1, 2000
Last sequence update: October 1, 2000
Last modified: June 11, 2014
This is version 113 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)