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Protein

Glycine--tRNA ligase beta subunit

Gene

glyS

Organism
Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Catalytic activityi

ATP + glycine + tRNA(Gly) = AMP + diphosphate + glycyl-tRNA(Gly).UniRule annotation

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionAminoacyl-tRNA synthetase, Ligase
Biological processProtein biosynthesis
LigandATP-binding, Nucleotide-binding

Names & Taxonomyi

Protein namesi
Recommended name:
Glycine--tRNA ligase beta subunitUniRule annotation (EC:6.1.1.14UniRule annotation)
Alternative name(s):
Glycyl-tRNA synthetase beta subunitUniRule annotation
Short name:
GlyRSUniRule annotation
Gene namesi
Name:glySUniRule annotation
Ordered Locus Names:PA0008
OrganismiPseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Taxonomic identifieri208964 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaPseudomonadalesPseudomonadaceaePseudomonas
Proteomesi
  • UP000002438 Componenti: Chromosome

Organism-specific databases

PseudoCAPiPA0008.

Subcellular locationi

  • Cytoplasm UniRule annotation

GO - Cellular componenti

Keywords - Cellular componenti

Cytoplasm

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00000729181 – 684Glycine--tRNA ligase beta subunitAdd BLAST684

Proteomic databases

PaxDbiQ9I7B8.
PRIDEiQ9I7B8.

Interactioni

Subunit structurei

Tetramer of two alpha and two beta subunits.UniRule annotation

Protein-protein interaction databases

STRINGi208964.PA0008.

Structurei

3D structure databases

ProteinModelPortaliQ9I7B8.
SMRiQ9I7B8.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the class-II aminoacyl-tRNA synthetase family.UniRule annotation

Phylogenomic databases

eggNOGiENOG4105C38. Bacteria.
COG0751. LUCA.
InParanoidiQ9I7B8.
KOiK01879.
OMAiKENQRYF.
PhylomeDBiQ9I7B8.

Family and domain databases

Gene3Di1.10.730.10. 1 hit.
HAMAPiMF_00255. Gly_tRNA_synth_beta. 1 hit.
InterProiView protein in InterPro
IPR008909. DALR_anticod-bd.
IPR015944. Gly-tRNA-synth_bsu.
IPR006194. Gly-tRNA-synth_heterodimer.
IPR009080. tRNAsynth_Ia_anticodon-bd.
PANTHERiPTHR30075. PTHR30075. 1 hit.
PfamiView protein in Pfam
PF05746. DALR_1. 1 hit.
PF02092. tRNA_synt_2f. 1 hit.
PRINTSiPR01045. TRNASYNTHGB.
SMARTiView protein in SMART
SM00836. DALR_1. 1 hit.
TIGRFAMsiTIGR00211. glyS. 1 hit.
PROSITEiView protein in PROSITE
PS50861. AA_TRNA_LIGASE_II_GLYAB. 1 hit.

Sequencei

Sequence statusi: Complete.

Q9I7B8-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSAKDFLVEL GTEELPPKAL NSLGEAFLSG IEKGLKAAGL SYAAARFYAA
60 70 80 90 100
PRRLAVLVEQ LAVQQPDRTV NLDGPPLQAA FDASGNPTQA ALGFAKKCGV
110 120 130 140 150
DLQQIDKSGP KLRFIQTIAG QPAAGLLPGI VEASLNELPI PKRMRWAARR
160 170 180 190 200
EEFVRPTQWL VMLFGDDVVE CEILAQKAGR ESRGHRFHNP DNVRISSPAA
210 220 230 240 250
YLEDLRGAHV LADFAERREL IAKRVAELAA EQQGSAIVPP SLLDEVTALV
260 270 280 290 300
EWPVPLVCSF EERFLEVPQE ALITTMQDNQ KYFCLLDANG KLLPRFITVA
310 320 330 340 350
NVESKAPENI VSGNEKVVRP RLTDAEFFFK QDKKQPLESF NERLRNVVFQ
360 370 380 390 400
AQLGTVFEKA QRVSGLAAYI AERIGGNAQN ASRAGILSKC DLATEMVGEF
410 420 430 440 450
PEMQGIAGYY YATHGGEAED VALALNEQYM PRGAGAELPS TLTGAAVAVA
460 470 480 490 500
DKLDTLVGIF GIGMLPTGSK DPYALRRAAL GVLRILIEKQ LDLDLVAAVN
510 520 530 540 550
AAVEQYGDKV KAAGLAEQVL DFVFDRLRAR YEDEGVDVAV YQSVRALKPS
560 570 580 590 600
SPLDFDQRVQ AVQAFRQLPE AEALAAANKR VSNILAKSED EVPPNVDASL
610 620 630 640 650
LVEAAEKALG SAVANAESEV APLAAARDYR AALARLAALR EPVDTFFADV
660 670 680
MVNVDDAAVR ANRYALLAKL RGSFLGVADI SLLG
Length:684
Mass (Da):73,974
Last modified:March 1, 2001 - v1
Checksum:i74144075010F0BE6
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE004091 Genomic DNA. Translation: AAG03398.1.
PIRiD83645.
RefSeqiNP_064728.1. NC_002516.2.
WP_003114646.1. NC_002516.2.

Genome annotation databases

EnsemblBacteriaiAAG03398; AAG03398; PA0008.
GeneIDi878214.
KEGGipae:PA0008.
PATRICifig|208964.12.peg.8.

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.

Entry informationi

Entry nameiSYGB_PSEAE
AccessioniPrimary (citable) accession number: Q9I7B8
Entry historyiIntegrated into UniProtKB/Swiss-Prot: November 8, 2002
Last sequence update: March 1, 2001
Last modified: July 5, 2017
This is version 100 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Aminoacyl-tRNA synthetases
    List of aminoacyl-tRNA synthetase entries
  2. SIMILARITY comments
    Index of protein domains and families