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Q9I469

- COBD_PSEAE

UniProt

Q9I469 - COBD_PSEAE

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Protein

Cobalamin biosynthesis protein CobD

Gene
cobD, PA1275
Organism
Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228)
Status
Reviewed - Annotation score: 2 out of 5 - Protein inferred from homologyi

Functioni

Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group By similarity.UniRule annotation

Pathwayi

GO - Molecular functioni

  1. cobalamin-transporting ATPase activity Source: UniProtKB-HAMAP
  2. threonine-phosphate decarboxylase activity Source: InterPro

GO - Biological processi

  1. cobalamin biosynthetic process Source: UniProtKB-UniPathway
  2. porphyrin-containing compound biosynthetic process Source: UniProtKB-KW
Complete GO annotation...

Keywords - Biological processi

Cobalamin biosynthesis, Porphyrin biosynthesis

Enzyme and pathway databases

UniPathwayiUPA00148.

Names & Taxonomyi

Protein namesi
Recommended name:
Cobalamin biosynthesis protein CobD
Gene namesi
Name:cobD
Ordered Locus Names:PA1275
OrganismiPseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228)
Taxonomic identifieri208964 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaPseudomonadalesPseudomonadaceaePseudomonas
ProteomesiUP000002438: Chromosome

Organism-specific databases

PseudoCAPiPA1275.

Subcellular locationi

Cell membrane; Multi-pass membrane protein Reviewed prediction UniRule annotation

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Transmembranei59 – 7921Helical; Reviewed predictionAdd
BLAST
Transmembranei81 – 10121Helical; Reviewed predictionAdd
BLAST
Transmembranei153 – 17321Helical; Reviewed predictionAdd
BLAST
Transmembranei241 – 26121Helical; Reviewed predictionAdd
BLAST
Transmembranei292 – 31221Helical; Reviewed predictionAdd
BLAST

GO - Cellular componenti

  1. integral component of membrane Source: UniProtKB-KW
  2. plasma membrane Source: UniProtKB-SubCell
Complete GO annotation...

Keywords - Cellular componenti

Cell membrane, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 312312Cobalamin biosynthesis protein CobDUniRule annotationPRO_0000287753Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi208964.PA1275.

Family & Domainsi

Sequence similaritiesi

Belongs to the CobD/CbiB family.

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiCOG1270.
HOGENOMiHOG000290070.
KOiK02227.
OMAiHRSPRYA.
OrthoDBiEOG6VXFC9.
PhylomeDBiQ9I469.

Family and domain databases

HAMAPiMF_00024. CobD_CbiB.
InterProiIPR004485. Cobalamin_biosynth_CobD/CbiB.
[Graphical view]
PfamiPF03186. CobD_Cbib. 1 hit.
[Graphical view]
TIGRFAMsiTIGR00380. cobD. 1 hit.

Sequencei

Sequence statusi: Complete.

Q9I469-1 [UniParc]FASTAAdd to Basket

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MSALLGILGV VLDARFGEPQ GWHPLVAFGR LADRLERRFN RSRLAGEADP    50
GVGWRSHGVT AWVLAVLPLT LLAWALAELP YLGWLVQALA LYAALGLRSL 100
GEHAEPVALA LRAGDLDEAR RRVGYLVSRD TRELDQAGVA RAATESVLEN 150
GSDAVYAALF WFAVAGAPGV VLYRLSNTLD AMWGYRNARF ERFGWAAAKI 200
DDILNYLPAR LVALTYALLG DTRQALRCWR EQAPQWDSPN AGPVMAAGAG 250
ALGVFLGGAA IYHGELHQRP LLGSGPQPQG RDIYRALALV RQGVLLWLLV 300
LAGLWAMGWL HA 312
Length:312
Mass (Da):33,873
Last modified:March 1, 2001 - v1
Checksum:iC74A880A7F474347
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AE004091 Genomic DNA. Translation: AAG04664.1.
PIRiA83486.
RefSeqiNP_249966.1. NC_002516.2.

Genome annotation databases

EnsemblBacteriaiAAG04664; AAG04664; PA1275.
GeneIDi881384.
KEGGipae:PA1275.
PATRICi19836878. VBIPseAer58763_1325.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AE004091 Genomic DNA. Translation: AAG04664.1 .
PIRi A83486.
RefSeqi NP_249966.1. NC_002516.2.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 208964.PA1275.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai AAG04664 ; AAG04664 ; PA1275 .
GeneIDi 881384.
KEGGi pae:PA1275.
PATRICi 19836878. VBIPseAer58763_1325.

Organism-specific databases

PseudoCAPi PA1275.

Phylogenomic databases

eggNOGi COG1270.
HOGENOMi HOG000290070.
KOi K02227.
OMAi HRSPRYA.
OrthoDBi EOG6VXFC9.
PhylomeDBi Q9I469.

Enzyme and pathway databases

UniPathwayi UPA00148 .

Family and domain databases

HAMAPi MF_00024. CobD_CbiB.
InterProi IPR004485. Cobalamin_biosynth_CobD/CbiB.
[Graphical view ]
Pfami PF03186. CobD_Cbib. 1 hit.
[Graphical view ]
TIGRFAMsi TIGR00380. cobD. 1 hit.
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228.

Entry informationi

Entry nameiCOBD_PSEAE
AccessioniPrimary (citable) accession number: Q9I469
Entry historyi
Integrated into UniProtKB/Swiss-Prot: May 15, 2007
Last sequence update: March 1, 2001
Last modified: July 9, 2014
This is version 73 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. PATHWAY comments
    Index of metabolic and biosynthesis pathways
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

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