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Protein
Submitted name:

Fucose-binding lectin PA-IIL

Gene

lecB

Organism
Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Metal bindingi22Calcium 1; via carbonyl oxygenCombined sources1
Binding sitei24N-acetyl-D-glucosamineCombined sources1
Metal bindingi96Calcium 2Combined sources1
Binding sitei97N-acetyl-D-glucosamineCombined sources1
Metal bindingi100Calcium 2Combined sources1
Binding sitei100GalactoseCombined sources1
Metal bindingi102Calcium 1Combined sources1
Metal bindingi102Calcium 2Combined sources1
Metal bindingi104Calcium 1Combined sources1
Metal bindingi105Calcium 1Combined sources1
Metal bindingi105Calcium 2Combined sources1
Metal bindingi115Calcium 1; via carbonyl oxygenCombined sources1
Metal bindingi115Calcium 2; via carbonyl oxygenCombined sources1
Binding sitei115Fucose; via amide nitrogen and carbonyl oxygenCombined sources1
Binding sitei115Mannose; via amide nitrogen and carbonyl oxygenCombined sources1

GO - Molecular functioni

  • carbohydrate binding Source: PseudoCAP
  • metal ion binding Source: UniProtKB-KW
Complete GO annotation...

Keywords - Ligandi

CalciumCombined sources, LectinImported, Metal-bindingCombined sources

Names & Taxonomyi

Protein namesi
Submitted name:
Fucose-binding lectin PA-IILImported
Gene namesi
Name:lecBImported
Ordered Locus Names:PA3361Imported
OrganismiPseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)Imported
Taxonomic identifieri208964 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaPseudomonadalesPseudomonadaceaePseudomonas
Proteomesi
  • UP000002438 Componenti: Chromosome

Organism-specific databases

PseudoCAPiPA3361.

PTM / Processingi

Proteomic databases

PaxDbiQ9HYN5.

Interactioni

Protein-protein interaction databases

STRINGi208964.PA3361.

Chemistry databases

BindingDBiQ9HYN5.

Structurei

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1GZTX-ray1.30A/B/C/D1-115[»]
1OURX-ray1.42A2-115[»]
1OUSX-ray1.20A/B/C/D2-115[»]
1OUXX-ray2.00A/B/C/D2-115[»]
1OVPX-ray1.40A2-115[»]
1OVSX-ray1.75A/B/C/D2-115[»]
1OXCX-ray1.20A/B/C/D2-115[»]
1UZVX-ray1.00A/B/C/D2-115[»]
1W8FX-ray1.05A/B/C/D1-115[»]
1W8HX-ray1.75A/B/C/D1-115[»]
2BOJX-ray1.80A/B/C/D2-115[»]
2BP6X-ray1.50A/B/C/D2-115[»]
2JDHX-ray1.10A/B/C/D1-115[»]
2JDKX-ray1.10A/B/C/D1-115[»]
2JDMX-ray1.70A/B/C/D1-115[»]
2JDNX-ray1.30A/B/C/D1-115[»]
2JDPX-ray1.30A/B/C/D1-115[»]
2JDUX-ray1.50A/B/C/D1-115[»]
2JDYX-ray1.70A/B/C/D1-115[»]
2VUCX-ray1.30A/B/C/D2-115[»]
2VUDX-ray1.70A/B/C/D2-115[»]
3DCQX-ray1.80A/B/C/D2-115[»]
3ZDVX-ray1.41A/B/C/D1-115[»]
4CE8X-ray0.90A/B/C/D2-115[»]
5A3OX-ray1.60A/B/C/D2-115[»]
5D2AX-ray2.13A/B2-115[»]
5HCHX-ray2.90A2-115[»]
ProteinModelPortaliQ9HYN5.
SMRiQ9HYN5.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ9HYN5.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini7 – 114PA-IILInterPro annotationAdd BLAST108

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Regioni22 – 24Fucose bindingCombined sources3
Regioni22 – 24Mannose bindingCombined sources3
Regioni97 – 105Fucose bindingCombined sources9
Regioni97 – 105Mannose bindingCombined sources9

Phylogenomic databases

eggNOGiENOG4105UE0. Bacteria.
ENOG41120NN. LUCA.
HOGENOMiHOG000110720.
KOiK20277.
OMAiNDYNDGI.

Family and domain databases

Gene3Di2.60.120.400. 1 hit.
InterProiIPR010907. Ca-mediated_lectin.
IPR016927. Lectin_sugar-bd.
[Graphical view]
PfamiPF07472. PA-IIL. 1 hit.
[Graphical view]
PIRSFiPIRSF029595. Lectin_LecB. 1 hit.
SUPFAMiSSF82026. SSF82026. 1 hit.

Sequencei

Sequence statusi: Complete.

Q9HYN5-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MATQGVFTLP ANTRFGVTAF ANSSGTQTVN VLVNNETAAT FSGQSTNNAV
60 70 80 90 100
IGTQVLNSGS SGKVQVQVSV NGRPSDLVSA QVILTNELNF ALVGSEDGTD
110
NDYNDAVVVI NWPLG
Length:115
Mass (Da):11,863
Last modified:March 1, 2001 - v1
Checksum:i616D8249512CDD7D
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE004091 Genomic DNA. Translation: AAG06749.1.
PIRiH83225.
RefSeqiNP_252051.1. NC_002516.2.
WP_003098728.1. NZ_ASJY01000541.1.

Genome annotation databases

EnsemblBacteriaiAAG06749; AAG06749; PA3361.
GeneIDi882528.
KEGGipae:PA3361.
PATRICi19841323. VBIPseAer58763_3520.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE004091 Genomic DNA. Translation: AAG06749.1.
PIRiH83225.
RefSeqiNP_252051.1. NC_002516.2.
WP_003098728.1. NZ_ASJY01000541.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1GZTX-ray1.30A/B/C/D1-115[»]
1OURX-ray1.42A2-115[»]
1OUSX-ray1.20A/B/C/D2-115[»]
1OUXX-ray2.00A/B/C/D2-115[»]
1OVPX-ray1.40A2-115[»]
1OVSX-ray1.75A/B/C/D2-115[»]
1OXCX-ray1.20A/B/C/D2-115[»]
1UZVX-ray1.00A/B/C/D2-115[»]
1W8FX-ray1.05A/B/C/D1-115[»]
1W8HX-ray1.75A/B/C/D1-115[»]
2BOJX-ray1.80A/B/C/D2-115[»]
2BP6X-ray1.50A/B/C/D2-115[»]
2JDHX-ray1.10A/B/C/D1-115[»]
2JDKX-ray1.10A/B/C/D1-115[»]
2JDMX-ray1.70A/B/C/D1-115[»]
2JDNX-ray1.30A/B/C/D1-115[»]
2JDPX-ray1.30A/B/C/D1-115[»]
2JDUX-ray1.50A/B/C/D1-115[»]
2JDYX-ray1.70A/B/C/D1-115[»]
2VUCX-ray1.30A/B/C/D2-115[»]
2VUDX-ray1.70A/B/C/D2-115[»]
3DCQX-ray1.80A/B/C/D2-115[»]
3ZDVX-ray1.41A/B/C/D1-115[»]
4CE8X-ray0.90A/B/C/D2-115[»]
5A3OX-ray1.60A/B/C/D2-115[»]
5D2AX-ray2.13A/B2-115[»]
5HCHX-ray2.90A2-115[»]
ProteinModelPortaliQ9HYN5.
SMRiQ9HYN5.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi208964.PA3361.

Chemistry databases

BindingDBiQ9HYN5.

Proteomic databases

PaxDbiQ9HYN5.

Protocols and materials databases

DNASUi882528.
Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAG06749; AAG06749; PA3361.
GeneIDi882528.
KEGGipae:PA3361.
PATRICi19841323. VBIPseAer58763_3520.

Organism-specific databases

PseudoCAPiPA3361.

Phylogenomic databases

eggNOGiENOG4105UE0. Bacteria.
ENOG41120NN. LUCA.
HOGENOMiHOG000110720.
KOiK20277.
OMAiNDYNDGI.

Miscellaneous databases

EvolutionaryTraceiQ9HYN5.

Family and domain databases

Gene3Di2.60.120.400. 1 hit.
InterProiIPR010907. Ca-mediated_lectin.
IPR016927. Lectin_sugar-bd.
[Graphical view]
PfamiPF07472. PA-IIL. 1 hit.
[Graphical view]
PIRSFiPIRSF029595. Lectin_LecB. 1 hit.
SUPFAMiSSF82026. SSF82026. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiQ9HYN5_PSEAE
AccessioniPrimary (citable) accession number: Q9HYN5
Entry historyi
Integrated into UniProtKB/TrEMBL: March 1, 2001
Last sequence update: March 1, 2001
Last modified: November 2, 2016
This is version 102 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

3D-structureCombined sources, Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.