Q9HXQ0 (RIMM_PSEAE) Reviewed, UniProtKB/Swiss-Prot

Names and origin

Protein names

Recommended name:
Ribosome maturation factor rimM

Gene names

Name:	rimM
Ordered Locus Names:	PA3744

Organism

Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228)

Taxonomic identifier

208964 [NCBI]

Taxonomic lineage

Bacteria › Proteobacteria › Gammaproteobacteria › Pseudomonadales › Pseudomonadaceae › Pseudomonas

Protein attributes

Sequence length	175 AA.
Sequence status	Complete.
Protein existence	Evidence at protein level

General annotation (Comments)

Function	An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after rbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes By similarity. HAMAP MF_00014
Subunit structure	Binds ribosomal protein S19 By similarity. HAMAP MF_00014
Subcellular location	Cytoplasm By similarity HAMAP MF_00014.
Domain	The PRC barrel domain binds ribosomal protein S19 By similarity. HAMAP MF_00014
Sequence similarities	Belongs to the rimM family. Contains 1 PRC barrel domain.

Ontologies

Keywords
Biological process	Ribosome biogenesis
Cellular component	Cytoplasm
Molecular function	Chaperone
Technical term	3D-structure Complete proteome Reference proteome
Gene Ontology (GO)
Biological process	rRNA processing Inferred from electronic annotation. Source: InterPro
Cellular component	ribosome Inferred from electronic annotation. Source: InterPro
Molecular function	ribosome binding Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequence annotation (Features)

Feature key

Position(s)

Length

Description

Graphical view

Feature identifier

Molecule processing

Chain

1 – 175

175

Ribosome maturation factor rimM HAMAP MF_00014

PRO_0000163335

Regions

Domain

98 – 175

78

PRC barrel

Secondary structure

1

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

175

Helix Strand Turn

Details...

Beta strand

8 – 18

11

Turn

19 – 22

4

Beta strand

23 – 28

6

Beta strand

30 – 32

3

Helix

33 – 38

6

Beta strand

41 – 46

6

Beta strand

49 – 61

13

Beta strand

64 – 69

6

Helix

75 – 79

5

Turn

80 – 83

4

Beta strand

85 – 89

5

Helix

90 – 92

3

Helix

103 – 106

4

Beta strand

110 – 113

4

Beta strand

118 – 126

9

Beta strand

129 – 131

3

Beta strand

133 – 137

5

Beta strand

142 – 145

4

Beta strand

148 – 151

4

Turn

154 – 156

3

Beta strand

157 – 161

5

Turn

162 – 165

4

Beta strand

166 – 169

4

Sequences

	Sequence		Length	Mass (Da)
	Q9HXQ0 [UniParc]. Last modified March 1, 2001. Version 1. Checksum: AC5B599D9282D414	FASTA	175	19,790
	10 20 30 40 50 60 MPTPADDLVV IGKIVSVYGI RGEVKVYSFT DPLDNLLDYR RWTLRRDGEI RQAELVRGRL 70 80 90 100 110 120 HGKVLAAKLK GLDDREEART FTGYEICIPR SELPSLEEGE YYWHQLEGLK VIDQGRQLLG 130 140 150 160 170 VIDHLLETGA NDVMVVKPCA GSLDDRERLL PYTGQCVLSI DLAAGEMRVD WDADF

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"Complete genome sequence of Pseudomonas aeruginosa PAO1, an opportunistic pathogen." Stover C.K., Pham X.-Q.T., Erwin A.L., Mizoguchi S.D., Warrener P., Hickey M.J., Brinkman F.S.L., Hufnagle W.O., Kowalik D.J., Lagrou M., Garber R.L., Goltry L., Tolentino E., Westbrock-Wadman S., Yuan Y., Brody L.L., Coulter S.N., Folger K.R. , Kas A., Larbig K., Lim R.M., Smith K.A., Spencer D.H., Wong G.K.-S., Wu Z., Paulsen I.T., Reizer J., Saier M.H. Jr., Hancock R.E.W., Lory S., Olson M.V. Nature 406:959-964(2000) [PubMed: 10984043] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228.
[2]	"Crystal structure of 16s rRNA processing protein from Pseudomonas aeruginosa at 2.46 A resolution." Joint center for structural genomics (JCSG) Submitted (FEB-2006) to the PDB data bank Cited for: X-RAY CRYSTALLOGRAPHY (2.46 ANGSTROMS).

Cross-references

Sequence databases

EMBL
GenBank
DDBJ

AE004091 Genomic DNA. Translation: AAG07131.1.

PIR

D83178.

RefSeq

NP_252433.1. NC_002516.2.

3D structure databases

PDBe
RCSB PDB
PDBj

Entry	Method	Resolution (Å)	Chain	Positions	PDBsum
2F1L	X-ray	2.46	A	1-175	[»]

ProteinModelPortal

Q9HXQ0.

SMR

Q9HXQ0. Positions 7-175.

ModBase

Search...

Protocols and materials databases

StructuralBiologyKnowledgebase

Search...

Genome annotation databases

GeneID

880358.

GenomeReviews

Gene locus PA3744 in contig AE004091_GR.

KEGG

pae:PA3744.

NMPDR

fig|208964.1.peg.3743.

PATRIC

19842117. VBIPseAer58763_3916.

Organism-specific databases

PseudoCAP

PA3744.

Phylogenomic databases

HOGENOM

HBG703775.

OMA

AYGIRGW.

ProtClustDB

PRK00122.

Enzyme and pathway databases

BioCyc

PAER208964:PA3744-MONOMER.

Family and domain databases

HAMAP

MF_00014. Ribosome_mat_RimM.
[Tree]

InterPro

IPR011961. 16S_RimM.
IPR007903. PRC_barrel.
IPR011033. PRC_barrell-like.
IPR002676. RimM.
IPR009000. Transl_elong_init/rib_B-barrel.
[Graphical view]

Gene3D

G3DSA:2.40.30.60. G3DSA:2.40.30.60. 1 hit.

KO

K02860.

Pfam

PF05239. PRC. 1 hit.
PF01782. RimM. 1 hit.
[Graphical view]

SUPFAM

SSF50346. PRCH_cytoplasmic. 1 hit.
SSF50447. Translat_factor. 1 hit.

TIGRFAMs

TIGR02273. 16S_RimM. 1 hit.

ProtoNet

Search...

Entry information

Entry name

RIMM_PSEAE

Accession

Primary (citable) accession number: Q9HXQ0

Entry history

Integrated into UniProtKB/Swiss-Prot:	June 20, 2001
Last sequence update:	March 1, 2001
Last modified:	January 25, 2012
This is version 70 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation program

Prokaryotic Protein Annotation Program