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Protein

Outer membrane protein assembly factor BamB

Gene

bamB

Organism
Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.UniRule annotation

GO - Biological processi

Complete GO annotation...

Names & Taxonomyi

Protein namesi
Recommended name:
Outer membrane protein assembly factor BamBUniRule annotation
Gene namesi
Name:bamBUniRule annotation
Ordered Locus Names:PA3800
OrganismiPseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Taxonomic identifieri208964 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaPseudomonadalesPseudomonadaceaePseudomonas
Proteomesi
  • UP000002438 Componenti: Chromosome

Organism-specific databases

PseudoCAPiPA3800.

Subcellular locationi

  • Cell outer membrane UniRule annotation; Lipid-anchor UniRule annotation

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Cell outer membrane, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Signal peptidei1 – 18UniRule annotationAdd BLAST18
ChainiPRO_000041768519 – 380Outer membrane protein assembly factor BamBAdd BLAST362

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Lipidationi19N-palmitoyl cysteineUniRule annotation1
Lipidationi19S-diacylglycerol cysteineUniRule annotation1

Keywords - PTMi

Lipoprotein, Palmitate

Proteomic databases

PaxDbiQ9HXJ7.
PRIDEiQ9HXJ7.

Interactioni

Subunit structurei

Part of the Bam complex.UniRule annotation

Protein-protein interaction databases

STRINGi208964.PA3800.

Structurei

Secondary structure

1380
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Beta strandi41 – 48Combined sources8
Turni50 – 55Combined sources6
Beta strandi63 – 65Combined sources3
Beta strandi68 – 72Combined sources5
Beta strandi76 – 82Combined sources7
Turni83 – 85Combined sources3
Beta strandi88 – 93Combined sources6
Beta strandi98 – 105Combined sources8
Beta strandi108 – 113Combined sources6
Beta strandi116 – 122Combined sources7
Turni123 – 125Combined sources3
Beta strandi128 – 133Combined sources6
Beta strandi146 – 152Combined sources7
Beta strandi156 – 162Combined sources7
Turni163 – 165Combined sources3
Beta strandi168 – 173Combined sources6
Beta strandi181 – 183Combined sources3
Beta strandi191 – 197Combined sources7
Beta strandi201 – 207Combined sources7
Turni208 – 210Combined sources3
Beta strandi213 – 218Combined sources6
Beta strandi232 – 234Combined sources3
Beta strandi238 – 241Combined sources4
Beta strandi244 – 247Combined sources4
Beta strandi253 – 258Combined sources6
Turni259 – 261Combined sources3
Beta strandi264 – 270Combined sources7
Beta strandi274 – 279Combined sources6
Beta strandi282 – 287Combined sources6
Turni288 – 290Combined sources3
Beta strandi291 – 296Combined sources6
Beta strandi301 – 306Combined sources6
Turni308 – 311Combined sources4
Beta strandi318 – 320Combined sources3
Beta strandi323 – 327Combined sources5
Beta strandi331 – 337Combined sources7
Turni338 – 340Combined sources3
Beta strandi343 – 348Combined sources6
Beta strandi359 – 361Combined sources3
Beta strandi364 – 368Combined sources5
Beta strandi372 – 379Combined sources8

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
4HDJX-ray1.85A20-380[»]
ProteinModelPortaliQ9HXJ7.
SMRiQ9HXJ7.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the BamB family.UniRule annotation

Keywords - Domaini

Signal

Phylogenomic databases

eggNOGiENOG4105CNE. Bacteria.
COG1520. LUCA.
HOGENOMiHOG000260995.
InParanoidiQ9HXJ7.
KOiK17713.
OMAiFTPTKVW.
PhylomeDBiQ9HXJ7.

Family and domain databases

Gene3Di2.140.10.10. 1 hit.
HAMAPiMF_00923. OM_assembly_BamB. 1 hit.
InterProiIPR017687. BamB.
IPR018391. PQQ_beta_propeller_repeat.
IPR002372. PQQ_repeat.
IPR027295. Quinoprotein_ADH-like_fam.
IPR011047. Quinoprotein_ADH-like_supfam.
[Graphical view]
PfamiPF13360. PQQ_2. 1 hit.
[Graphical view]
SMARTiSM00564. PQQ. 6 hits.
[Graphical view]
SUPFAMiSSF50998. SSF50998. 1 hit.
TIGRFAMsiTIGR03300. assembly_YfgL. 1 hit.
PROSITEiPS51257. PROKAR_LIPOPROTEIN. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

Q9HXJ7-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MVQWKHAALL ALALAVVGCS SNSKKELPPA ELTDFKEEVV LSKQWSRSVG
60 70 80 90 100
DGQGDLYNLL EPAVDGSTIY AASAEGRVMA IQRETGDVLW KKDLERPVSG
110 120 130 140 150
GVGVGYGLVL VGTLRGDVIA LDEATGKKKW TKRVNSEVLS APATNGDVVV
160 170 180 190 200
VQTQDDKLIG LDAASGDQRW IYESTVPVLT LRGTGAPLIA GNMALAGLAS
210 220 230 240 250
GKVVAVDVQR GLPIWEQRVA IPQGRSELDR VVDIDGGLLL SGDTLYVVSY
260 270 280 290 300
QGRAAALDVN SGRLLWQREA SSYVGVAEGF GNIYVSQASG SVEGLDSRGA
310 320 330 340 350
SSLWNNDALA RRQLSAPAVF SSNVVVGDLE GYVHLLSQVD GRFVGRERVD
360 370 380
SDGVRVRPLV VGSWMYVFGN GGKLVAYTIR
Length:380
Mass (Da):40,397
Last modified:March 1, 2001 - v1
Checksum:iFE4E97259F04EA50
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE004091 Genomic DNA. Translation: AAG07187.1.
PIRiC83171.
RefSeqiNP_252489.1. NC_002516.2.
WP_003092789.1. NC_002516.2.

Genome annotation databases

EnsemblBacteriaiAAG07187; AAG07187; PA3800.
GeneIDi878230.
KEGGipae:PA3800.
PATRICi19842243. VBIPseAer58763_3979.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE004091 Genomic DNA. Translation: AAG07187.1.
PIRiC83171.
RefSeqiNP_252489.1. NC_002516.2.
WP_003092789.1. NC_002516.2.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
4HDJX-ray1.85A20-380[»]
ProteinModelPortaliQ9HXJ7.
SMRiQ9HXJ7.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi208964.PA3800.

Proteomic databases

PaxDbiQ9HXJ7.
PRIDEiQ9HXJ7.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAG07187; AAG07187; PA3800.
GeneIDi878230.
KEGGipae:PA3800.
PATRICi19842243. VBIPseAer58763_3979.

Organism-specific databases

PseudoCAPiPA3800.

Phylogenomic databases

eggNOGiENOG4105CNE. Bacteria.
COG1520. LUCA.
HOGENOMiHOG000260995.
InParanoidiQ9HXJ7.
KOiK17713.
OMAiFTPTKVW.
PhylomeDBiQ9HXJ7.

Family and domain databases

Gene3Di2.140.10.10. 1 hit.
HAMAPiMF_00923. OM_assembly_BamB. 1 hit.
InterProiIPR017687. BamB.
IPR018391. PQQ_beta_propeller_repeat.
IPR002372. PQQ_repeat.
IPR027295. Quinoprotein_ADH-like_fam.
IPR011047. Quinoprotein_ADH-like_supfam.
[Graphical view]
PfamiPF13360. PQQ_2. 1 hit.
[Graphical view]
SMARTiSM00564. PQQ. 6 hits.
[Graphical view]
SUPFAMiSSF50998. SSF50998. 1 hit.
TIGRFAMsiTIGR03300. assembly_YfgL. 1 hit.
PROSITEiPS51257. PROKAR_LIPOPROTEIN. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiBAMB_PSEAE
AccessioniPrimary (citable) accession number: Q9HXJ7
Entry historyi
Integrated into UniProtKB/Swiss-Prot: June 13, 2012
Last sequence update: March 1, 2001
Last modified: November 2, 2016
This is version 88 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.