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Protein
Submitted name:

Vanillate porin OpdK

Gene

opdK

Organism
Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

Complete GO annotation...

Protein family/group databases

TCDBi1.B.25.1.8. the outer membrane porin (opr) family.

Names & Taxonomyi

Protein namesi
Submitted name:
Vanillate porin OpdKImported
Gene namesi
Name:opdKImported
Ordered Locus Names:PA4898Imported
OrganismiPseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228)Imported
Taxonomic identifieri208964 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaPseudomonadalesPseudomonadaceaePseudomonas
Proteomesi
  • UP000002438 Componenti: Chromosome

Organism-specific databases

PseudoCAPiPA4898.

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 2727Sequence analysisAdd
BLAST
Chaini28 – 417390Sequence analysisPRO_5004326799Add
BLAST

Proteomic databases

PaxDbiQ9HUR5.

Interactioni

Protein-protein interaction databases

STRINGi208964.PA4898.

Structurei

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
2QTKX-ray2.80A/B28-417[»]
2Y2XX-ray1.65A/B28-417[»]
3SYSX-ray1.65A/B28-417[»]
ProteinModelPortaliQ9HUR5.
SMRiQ9HUR5. Positions 31-417.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ9HUR5.

Family & Domainsi

Keywords - Domaini

SignalSequence analysis

Phylogenomic databases

eggNOGiENOG4105EPF. Bacteria.
ENOG410XRCF. LUCA.
HOGENOMiHOG000220145.
InParanoidiQ9HUR5.
OMAiMQDLSAW.
OrthoDBiEOG6S7XQQ.
PhylomeDBiQ9HUR5.

Family and domain databases

Gene3Di2.40.160.10. 1 hit.
InterProiIPR005318. OM_porin_bac.
IPR023614. Porin_dom.
[Graphical view]
PfamiPF03573. OprD. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q9HUR5-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKIRRKTAVP RNAGAVLPML ACLAAQAAEG GFLEDAKTDL VLRNYYFNRD
60 70 80 90 100
FRDHDAGKSL VDEWAQGFIL KFSSGYTPGT VGVGLDAIGL FGVKLNSGRG
110 120 130 140 150
TSNSELLPLH DDGRAADNYG RVGVAAKLRV SASELKIGEM LPDIPLLRYD
160 170 180 190 200
DGRLLPQTFR GFAVVSRELP GLALQAGRFD AVSLRNSADM QDLSAWSAPT
210 220 230 240 250
QKSDGFNYAG AEYRFNRERT QLGLWHGQLE DVYRQSYANL LHKQRVGDWT
260 270 280 290 300
LGANLGLFVD RDDGAARAGE IDSHTVYGLF SAGIGLHTFY LGLQKVGGDS
310 320 330 340 350
GWQSVYGSSG RSMGNDMFNG NFTNADERSW QVRYDYDFVG LGWPGLIGMV
360 370 380 390 400
RYGHGSNATT KAGSGGKEWE RDVELGYTVQ SGPLARLNVR LNHASNRRSF
410
NSDFDQTRLV VSYPLSW
Length:417
Mass (Da):45,778
Last modified:March 1, 2001 - v1
Checksum:i54C55F2D33707448
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE004091 Genomic DNA. Translation: AAG08283.1.
PIRiH83032.
RefSeqiNP_253585.1. NC_002516.2.
WP_003121137.1. NZ_ASJY01000781.1.

Genome annotation databases

EnsemblBacteriaiAAG08283; AAG08283; PA4898.
GeneIDi879748.
KEGGipae:PA4898.
PATRICi19844600. VBIPseAer58763_5131.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE004091 Genomic DNA. Translation: AAG08283.1.
PIRiH83032.
RefSeqiNP_253585.1. NC_002516.2.
WP_003121137.1. NZ_ASJY01000781.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
2QTKX-ray2.80A/B28-417[»]
2Y2XX-ray1.65A/B28-417[»]
3SYSX-ray1.65A/B28-417[»]
ProteinModelPortaliQ9HUR5.
SMRiQ9HUR5. Positions 31-417.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi208964.PA4898.

Protein family/group databases

TCDBi1.B.25.1.8. the outer membrane porin (opr) family.

Proteomic databases

PaxDbiQ9HUR5.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAG08283; AAG08283; PA4898.
GeneIDi879748.
KEGGipae:PA4898.
PATRICi19844600. VBIPseAer58763_5131.

Organism-specific databases

PseudoCAPiPA4898.

Phylogenomic databases

eggNOGiENOG4105EPF. Bacteria.
ENOG410XRCF. LUCA.
HOGENOMiHOG000220145.
InParanoidiQ9HUR5.
OMAiMQDLSAW.
OrthoDBiEOG6S7XQQ.
PhylomeDBiQ9HUR5.

Miscellaneous databases

EvolutionaryTraceiQ9HUR5.

Family and domain databases

Gene3Di2.40.160.10. 1 hit.
InterProiIPR005318. OM_porin_bac.
IPR023614. Porin_dom.
[Graphical view]
PfamiPF03573. OprD. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228Imported.
  2. "Crystal structure of the outer membrane protein OpdK from Pseudomonas aeruginosa."
    Biswas S., Mohammad M.M., Movileanu L., van den Berg B.
    Structure 16:1027-1035(2008) [PubMed] [Europe PMC] [Abstract]
    Cited for: X-RAY CRYSTALLOGRAPHY (2.80 ANGSTROMS) OF 28-417.
  3. "Pseudomonas Aeruginosa Opdk with Vanillate."
    Touw D.S., Vijayaraghavan J., Vandenberg B.
    Submitted (DEC-2010) to the PDB data bank
    Cited for: X-RAY CRYSTALLOGRAPHY (1.65 ANGSTROMS) OF 28-417.
  4. Cited for: X-RAY CRYSTALLOGRAPHY (1.65 ANGSTROMS) OF 28-417.

Entry informationi

Entry nameiQ9HUR5_PSEAE
AccessioniPrimary (citable) accession number: Q9HUR5
Entry historyi
Integrated into UniProtKB/TrEMBL: March 1, 2001
Last sequence update: March 1, 2001
Last modified: March 16, 2016
This is version 77 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

3D-structureCombined sources, Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.