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Protein
Submitted name:

AmpDh2

Gene

ampDh2

Organism
Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Metal bindingi42Zinc; via pros nitrogenCombined sources1
Binding sitei70N-acetyl-D-glucosamineCombined sources1
Metal bindingi153Zinc; via pros nitrogenCombined sources1
Metal bindingi163ZincCombined sources1
Binding sitei241N-acetyl-D-glucosamine; via carbonyl oxygenCombined sources1

GO - Molecular functioni

  • metal ion binding Source: UniProtKB-KW
  • N-acetylmuramoyl-L-alanine amidase activity Source: PseudoCAP

GO - Biological processi

Keywordsi

LigandMetal-bindingCombined sources, ZincCombined sources

Names & Taxonomyi

Protein namesi
Submitted name:
AmpDh2Imported
Gene namesi
Name:ampDh2Imported
Ordered Locus Names:PA5485Imported
OrganismiPseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)Imported
Taxonomic identifieri208964 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaPseudomonadalesPseudomonadaceaePseudomonas
Proteomesi
  • UP000002438 Componenti: Chromosome

Organism-specific databases

PseudoCAPiPA5485.

Subcellular locationi

GO - Cellular componenti

  • Gram-negative-bacterium-type cell wall Source: PseudoCAP
  • outer membrane Source: GO_Central

PTM / Processingi

Proteomic databases

PaxDbiQ9HT86.
PRIDEiQ9HT86.

Interactioni

Protein-protein interaction databases

STRINGi208964.PA5485.

Structurei

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
4BJ4X-ray1.72A/B18-259[»]
4BOLX-ray1.70A/B1-259[»]
4BPAX-ray2.70A/B1-259[»]
ProteinModelPortaliQ9HT86.
SMRiQ9HT86.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini24 – 165Ami_2InterPro annotationAdd BLAST142

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Regioni158 – 160N-acetyl-D-glucosamine bindingCombined sources3
Regioni227 – 230N-acetyl-D-glucosamine bindingCombined sources4

Phylogenomic databases

eggNOGiENOG4108VBV. Bacteria.
COG3023. LUCA.
HOGENOMiHOG000255964.
InParanoidiQ9HT86.
KOiK11066.
OMAiDIKPTRV.
PhylomeDBiQ9HT86.

Family and domain databases

CDDicd06583. PGRP. 1 hit.
Gene3Di1.10.101.10. 1 hit.
3.40.80.10. 1 hit.
InterProiView protein in InterPro
IPR002502. Amidase_domain.
IPR036505. Amidase_sf.
IPR002477. Peptidoglycan-bd-like.
IPR036365. PGBD-like_sf.
IPR036366. PGBDSf.
PfamiView protein in Pfam
PF01510. Amidase_2. 1 hit.
PF01471. PG_binding_1. 1 hit.
SMARTiView protein in SMART
SM00644. Ami_2. 1 hit.
SUPFAMiSSF47090. SSF47090. 1 hit.
SSF55846. SSF55846. 1 hit.

Sequencei

Sequence statusi: Complete.

Q9HT86-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MRSFVLLAFT LSLLAGCSSG PRLNTDYTSA NQDSRVQFIV LHYTSTDLPH
60 70 80 90 100
SLGILTHGGV SAHYLIGDDE PATVYRLVDE NRRAWHAGVS EWQGRTWLNA
110 120 130 140 150
TSIGIEIVNQ GYRDTPQGRV WYPFSEAQIQ ALIPLLKDIA KRHGITPDRI
160 170 180 190 200
IGHSDIAPGR KVDPGPLFPW KRLADAGLVP WPKPGELARR LAELNGQLPD
210 220 230 240 250
VRWFQQQLAR HGYLVPQTGE LEKDTRDVIG AFQMKYRPAR FDGEPDLETA

ALLLAVPTS
Length:259
Mass (Da):28,881
Last modified:March 1, 2001 - v1
Checksum:i4E299ECD2CFD91C3
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE004091 Genomic DNA. Translation: AAG08870.1.
PIRiD82960.
RefSeqiNP_254172.1. NC_002516.2.
WP_003096970.1. NC_002516.2.

Genome annotation databases

EnsemblBacteriaiAAG08870; AAG08870; PA5485.
GeneIDi880851.
KEGGipae:PA5485.
PATRICifig|208964.12.peg.5750.

Similar proteinsi

Entry informationi

Entry nameiQ9HT86_PSEAE
AccessioniPrimary (citable) accession number: Q9HT86
Entry historyiIntegrated into UniProtKB/TrEMBL: March 1, 2001
Last sequence update: March 1, 2001
Last modified: October 25, 2017
This is version 96 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

3D-structureCombined sources, Complete proteome, Reference proteomeImported