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Protein

Pyruvoyl-dependent arginine decarboxylase

Gene

pdaD

Organism
Halobacterium salinarum (strain ATCC 700922 / JCM 11081 / NRC-1) (Halobacterium halobium)
Status
Reviewed-Annotation score: -Protein inferred from homologyi

Functioni

Catalytic activityi

L-arginine = agmatine + CO2.

Cofactori

pyruvateBy similarityNote: Binds 1 pyruvoyl group covalently per subunit.By similarity

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionDecarboxylase, Lyase
LigandPyruvate

Names & Taxonomyi

Protein namesi
Recommended name:
Pyruvoyl-dependent arginine decarboxylase (EC:4.1.1.19)
Short name:
PvlArgDC
Cleaved into the following 2 chains:
Gene namesi
Name:pdaD
Ordered Locus Names:VNG_1999H
OrganismiHalobacterium salinarum (strain ATCC 700922 / JCM 11081 / NRC-1) (Halobacterium halobium)
Taxonomic identifieri64091 [NCBI]
Taxonomic lineageiArchaeaEuryarchaeotaHalobacteriaHalobacterialesHalobacteriaceaeHalobacterium
Proteomesi
  • UP000000554 Componenti: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00000233081 – 38Pyruvoyl-dependent arginine decarboxylase subunit betaBy similarityAdd BLAST38
ChainiPRO_000002330939 – 160Pyruvoyl-dependent arginine decarboxylase subunit alphaBy similarityAdd BLAST122

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Modified residuei39Pyruvic acid (Ser)By similarity1

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Sitei38 – 39Cleavage (non-hydrolytic)By similarity2

Proteomic databases

PaxDbiQ9HNQ0

Interactioni

Protein-protein interaction databases

STRINGi64091.VNG1999H

Structurei

3D structure databases

ProteinModelPortaliQ9HNQ0
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the PdaD family.Curated

Phylogenomic databases

eggNOGiarCOG04490 Archaea
COG1945 LUCA
InParanoidiQ9HNQ0
KOiK02626
OMAiTIRVVWG
OrthoDBiPOG093Z0EQM

Family and domain databases

Gene3Di3.50.20.10, 1 hit
InterProiView protein in InterPro
IPR016104 Pyr-dep_his/arg-deCO2ase
IPR016105 Pyr-dep_his/arg-deCO2ase_sand
IPR002724 Pyruvoyl-dep_arg_deCO2ase
PANTHERiPTHR40438 PTHR40438, 1 hit
PfamiView protein in Pfam
PF01862 PvlArgDC, 1 hit
PIRSFiPIRSF005216 Pyruvoyl-dep_arg_deCO2ase, 1 hit
ProDomiView protein in ProDom or Entries sharing at least one domain
PD010449 Pyruvoyl-dep_arg_deCO2ase, 1 hit
SFLDiSFLDG01170 Pyruvoyl-dependent_arginine_de, 1 hit
SUPFAMiSSF56271 SSF56271, 1 hit

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

Q9HNQ0-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MPRIRIAWGS GVAPTEMAAY DAALADANVH NYNLIRVSSV IPADATVSPV
60 70 80 90 100
DTAPDLGPAG NTLTVVEARG QTAGPGQASA GLAWAPRDGA PGLFYEAADE
110 120 130 140 150
TTPDDVADRV TTGITAGMDV RDWDGVEPSV RTETVTADAG EHAAAVVIAA
160
YGDSDPVFDQ
Length:160
Mass (Da):16,364
Last modified:March 1, 2001 - v1
Checksum:iB77749F3A1E97BCD
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE004437 Genomic DNA Translation: AAG20170.1
PIRiF84350
RefSeqiWP_010903471.1, NC_002607.1

Genome annotation databases

EnsemblBacteriaiAAG20170; AAG20170; VNG_1999H
GeneIDi5953199
KEGGihal:VNG_1999H
PATRICifig|64091.14.peg.1527

Similar proteinsi

Entry informationi

Entry nameiPDAD_HALSA
AccessioniPrimary (citable) accession number: Q9HNQ0
Entry historyiIntegrated into UniProtKB/Swiss-Prot: July 11, 2002
Last sequence update: March 1, 2001
Last modified: May 23, 2018
This is version 86 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

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