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Protein

UPF0147 protein Ta0600

Gene

Ta0600

Organism
Thermoplasma acidophilum (strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 / AMRC-C165)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Names & Taxonomyi

Protein namesi
Recommended name:
UPF0147 protein Ta0600
Gene namesi
Ordered Locus Names:Ta0600
OrganismiThermoplasma acidophilum (strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 / AMRC-C165)
Taxonomic identifieri273075 [NCBI]
Taxonomic lineageiArchaeaEuryarchaeotaThermoplasmataThermoplasmatalesThermoplasmataceaeThermoplasma
Proteomesi
  • UP000001024 Componenti: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 8888UPF0147 protein Ta0600PRO_0000150919Add
BLAST

Proteomic databases

PRIDEiQ9HKJ8.

Interactioni

Protein-protein interaction databases

STRINGi273075.Ta0600.

Structurei

Secondary structure

1
88
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Helixi3 – 2018Combined sources
Helixi27 – 4014Combined sources
Helixi47 – 6216Combined sources
Helixi69 – 8517Combined sources

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
2QSBX-ray1.30A1-86[»]
ProteinModelPortaliQ9HKJ8.
SMRiQ9HKJ8. Positions 2-86.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ9HKJ8.

Family & Domainsi

Sequence similaritiesi

Belongs to the UPF0147 family.Curated

Phylogenomic databases

eggNOGiarCOG04308. Archaea.
COG1698. LUCA.
HOGENOMiHOG000230151.
OMAiNDINMPF.

Family and domain databases

Gene3Di1.20.1440.50. 1 hit.
HAMAPiMF_00342. UPF0147.
InterProiIPR023130. Ta0600-like_domain.
IPR005354. UPF0147.
[Graphical view]
PfamiPF03685. UPF0147. 1 hit.
[Graphical view]
ProDomiPD029943. UPF0147. 1 hit.
[Graphical view] [Entries sharing at least one domain]

Sequencei

Sequence statusi: Complete.

Q9HKJ8-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MVRVDQNLFN EVMYLLDELS QDITVPKNVR KVAQDSKAKL SQENESLDLR
60 70 80
CATVLSMLDE MANDPNVPAH GRTDLYTIIS KLEALSKS
Length:88
Mass (Da):9,909
Last modified:March 1, 2001 - v1
Checksum:i75F5656A9BBEADB1
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL445064 Genomic DNA. Translation: CAC11739.1.

Genome annotation databases

EnsemblBacteriaiCAC11739; CAC11739; CAC11739.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL445064 Genomic DNA. Translation: CAC11739.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
2QSBX-ray1.30A1-86[»]
ProteinModelPortaliQ9HKJ8.
SMRiQ9HKJ8. Positions 2-86.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi273075.Ta0600.

Proteomic databases

PRIDEiQ9HKJ8.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiCAC11739; CAC11739; CAC11739.

Phylogenomic databases

eggNOGiarCOG04308. Archaea.
COG1698. LUCA.
HOGENOMiHOG000230151.
OMAiNDINMPF.

Miscellaneous databases

EvolutionaryTraceiQ9HKJ8.

Family and domain databases

Gene3Di1.20.1440.50. 1 hit.
HAMAPiMF_00342. UPF0147.
InterProiIPR023130. Ta0600-like_domain.
IPR005354. UPF0147.
[Graphical view]
PfamiPF03685. UPF0147. 1 hit.
[Graphical view]
ProDomiPD029943. UPF0147. 1 hit.
[Graphical view] [Entries sharing at least one domain]
ProtoNetiSearch...

Publicationsi

  1. "The genome sequence of the thermoacidophilic scavenger Thermoplasma acidophilum."
    Ruepp A., Graml W., Santos-Martinez M.-L., Koretke K.K., Volker C., Mewes H.-W., Frishman D., Stocker S., Lupas A.N., Baumeister W.
    Nature 407:508-513(2000) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 / AMRC-C165.

Entry informationi

Entry nameiY600_THEAC
AccessioniPrimary (citable) accession number: Q9HKJ8
Entry historyi
Integrated into UniProtKB/Swiss-Prot: April 27, 2001
Last sequence update: March 1, 2001
Last modified: December 9, 2015
This is version 67 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. SIMILARITY comments
    Index of protein domains and families
  3. Uncharacterized protein families (UPF)
    List of uncharacterized protein family (UPF) entries

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.