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Protein

30S ribosomal protein S27ae

Gene

rps27ae

Organism
Thermoplasma acidophilum (strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 / AMRC-C165)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

Cofactori

Zn2+UniRule annotationNote: Binds 1 zinc ion per subunit.UniRule annotation

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Metal bindingi21 – 211ZincUniRule annotation
Metal bindingi24 – 241ZincUniRule annotation
Metal bindingi39 – 391ZincUniRule annotation
Metal bindingi42 – 421ZincUniRule annotation

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Zinc fingeri21 – 4222C4-typeUniRule annotationAdd
BLAST

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Keywords - Ligandi

Metal-binding, Zinc

Names & Taxonomyi

Protein namesi
Recommended name:
30S ribosomal protein S27aeUniRule annotation
Gene namesi
Name:rps27aeUniRule annotation
Ordered Locus Names:Ta1093
OrganismiThermoplasma acidophilum (strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 / AMRC-C165)
Taxonomic identifieri273075 [NCBI]
Taxonomic lineageiArchaeaEuryarchaeotaThermoplasmataThermoplasmatalesThermoplasmataceaeThermoplasma
Proteomesi
  • UP000001024 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 555530S ribosomal protein S27aePRO_0000137709Add
BLAST

Interactioni

Subunit structurei

Part of the 30S ribosomal subunit.UniRule annotation

Protein-protein interaction databases

STRINGi273075.Ta1093.

Structurei

Secondary structure

1
55
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Turni22 – 276Combined sources
Beta strandi34 – 385Combined sources
Turni40 – 423Combined sources

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
2K4XNMR-A1-55[»]
ProteinModelPortaliQ9HJ78.
SMRiQ9HJ78. Positions 1-55.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ9HJ78.

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein S27Ae family.UniRule annotation

Zinc finger

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Zinc fingeri21 – 4222C4-typeUniRule annotationAdd
BLAST

Keywords - Domaini

Zinc-finger

Phylogenomic databases

eggNOGiarCOG04183. Archaea.
COG1998. LUCA.
HOGENOMiHOG000223075.
KOiK02977.
OMAiKWKLYEV.

Family and domain databases

HAMAPiMF_00777. Ribosomal_S27ae.
InterProiIPR002906. Ribosomal_S27a.
IPR022845. Ribosomal_S27ae.
IPR011332. Ribosomal_zn-bd.
[Graphical view]
PfamiPF01599. Ribosomal_S27. 1 hit.
[Graphical view]
SMARTiSM01402. Ribosomal_S27. 1 hit.
[Graphical view]
SUPFAMiSSF57829. SSF57829. 1 hit.

Sequencei

Sequence statusi: Complete.

Q9HJ78-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MQKRELYEIA DGKLVRKHRF CPRCGPGVFL AEHADRYSCG RCGYTEFKKA

KKSKS
Length:55
Mass (Da):6,381
Last modified:March 1, 2001 - v1
Checksum:iD7CA22835955239D
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL445066 Genomic DNA. Translation: CAC12221.1.
RefSeqiWP_010901503.1. NC_002578.1.

Genome annotation databases

EnsemblBacteriaiCAC12221; CAC12221; CAC12221.
GeneIDi1456603.
KEGGitac:Ta1093.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL445066 Genomic DNA. Translation: CAC12221.1.
RefSeqiWP_010901503.1. NC_002578.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
2K4XNMR-A1-55[»]
ProteinModelPortaliQ9HJ78.
SMRiQ9HJ78. Positions 1-55.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi273075.Ta1093.

Protocols and materials databases

DNASUi1456603.
Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiCAC12221; CAC12221; CAC12221.
GeneIDi1456603.
KEGGitac:Ta1093.

Phylogenomic databases

eggNOGiarCOG04183. Archaea.
COG1998. LUCA.
HOGENOMiHOG000223075.
KOiK02977.
OMAiKWKLYEV.

Miscellaneous databases

EvolutionaryTraceiQ9HJ78.

Family and domain databases

HAMAPiMF_00777. Ribosomal_S27ae.
InterProiIPR002906. Ribosomal_S27a.
IPR022845. Ribosomal_S27ae.
IPR011332. Ribosomal_zn-bd.
[Graphical view]
PfamiPF01599. Ribosomal_S27. 1 hit.
[Graphical view]
SMARTiSM01402. Ribosomal_S27. 1 hit.
[Graphical view]
SUPFAMiSSF57829. SSF57829. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. "The genome sequence of the thermoacidophilic scavenger Thermoplasma acidophilum."
    Ruepp A., Graml W., Santos-Martinez M.-L., Koretke K.K., Volker C., Mewes H.-W., Frishman D., Stocker S., Lupas A.N., Baumeister W.
    Nature 407:508-513(2000) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 / AMRC-C165.

Entry informationi

Entry nameiRS27A_THEAC
AccessioniPrimary (citable) accession number: Q9HJ78
Entry historyi
Integrated into UniProtKB/Swiss-Prot: May 10, 2004
Last sequence update: March 1, 2001
Last modified: May 11, 2016
This is version 79 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.