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Q9HCG1

- ZN160_HUMAN

UniProt

Q9HCG1 - ZN160_HUMAN

Protein

Zinc finger protein 160

Gene

ZNF160

Organism
Homo sapiens (Human)
Status
Reviewed - Annotation score: 4 out of 5- Experimental evidence at transcript leveli
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    • History
      Entry version 127 (01 Oct 2014)
      Sequence version 3 (18 May 2010)
      Previous versions | rss
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    Functioni

    May be involved in transcriptional regulation.

    Regions

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Zinc fingeri257 – 27923C2H2-type 1PROSITE-ProRule annotationAdd
    BLAST
    Zinc fingeri285 – 30723C2H2-type 2PROSITE-ProRule annotationAdd
    BLAST
    Zinc fingeri313 – 33523C2H2-type 3PROSITE-ProRule annotationAdd
    BLAST
    Zinc fingeri341 – 36323C2H2-type 4PROSITE-ProRule annotationAdd
    BLAST
    Zinc fingeri369 – 39123C2H2-type 5PROSITE-ProRule annotationAdd
    BLAST
    Zinc fingeri397 – 41923C2H2-type 6PROSITE-ProRule annotationAdd
    BLAST
    Zinc fingeri425 – 44723C2H2-type 7PROSITE-ProRule annotationAdd
    BLAST
    Zinc fingeri453 – 47523C2H2-type 8PROSITE-ProRule annotationAdd
    BLAST
    Zinc fingeri481 – 50323C2H2-type 9PROSITE-ProRule annotationAdd
    BLAST
    Zinc fingeri509 – 53123C2H2-type 10PROSITE-ProRule annotationAdd
    BLAST
    Zinc fingeri537 – 55923C2H2-type 11PROSITE-ProRule annotationAdd
    BLAST
    Zinc fingeri565 – 58723C2H2-type 12PROSITE-ProRule annotationAdd
    BLAST
    Zinc fingeri593 – 61523C2H2-type 13PROSITE-ProRule annotationAdd
    BLAST
    Zinc fingeri621 – 64323C2H2-type 14PROSITE-ProRule annotationAdd
    BLAST
    Zinc fingeri649 – 67123C2H2-type 15PROSITE-ProRule annotationAdd
    BLAST
    Zinc fingeri677 – 69923C2H2-type 16PROSITE-ProRule annotationAdd
    BLAST
    Zinc fingeri705 – 72723C2H2-type 17PROSITE-ProRule annotationAdd
    BLAST
    Zinc fingeri733 – 75523C2H2-type 18PROSITE-ProRule annotationAdd
    BLAST
    Zinc fingeri761 – 78323C2H2-type 19PROSITE-ProRule annotationAdd
    BLAST
    Zinc fingeri789 – 81123C2H2-type 20PROSITE-ProRule annotationAdd
    BLAST

    GO - Molecular functioni

    1. DNA binding Source: UniProtKB-KW
    2. metal ion binding Source: UniProtKB-KW

    GO - Biological processi

    1. hemopoiesis Source: UniProtKB
    2. regulation of transcription, DNA-templated Source: UniProtKB-KW
    3. transcription, DNA-templated Source: UniProtKB-KW

    Keywords - Biological processi

    Transcription, Transcription regulation

    Keywords - Ligandi

    DNA-binding, Metal-binding, Zinc

    Enzyme and pathway databases

    ReactomeiREACT_12627. Generic Transcription Pathway.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Zinc finger protein 160
    Alternative name(s):
    Zinc finger protein HZF5
    Zinc finger protein Kr18
    Short name:
    HKr18
    Gene namesi
    Name:ZNF160
    Synonyms:KIAA1611
    OrganismiHomo sapiens (Human)
    Taxonomic identifieri9606 [NCBI]
    Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo
    ProteomesiUP000005640: Chromosome 19

    Organism-specific databases

    HGNCiHGNC:12948. ZNF160.

    Subcellular locationi

    Nucleus Curated

    GO - Cellular componenti

    1. nucleus Source: UniProtKB-SubCell

    Keywords - Cellular componenti

    Nucleus

    Pathology & Biotechi

    Organism-specific databases

    PharmGKBiPA37531.

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 818818Zinc finger protein 160PRO_0000047433Add
    BLAST

    Proteomic databases

    PaxDbiQ9HCG1.
    PRIDEiQ9HCG1.

    PTM databases

    PhosphoSiteiQ9HCG1.

    Expressioni

    Tissue specificityi

    Ubiquitous.1 Publication

    Gene expression databases

    ArrayExpressiQ9HCG1.
    BgeeiQ9HCG1.
    CleanExiHS_ZNF160.
    GenevestigatoriQ9HCG1.

    Organism-specific databases

    HPAiHPA023599.

    Interactioni

    Protein-protein interaction databases

    BioGridi124698. 3 interactions.
    IntActiQ9HCG1. 4 interactions.
    STRINGi9606.ENSP00000270457.

    Structurei

    3D structure databases

    ProteinModelPortaliQ9HCG1.
    SMRiQ9HCG1. Positions 8-48, 214-818.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Domains and Repeats

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Domaini8 – 7972KRABPROSITE-ProRule annotationAdd
    BLAST

    Sequence similaritiesi

    Contains 20 C2H2-type zinc fingers.PROSITE-ProRule annotation
    Contains 1 KRAB domain.PROSITE-ProRule annotation

    Zinc finger

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Zinc fingeri257 – 27923C2H2-type 1PROSITE-ProRule annotationAdd
    BLAST
    Zinc fingeri285 – 30723C2H2-type 2PROSITE-ProRule annotationAdd
    BLAST
    Zinc fingeri313 – 33523C2H2-type 3PROSITE-ProRule annotationAdd
    BLAST
    Zinc fingeri341 – 36323C2H2-type 4PROSITE-ProRule annotationAdd
    BLAST
    Zinc fingeri369 – 39123C2H2-type 5PROSITE-ProRule annotationAdd
    BLAST
    Zinc fingeri397 – 41923C2H2-type 6PROSITE-ProRule annotationAdd
    BLAST
    Zinc fingeri425 – 44723C2H2-type 7PROSITE-ProRule annotationAdd
    BLAST
    Zinc fingeri453 – 47523C2H2-type 8PROSITE-ProRule annotationAdd
    BLAST
    Zinc fingeri481 – 50323C2H2-type 9PROSITE-ProRule annotationAdd
    BLAST
    Zinc fingeri509 – 53123C2H2-type 10PROSITE-ProRule annotationAdd
    BLAST
    Zinc fingeri537 – 55923C2H2-type 11PROSITE-ProRule annotationAdd
    BLAST
    Zinc fingeri565 – 58723C2H2-type 12PROSITE-ProRule annotationAdd
    BLAST
    Zinc fingeri593 – 61523C2H2-type 13PROSITE-ProRule annotationAdd
    BLAST
    Zinc fingeri621 – 64323C2H2-type 14PROSITE-ProRule annotationAdd
    BLAST
    Zinc fingeri649 – 67123C2H2-type 15PROSITE-ProRule annotationAdd
    BLAST
    Zinc fingeri677 – 69923C2H2-type 16PROSITE-ProRule annotationAdd
    BLAST
    Zinc fingeri705 – 72723C2H2-type 17PROSITE-ProRule annotationAdd
    BLAST
    Zinc fingeri733 – 75523C2H2-type 18PROSITE-ProRule annotationAdd
    BLAST
    Zinc fingeri761 – 78323C2H2-type 19PROSITE-ProRule annotationAdd
    BLAST
    Zinc fingeri789 – 81123C2H2-type 20PROSITE-ProRule annotationAdd
    BLAST

    Keywords - Domaini

    Repeat, Zinc-finger

    Phylogenomic databases

    eggNOGiCOG5048.
    HOGENOMiHOG000234617.
    HOVERGENiHBG018163.
    InParanoidiQ9HCG1.
    KOiK09228.
    OMAiQNENIAG.
    OrthoDBiEOG7KSX7Q.
    PhylomeDBiQ9HCG1.
    TreeFamiTF341892.

    Family and domain databases

    Gene3Di3.30.160.60. 20 hits.
    InterProiIPR001909. Krueppel-associated_box.
    IPR007087. Znf_C2H2.
    IPR015880. Znf_C2H2-like.
    IPR013087. Znf_C2H2/integrase_DNA-bd.
    [Graphical view]
    PfamiPF01352. KRAB. 1 hit.
    [Graphical view]
    SMARTiSM00349. KRAB. 1 hit.
    SM00355. ZnF_C2H2. 20 hits.
    [Graphical view]
    SUPFAMiSSF109640. SSF109640. 1 hit.
    PROSITEiPS50805. KRAB. 1 hit.
    PS00028. ZINC_FINGER_C2H2_1. 20 hits.
    PS50157. ZINC_FINGER_C2H2_2. 20 hits.
    [Graphical view]

    Sequences (2)i

    Sequence statusi: Complete.

    This entry describes 2 isoformsi produced by alternative splicing. Align

    Isoform 1 (identifier: Q9HCG1-1) [UniParc]FASTAAdd to Basket

    This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

    « Hide

    MALTQVRLTF RDVAIEFSQE EWKCLDPAQR ILYRDVMLEN YWNLVSLGLC    50
    HFDMNIISML EEGKEPWTVK SCVKIARKPR TPECVKGVVT DIPPKCTIKD 100
    LLPKEKSSTE AVFHTVVLER HESPDIEDFS FKEPQKNVHD FECQWRDDTG 150
    NYKGVLMAQK EGKRDQRDRR DIENKLMNNQ LGVSFHSHLP ELQLFQGEGK 200
    MYECNQVEKS TNNGSSVSPL QQIPSSVQTH RSKKYHELNH FSLLTQRRKA 250
    NSCGKPYKCN ECGKAFTQNS NLTSHRRIHS GEKPYKCSEC GKTFTVRSNL 300
    TIHQVIHTGE KPYKCHECGK VFRHNSYLAT HRRIHTGEKP YKCNECGKAF 350
    RGHSNLTTHQ LIHTGEKPFK CNECGKLFTQ NSHLISHWRI HTGEKPYKCN 400
    ECGKAFSVRS SLAIHQTIHT GEKPYKCNEC GKVFRYNSYL GRHRRVHTGE 450
    KPYKCNECGK AFSMHSNLAT HQVIHTGTKP FKCNECSKVF TQNSQLANHR 500
    RIHTGEKPYK CNECGKAFSV RSSLTTHQAI HSGEKPYKCI ECGKSFTQKS 550
    HLRSHRGIHS GEKPYKCNEC GKVFAQTSQL ARHWRVHTGE KPYKCNDCGR 600
    AFSDRSSLTF HQAIHTGEKP YKCHECGKVF RHNSYLATHR RIHTGEKPYK 650
    CNECGKAFSM HSNLTTHKVI HTGEKPYKCN QCGKVFTQNS HLANHQRTHT 700
    GEKPYRCNEC GKAFSVRSSL TTHQAIHTGK KPYKCNECGK VFTQNAHLAN 750
    HRRIHTGEKP YRCTECGKAF RVRSSLTTHM AIHTGEKRYK CNECGKVFRQ 800
    SSNLASHHRM HTGEKPYK 818
    Length:818
    Mass (Da):94,112
    Last modified:May 18, 2010 - v3
    Checksum:i00C5BE5E3E74B76B
    GO
    Isoform 2 (identifier: Q9HCG1-2) [UniParc]FASTAAdd to Basket

    The sequence of this isoform differs from the canonical sequence as follows:
         92-147: IPPKCTIKDL...VHDFECQWRD → LLRRWKHWLL...VCDKRVGSIF
         148-818: Missing.

    Note: No experimental confirmation available.

    Show »
    Length:147
    Mass (Da):17,112
    Checksum:i83D6F9CBB03F4735
    GO

    Sequence cautioni

    The sequence CAA55528.1 differs from that shown. Reason: Dubious alternative splicing.

    Natural variant

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Natural varianti7 – 71R → Q.
    Corresponds to variant rs329709 [ dbSNP | Ensembl ].
    VAR_057400
    Natural varianti82 – 821P → R.2 Publications
    Corresponds to variant rs8105668 [ dbSNP | Ensembl ].
    VAR_060274

    Alternative sequence

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Alternative sequencei92 – 14756IPPKC…CQWRD → LLRRWKHWLLLLGICCPKPH GRVSSRLRLSRSLGHFFHSA FATFMGVCDKRVGSIF in isoform 2. 1 PublicationVSP_055940Add
    BLAST
    Alternative sequencei148 – 818671Missing in isoform 2. 1 PublicationVSP_055941Add
    BLAST

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AC010328 Genomic DNA. No translation available.
    CH471135 Genomic DNA. Translation: EAW72110.1.
    BC000807 mRNA. Translation: AAH00807.1.
    BC094880 mRNA. Translation: AAH94880.1.
    AF277623 mRNA. Translation: AAK61306.1.
    AB046831 mRNA. Translation: BAB13437.1.
    AK024442 mRNA. Translation: BAB15732.1.
    X78928 mRNA. Translation: CAA55528.1. Sequence problems.
    CCDSiCCDS12859.1.
    PIRiS47066.
    RefSeqiNP_001096073.1. NM_001102603.1.
    NP_150630.2. NM_033288.3.
    NP_942596.1. NM_198893.2.
    XP_005259435.1. XM_005259378.2.
    XP_006723524.1. XM_006723461.1.
    XP_006723525.1. XM_006723462.1.
    UniGeneiHs.655967.

    Genome annotation databases

    EnsembliENST00000355147; ENSP00000347273; ENSG00000170949.
    ENST00000418871; ENSP00000409597; ENSG00000170949.
    ENST00000429604; ENSP00000406201; ENSG00000170949.
    ENST00000599056; ENSP00000470961; ENSG00000170949.
    GeneIDi90338.
    KEGGihsa:90338.
    UCSCiuc002qaq.4. human.

    Polymorphism databases

    DMDMi296453072.

    Keywords - Coding sequence diversityi

    Alternative splicing, Polymorphism

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AC010328 Genomic DNA. No translation available.
    CH471135 Genomic DNA. Translation: EAW72110.1 .
    BC000807 mRNA. Translation: AAH00807.1 .
    BC094880 mRNA. Translation: AAH94880.1 .
    AF277623 mRNA. Translation: AAK61306.1 .
    AB046831 mRNA. Translation: BAB13437.1 .
    AK024442 mRNA. Translation: BAB15732.1 .
    X78928 mRNA. Translation: CAA55528.1 . Sequence problems.
    CCDSi CCDS12859.1.
    PIRi S47066.
    RefSeqi NP_001096073.1. NM_001102603.1.
    NP_150630.2. NM_033288.3.
    NP_942596.1. NM_198893.2.
    XP_005259435.1. XM_005259378.2.
    XP_006723524.1. XM_006723461.1.
    XP_006723525.1. XM_006723462.1.
    UniGenei Hs.655967.

    3D structure databases

    ProteinModelPortali Q9HCG1.
    SMRi Q9HCG1. Positions 8-48, 214-818.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    BioGridi 124698. 3 interactions.
    IntActi Q9HCG1. 4 interactions.
    STRINGi 9606.ENSP00000270457.

    PTM databases

    PhosphoSitei Q9HCG1.

    Polymorphism databases

    DMDMi 296453072.

    Proteomic databases

    PaxDbi Q9HCG1.
    PRIDEi Q9HCG1.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    Ensembli ENST00000355147 ; ENSP00000347273 ; ENSG00000170949 .
    ENST00000418871 ; ENSP00000409597 ; ENSG00000170949 .
    ENST00000429604 ; ENSP00000406201 ; ENSG00000170949 .
    ENST00000599056 ; ENSP00000470961 ; ENSG00000170949 .
    GeneIDi 90338.
    KEGGi hsa:90338.
    UCSCi uc002qaq.4. human.

    Organism-specific databases

    CTDi 90338.
    GeneCardsi GC19M053569.
    HGNCi HGNC:12948. ZNF160.
    HPAi HPA023599.
    MIMi 600398. gene.
    neXtProti NX_Q9HCG1.
    PharmGKBi PA37531.
    HUGEi Search...
    GenAtlasi Search...

    Phylogenomic databases

    eggNOGi COG5048.
    HOGENOMi HOG000234617.
    HOVERGENi HBG018163.
    InParanoidi Q9HCG1.
    KOi K09228.
    OMAi QNENIAG.
    OrthoDBi EOG7KSX7Q.
    PhylomeDBi Q9HCG1.
    TreeFami TF341892.

    Enzyme and pathway databases

    Reactomei REACT_12627. Generic Transcription Pathway.

    Miscellaneous databases

    ChiTaRSi ZNF160. human.
    GeneWikii ZNF160.
    GenomeRNAii 90338.
    NextBioi 76679.
    PROi Q9HCG1.
    SOURCEi Search...

    Gene expression databases

    ArrayExpressi Q9HCG1.
    Bgeei Q9HCG1.
    CleanExi HS_ZNF160.
    Genevestigatori Q9HCG1.

    Family and domain databases

    Gene3Di 3.30.160.60. 20 hits.
    InterProi IPR001909. Krueppel-associated_box.
    IPR007087. Znf_C2H2.
    IPR015880. Znf_C2H2-like.
    IPR013087. Znf_C2H2/integrase_DNA-bd.
    [Graphical view ]
    Pfami PF01352. KRAB. 1 hit.
    [Graphical view ]
    SMARTi SM00349. KRAB. 1 hit.
    SM00355. ZnF_C2H2. 20 hits.
    [Graphical view ]
    SUPFAMi SSF109640. SSF109640. 1 hit.
    PROSITEi PS50805. KRAB. 1 hit.
    PS00028. ZINC_FINGER_C2H2_1. 20 hits.
    PS50157. ZINC_FINGER_C2H2_2. 20 hits.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "The DNA sequence and biology of human chromosome 19."
      Grimwood J., Gordon L.A., Olsen A.S., Terry A., Schmutz J., Lamerdin J.E., Hellsten U., Goodstein D., Couronne O., Tran-Gyamfi M., Aerts A., Altherr M., Ashworth L., Bajorek E., Black S., Branscomb E., Caenepeel S., Carrano A.V.
      , Caoile C., Chan Y.M., Christensen M., Cleland C.A., Copeland A., Dalin E., Dehal P., Denys M., Detter J.C., Escobar J., Flowers D., Fotopulos D., Garcia C., Georgescu A.M., Glavina T., Gomez M., Gonzales E., Groza M., Hammon N., Hawkins T., Haydu L., Ho I., Huang W., Israni S., Jett J., Kadner K., Kimball H., Kobayashi A., Larionov V., Leem S.-H., Lopez F., Lou Y., Lowry S., Malfatti S., Martinez D., McCready P.M., Medina C., Morgan J., Nelson K., Nolan M., Ovcharenko I., Pitluck S., Pollard M., Popkie A.P., Predki P., Quan G., Ramirez L., Rash S., Retterer J., Rodriguez A., Rogers S., Salamov A., Salazar A., She X., Smith D., Slezak T., Solovyev V., Thayer N., Tice H., Tsai M., Ustaszewska A., Vo N., Wagner M., Wheeler J., Wu K., Xie G., Yang J., Dubchak I., Furey T.S., DeJong P., Dickson M., Gordon D., Eichler E.E., Pennacchio L.A., Richardson P., Stubbs L., Rokhsar D.S., Myers R.M., Rubin E.M., Lucas S.M.
      Nature 428:529-535(2004) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    3. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
      The MGC Project Team
      Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORMS 1 AND 2).
      Tissue: Lymph and Placenta.
    4. "Molecular cloning and preliminary functional analysis of two novel human KRAB zinc finger proteins, HKr18 and HKr19."
      Mark C., Looman C., Abrink M., Hellman L.
      DNA Cell Biol. 20:275-286(2001) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [MRNA] OF 1-556 (ISOFORM 1), TISSUE SPECIFICITY, VARIANT ARG-82.
      Tissue: Testis.
    5. "Prediction of the coding sequences of unidentified human genes. XVIII. The complete sequences of 100 new cDNA clones from brain which code for large proteins in vitro."
      Nagase T., Kikuno R., Nakayama M., Hirosawa M., Ohara O.
      DNA Res. 7:273-281(2000) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 6-818 (ISOFORM 1), VARIANT ARG-82.
      Tissue: Brain.
    6. "Characterization of long cDNA clones from human adult spleen."
      Hattori A., Okumura K., Nagase T., Kikuno R., Hirosawa M., Ohara O.
      DNA Res. 7:357-366(2000) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 114-818 (ISOFORM 1).
      Tissue: Spleen.
    7. "Isolation of cDNA clones for 42 different Kruppel-related zinc finger proteins expressed in the human monoblast cell line U-937."
      Abrink M., Aveskogh M., Hellman L.
      DNA Cell Biol. 14:125-136(1995) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [MRNA] OF 685-818 (ISOFORM 1).

    Entry informationi

    Entry nameiZN160_HUMAN
    AccessioniPrimary (citable) accession number: Q9HCG1
    Secondary accession number(s): Q14589
    , Q504Q8, Q96JC5, Q9BVY9, Q9H7N6
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: February 21, 2002
    Last sequence update: May 18, 2010
    Last modified: October 1, 2014
    This is version 127 of the entry and version 3 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programChordata Protein Annotation Program
    DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteome

    Documents

    1. Human chromosome 19
      Human chromosome 19: entries, gene names and cross-references to MIM
    2. Human entries with polymorphisms or disease mutations
      List of human entries with polymorphisms or disease mutations
    3. Human polymorphisms and disease mutations
      Index of human polymorphisms and disease mutations
    4. MIM cross-references
      Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot
    5. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3