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Q9HBT7

- ZN287_HUMAN

UniProt

Q9HBT7 - ZN287_HUMAN

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Protein
Zinc finger protein 287
Gene
ZNF287, ZKSCAN13
Organism
Homo sapiens (Human)
Status
Reviewed - Annotation score: 3 out of 5 - Experimental evidence at transcript leveli

Functioni

May be involved in transcriptional regulation.

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Zinc fingeri361 – 38323C2H2-type 1
Add
BLAST
Zinc fingeri389 – 41123C2H2-type 2
Add
BLAST
Zinc fingeri417 – 43923C2H2-type 3
Add
BLAST
Zinc fingeri445 – 46723C2H2-type 4
Add
BLAST
Zinc fingeri473 – 49523C2H2-type 5
Add
BLAST
Zinc fingeri501 – 52323C2H2-type 6
Add
BLAST
Zinc fingeri529 – 55123C2H2-type 7
Add
BLAST
Zinc fingeri557 – 57923C2H2-type 8
Add
BLAST
Zinc fingeri585 – 60723C2H2-type 9
Add
BLAST
Zinc fingeri613 – 63523C2H2-type 10
Add
BLAST
Zinc fingeri641 – 66323C2H2-type 11
Add
BLAST
Zinc fingeri669 – 69123C2H2-type 12
Add
BLAST
Zinc fingeri697 – 71923C2H2-type 13
Add
BLAST
Zinc fingeri725 – 74723C2H2-type 14
Add
BLAST

GO - Molecular functioni

  1. DNA binding Source: UniProtKB-KW
  2. metal ion binding Source: UniProtKB-KW
  3. sequence-specific DNA binding transcription factor activity Source: InterPro
Complete GO annotation...

GO - Biological processi

  1. positive regulation of transcription, DNA-templated Source: Ensembl
  2. regulation of cytokine biosynthetic process Source: Ensembl
  3. transcription, DNA-templated Source: UniProtKB-KW
Complete GO annotation...

Keywords - Biological processi

Transcription, Transcription regulation

Keywords - Ligandi

DNA-binding, Metal-binding, Zinc

Enzyme and pathway databases

ReactomeiREACT_12627. Generic Transcription Pathway.

Names & Taxonomyi

Protein namesi
Recommended name:
Zinc finger protein 287
Alternative name(s):
Zinc finger protein with KRAB and SCAN domains 13
Gene namesi
Name:ZNF287
Synonyms:ZKSCAN13
OrganismiHomo sapiens (Human)
Taxonomic identifieri9606 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo
ProteomesiUP000005640: Chromosome 17

Organism-specific databases

HGNCiHGNC:13502. ZNF287.

Subcellular locationi

Nucleus Inferred

GO - Cellular componenti

  1. nucleus Source: UniProtKB-SubCell
Complete GO annotation...

Keywords - Cellular componenti

Nucleus

Pathology & Biotechi

Organism-specific databases

PharmGKBiPA37788.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 754754Zinc finger protein 287
PRO_0000047511Add
BLAST

Proteomic databases

PaxDbiQ9HBT7.
PRIDEiQ9HBT7.

PTM databases

PhosphoSiteiQ9HBT7.

Expressioni

Gene expression databases

ArrayExpressiQ9HBT7.
BgeeiQ9HBT7.
CleanExiHS_ZNF287.
GenevestigatoriQ9HBT7.

Organism-specific databases

HPAiHPA029290.

Interactioni

Protein-protein interaction databases

BioGridi121490. 2 interactions.
IntActiQ9HBT7. 1 interaction.

Structurei

3D structure databases

ProteinModelPortaliQ9HBT7.
SMRiQ9HBT7. Positions 37-125, 313-751.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini42 – 12483SCAN box
Add
BLAST
Domaini163 – 23169KRAB
Add
BLAST

Sequence similaritiesi

Contains 14 C2H2-type zinc fingers.
Contains 1 KRAB domain.
Contains 1 SCAN box domain.

Keywords - Domaini

Repeat, Zinc-finger

Phylogenomic databases

eggNOGiCOG5048.
HOGENOMiHOG000234617.
HOVERGENiHBG018163.
InParanoidiQ9HBT7.
KOiK09229.
OrthoDBiEOG7KSX7Q.
PhylomeDBiQ9HBT7.
TreeFamiTF350843.

Family and domain databases

Gene3Di3.30.160.60. 14 hits.
InterProiIPR001909. Krueppel-associated_box.
IPR008916. Retrov_capsid_C.
IPR003309. Tscrpt_reg_SCAN.
IPR007087. Znf_C2H2.
IPR015880. Znf_C2H2-like.
IPR013087. Znf_C2H2/integrase_DNA-bd.
[Graphical view]
PfamiPF01352. KRAB. 1 hit.
PF02023. SCAN. 1 hit.
PF00096. zf-C2H2. 1 hit.
[Graphical view]
SMARTiSM00349. KRAB. 1 hit.
SM00431. SCAN. 1 hit.
SM00355. ZnF_C2H2. 14 hits.
[Graphical view]
SUPFAMiSSF109640. SSF109640. 1 hit.
SSF47353. SSF47353. 1 hit.
PROSITEiPS50805. KRAB. 1 hit.
PS50804. SCAN_BOX. 1 hit.
PS00028. ZINC_FINGER_C2H2_1. 14 hits.
PS50157. ZINC_FINGER_C2H2_2. 14 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q9HBT7-1 [UniParc]FASTAAdd to Basket

« Hide

MNSSSRSQIL LRWKSDKAQS GPYNVEKEIL TSRFLRDTET CRQNFRNFPY    50
PDLAGPRKAL SQLRELCLKW LRPEIHSKEQ ILELLVLEQF LTILPGEVRT 100
WVKSQYPESS EEAVTLVEDL TQILEEEAPQ NSTLSQDTPE EDPRGKHAFQ 150
TGWLNDLVTK ESMTFKDVAV DITQEDWELM RPVQKELYKT VTLQNYWNMV 200
SLGLTVYRPT VIPILEEPWM VIKEILEGPS PEWETKAQAC TPVEDMSKLT 250
KEETHTIKLE DSYDYDDRLE RRGKGGFWKI HTDERGFSLK SVLSQEYDPT 300
EECLSKYDIY RNNFEKHSNL IVQFDTQLDN KTSVYNEGRA TFNHVSYGIV 350
HRKILPGEKP YKCNVCGKKF RKYPSLLKHQ STHAKEKSYE CEECGKEFRH 400
ISSLIAHQRM HTGEKPYECH QCGKAFSQRA HLTIHQRIHT GEKPYKCDDC 450
GKDFSQRAHL TIHQRTHTGE KPYKCLECGK TFSHSSSLIN HQRVHTGEKP 500
YICNECGKTF SQSTHLLQHQ KIHTGKKPYK CNECWKVFSQ STYLIRHQRI 550
HSGEKCYKCN ECGKAFAHSS TLIQHQTTHT GEKSYICNIC GKAFSQSANL 600
TQHHRTHTGE KPYKCSVCGK AFSQSVHLTQ HQRIHNGEKP FKCNICGKAY 650
RQGANLTQHQ RIHTGEKPYK CNECGKAFIY SSSLNQHQRT HTGERPYKCN 700
ECDKDFSQRT CLIQHQRIHT GEKPYACRIC GKTFTQSTNL IQHQRVHTGA 750
KHRN 754
Length:754
Mass (Da):87,565
Last modified:March 1, 2001 - v1
Checksum:iA1CCF1F5180601C5
GO

Natural variant

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Natural varianti274 – 2741K → T.
Corresponds to variant rs7224723 [ dbSNP | Ensembl ].
VAR_024207

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AF217227 mRNA. Translation: AAG09702.1.
CR457194 mRNA. Translation: CAG33475.1.
AC127540 Genomic DNA. No translation available.
BC101487 mRNA. Translation: AAI01488.1.
BC113363 mRNA. Translation: AAI13364.1.
RefSeqiNP_065704.2. NM_020653.2.
UniGeneiHs.99724.

Genome annotation databases

EnsembliENST00000395824; ENSP00000379168; ENSG00000141040.
ENST00000395825; ENSP00000379169; ENSG00000141040.
GeneIDi57336.
KEGGihsa:57336.
UCSCiuc002gqi.2. human.

Polymorphism databases

DMDMi20141038.

Keywords - Coding sequence diversityi

Polymorphism

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AF217227 mRNA. Translation: AAG09702.1 .
CR457194 mRNA. Translation: CAG33475.1 .
AC127540 Genomic DNA. No translation available.
BC101487 mRNA. Translation: AAI01488.1 .
BC113363 mRNA. Translation: AAI13364.1 .
RefSeqi NP_065704.2. NM_020653.2.
UniGenei Hs.99724.

3D structure databases

ProteinModelPortali Q9HBT7.
SMRi Q9HBT7. Positions 37-125, 313-751.
ModBasei Search...

Protein-protein interaction databases

BioGridi 121490. 2 interactions.
IntActi Q9HBT7. 1 interaction.

PTM databases

PhosphoSitei Q9HBT7.

Polymorphism databases

DMDMi 20141038.

Proteomic databases

PaxDbi Q9HBT7.
PRIDEi Q9HBT7.

Protocols and materials databases

DNASUi 57336.
Structural Biology Knowledgebase Search...

Genome annotation databases

Ensembli ENST00000395824 ; ENSP00000379168 ; ENSG00000141040 .
ENST00000395825 ; ENSP00000379169 ; ENSG00000141040 .
GeneIDi 57336.
KEGGi hsa:57336.
UCSCi uc002gqi.2. human.

Organism-specific databases

CTDi 57336.
GeneCardsi GC17M016453.
HGNCi HGNC:13502. ZNF287.
HPAi HPA029290.
neXtProti NX_Q9HBT7.
PharmGKBi PA37788.
GenAtlasi Search...

Phylogenomic databases

eggNOGi COG5048.
HOGENOMi HOG000234617.
HOVERGENi HBG018163.
InParanoidi Q9HBT7.
KOi K09229.
OrthoDBi EOG7KSX7Q.
PhylomeDBi Q9HBT7.
TreeFami TF350843.

Enzyme and pathway databases

Reactomei REACT_12627. Generic Transcription Pathway.

Miscellaneous databases

GenomeRNAii 57336.
NextBioi 63450.
PROi Q9HBT7.

Gene expression databases

ArrayExpressi Q9HBT7.
Bgeei Q9HBT7.
CleanExi HS_ZNF287.
Genevestigatori Q9HBT7.

Family and domain databases

Gene3Di 3.30.160.60. 14 hits.
InterProi IPR001909. Krueppel-associated_box.
IPR008916. Retrov_capsid_C.
IPR003309. Tscrpt_reg_SCAN.
IPR007087. Znf_C2H2.
IPR015880. Znf_C2H2-like.
IPR013087. Znf_C2H2/integrase_DNA-bd.
[Graphical view ]
Pfami PF01352. KRAB. 1 hit.
PF02023. SCAN. 1 hit.
PF00096. zf-C2H2. 1 hit.
[Graphical view ]
SMARTi SM00349. KRAB. 1 hit.
SM00431. SCAN. 1 hit.
SM00355. ZnF_C2H2. 14 hits.
[Graphical view ]
SUPFAMi SSF109640. SSF109640. 1 hit.
SSF47353. SSF47353. 1 hit.
PROSITEi PS50805. KRAB. 1 hit.
PS50804. SCAN_BOX. 1 hit.
PS00028. ZINC_FINGER_C2H2_1. 14 hits.
PS50157. ZINC_FINGER_C2H2_2. 14 hits.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "Deletion of a novel zinc finger gene in Smith-Magenis syndrome."
    Romero-Pastrana F., Srivastava A.K.
    Submitted (DEC-1999) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [MRNA].
  2. "Cloning of human full open reading frames in Gateway(TM) system entry vector (pDONR201)."
    Ebert L., Schick M., Neubert P., Schatten R., Henze S., Korn B.
    Submitted (JUN-2004) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
  3. "DNA sequence of human chromosome 17 and analysis of rearrangement in the human lineage."
    Zody M.C., Garber M., Adams D.J., Sharpe T., Harrow J., Lupski J.R., Nicholson C., Searle S.M., Wilming L., Young S.K., Abouelleil A., Allen N.R., Bi W., Bloom T., Borowsky M.L., Bugalter B.E., Butler J., Chang J.L.
    , Chen C.-K., Cook A., Corum B., Cuomo C.A., de Jong P.J., DeCaprio D., Dewar K., FitzGerald M., Gilbert J., Gibson R., Gnerre S., Goldstein S., Grafham D.V., Grocock R., Hafez N., Hagopian D.S., Hart E., Norman C.H., Humphray S., Jaffe D.B., Jones M., Kamal M., Khodiyar V.K., LaButti K., Laird G., Lehoczky J., Liu X., Lokyitsang T., Loveland J., Lui A., Macdonald P., Major J.E., Matthews L., Mauceli E., McCarroll S.A., Mihalev A.H., Mudge J., Nguyen C., Nicol R., O'Leary S.B., Osoegawa K., Schwartz D.C., Shaw-Smith C., Stankiewicz P., Steward C., Swarbreck D., Venkataraman V., Whittaker C.A., Yang X., Zimmer A.R., Bradley A., Hubbard T., Birren B.W., Rogers J., Lander E.S., Nusbaum C.
    Nature 440:1045-1049(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
  4. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
    The MGC Project Team
    Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Tissue: Brain.

Entry informationi

Entry nameiZN287_HUMAN
AccessioniPrimary (citable) accession number: Q9HBT7
Secondary accession number(s): Q6IAG1
Entry historyi
Integrated into UniProtKB/Swiss-Prot: January 23, 2002
Last sequence update: March 1, 2001
Last modified: September 3, 2014
This is version 117 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Human chromosome 17
    Human chromosome 17: entries, gene names and cross-references to MIM
  2. Human entries with polymorphisms or disease mutations
    List of human entries with polymorphisms or disease mutations
  3. Human polymorphisms and disease mutations
    Index of human polymorphisms and disease mutations
  4. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

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