ID MYG1_HUMAN Reviewed; 376 AA. AC Q9HB07; Q86UA3; DT 01-JUN-2001, integrated into UniProtKB/Swiss-Prot. DT 24-JAN-2024, sequence version 4. DT 27-MAR-2024, entry version 161. DE RecName: Full=MYG1 exonuclease {ECO:0000305}; DE EC=3.1.-.- {ECO:0000303|PubMed:31081026}; DE Flags: Precursor; GN Name=MYG1 {ECO:0000312|HGNC:HGNC:17590}; Synonyms=C12orf10; OS Homo sapiens (Human). OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; OC Homo. OX NCBI_TaxID=9606; RN [1] RP NUCLEOTIDE SEQUENCE [MRNA]. RA Smicun Y.; RT "The human homologue of MYG1 the highly conserved gene from autonomously RT proliferating mouse melanocytes."; RL Submitted (JUL-2000) to the EMBL/GenBank/DDBJ databases. RN [2] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=16541075; DOI=10.1038/nature04569; RA Scherer S.E., Muzny D.M., Buhay C.J., Chen R., Cree A., Ding Y., RA Dugan-Rocha S., Gill R., Gunaratne P., Harris R.A., Hawes A.C., RA Hernandez J., Hodgson A.V., Hume J., Jackson A., Khan Z.M., Kovar-Smith C., RA Lewis L.R., Lozado R.J., Metzker M.L., Milosavljevic A., Miner G.R., RA Montgomery K.T., Morgan M.B., Nazareth L.V., Scott G., Sodergren E., RA Song X.-Z., Steffen D., Lovering R.C., Wheeler D.A., Worley K.C., Yuan Y., RA Zhang Z., Adams C.Q., Ansari-Lari M.A., Ayele M., Brown M.J., Chen G., RA Chen Z., Clerc-Blankenburg K.P., Davis C., Delgado O., Dinh H.H., RA Draper H., Gonzalez-Garay M.L., Havlak P., Jackson L.R., Jacob L.S., RA Kelly S.H., Li L., Li Z., Liu J., Liu W., Lu J., Maheshwari M., RA Nguyen B.-V., Okwuonu G.O., Pasternak S., Perez L.M., Plopper F.J.H., RA Santibanez J., Shen H., Tabor P.E., Verduzco D., Waldron L., Wang Q., RA Williams G.A., Zhang J., Zhou J., Allen C.C., Amin A.G., Anyalebechi V., RA Bailey M., Barbaria J.A., Bimage K.E., Bryant N.P., Burch P.E., RA Burkett C.E., Burrell K.L., Calderon E., Cardenas V., Carter K., Casias K., RA Cavazos I., Cavazos S.R., Ceasar H., Chacko J., Chan S.N., Chavez D., RA Christopoulos C., Chu J., Cockrell R., Cox C.D., Dang M., Dathorne S.R., RA David R., Davis C.M., Davy-Carroll L., Deshazo D.R., Donlin J.E., RA D'Souza L., Eaves K.A., Egan A., Emery-Cohen A.J., Escotto M., Flagg N., RA Forbes L.D., Gabisi A.M., Garza M., Hamilton C., Henderson N., RA Hernandez O., Hines S., Hogues M.E., Huang M., Idlebird D.G., Johnson R., RA Jolivet A., Jones S., Kagan R., King L.M., Leal B., Lebow H., Lee S., RA LeVan J.M., Lewis L.C., London P., Lorensuhewa L.M., Loulseged H., RA Lovett D.A., Lucier A., Lucier R.L., Ma J., Madu R.C., Mapua P., RA Martindale A.D., Martinez E., Massey E., Mawhiney S., Meador M.G., RA Mendez S., Mercado C., Mercado I.C., Merritt C.E., Miner Z.L., Minja E., RA Mitchell T., Mohabbat F., Mohabbat K., Montgomery B., Moore N., Morris S., RA Munidasa M., Ngo R.N., Nguyen N.B., Nickerson E., Nwaokelemeh O.O., RA Nwokenkwo S., Obregon M., Oguh M., Oragunye N., Oviedo R.J., Parish B.J., RA Parker D.N., Parrish J., Parks K.L., Paul H.A., Payton B.A., Perez A., RA Perrin W., Pickens A., Primus E.L., Pu L.-L., Puazo M., Quiles M.M., RA Quiroz J.B., Rabata D., Reeves K., Ruiz S.J., Shao H., Sisson I., RA Sonaike T., Sorelle R.P., Sutton A.E., Svatek A.F., Svetz L.A., RA Tamerisa K.S., Taylor T.R., Teague B., Thomas N., Thorn R.D., Trejos Z.Y., RA Trevino B.K., Ukegbu O.N., Urban J.B., Vasquez L.I., Vera V.A., RA Villasana D.M., Wang L., Ward-Moore S., Warren J.T., Wei X., White F., RA Williamson A.L., Wleczyk R., Wooden H.S., Wooden S.H., Yen J., Yoon L., RA Yoon V., Zorrilla S.E., Nelson D., Kucherlapati R., Weinstock G., RA Gibbs R.A.; RT "The finished DNA sequence of human chromosome 12."; RL Nature 440:346-351(2006). RN [3] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RA Mural R.J., Istrail S., Sutton G.G., Florea L., Halpern A.L., Mobarry C.M., RA Lippert R., Walenz B., Shatkay H., Dew I., Miller J.R., Flanigan M.J., RA Edwards N.J., Bolanos R., Fasulo D., Halldorsson B.V., Hannenhalli S., RA Turner R., Yooseph S., Lu F., Nusskern D.R., Shue B.C., Zheng X.H., RA Zhong F., Delcher A.L., Huson D.H., Kravitz S.A., Mouchard L., Reinert K., RA Remington K.A., Clark A.G., Waterman M.S., Eichler E.E., Adams M.D., RA Hunkapiller M.W., Myers E.W., Venter J.C.; RL Submitted (JUL-2005) to the EMBL/GenBank/DDBJ databases. RN [4] {ECO:0000312|EMBL:AAH51871.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. RC TISSUE=Brain {ECO:0000312|EMBL:AAH51871.1}; RX PubMed=15489334; DOI=10.1101/gr.2596504; RG The MGC Project Team; RT "The status, quality, and expansion of the NIH full-length cDNA project: RT the Mammalian Gene Collection (MGC)."; RL Genome Res. 14:2121-2127(2004). RN [5] RP TISSUE SPECIFICITY, AND SUBCELLULAR LOCATION. RX PubMed=19014353; DOI=10.1042/bc20080086; RA Philips M.-A., Vikesaa J., Luuk H., Joenson L., Lillevaeli K., RA Rehfeld J.F., Vasar E., Koks S., Nielsen F.C.; RT "Characterization of MYG1 gene and protein: subcellular distribution and RT function."; RL Biol. Cell 101:361-373(2009). RN [6] RP ACETYLATION [LARGE SCALE ANALYSIS] AT LYS-267, AND IDENTIFICATION BY MASS RP SPECTROMETRY [LARGE SCALE ANALYSIS]. RX PubMed=19608861; DOI=10.1126/science.1175371; RA Choudhary C., Kumar C., Gnad F., Nielsen M.L., Rehman M., Walther T.C., RA Olsen J.V., Mann M.; RT "Lysine acetylation targets protein complexes and co-regulates major RT cellular functions."; RL Science 325:834-840(2009). RN [7] RP IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS]. RX PubMed=21269460; DOI=10.1186/1752-0509-5-17; RA Burkard T.R., Planyavsky M., Kaupe I., Breitwieser F.P., Buerckstuemmer T., RA Bennett K.L., Superti-Furga G., Colinge J.; RT "Initial characterization of the human central proteome."; RL BMC Syst. Biol. 5:17-17(2011). RN [8] RP PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-120, AND IDENTIFICATION BY RP MASS SPECTROMETRY [LARGE SCALE ANALYSIS]. RC TISSUE=Cervix carcinoma; RX PubMed=23186163; DOI=10.1021/pr300630k; RA Zhou H., Di Palma S., Preisinger C., Peng M., Polat A.N., Heck A.J., RA Mohammed S.; RT "Toward a comprehensive characterization of a human cancer cell RT phosphoproteome."; RL J. Proteome Res. 12:260-271(2013). RN [9] RP FUNCTION, MUTAGENESIS OF 106-ASP--HIS-108 AND HIS-344, AND INVOLVEMENT IN RP VITILIGO. RX PubMed=31081026; DOI=10.1093/nar/gkz371; RA Grover R., Burse S.A., Shankrit S., Aggarwal A., Kirty K., Narta K., RA Srivastav R., Ray A.K., Malik G., Vats A., Motiani R.K., Thukral L., RA Roy S.S., Bhattacharya S., Sharma R., Natarajan K., Mukerji M., Pandey R., RA Gokhale R.S., Natarajan V.T.; RT "Myg1 exonuclease couples the nuclear and mitochondrial translational RT programs through RNA processing."; RL Nucleic Acids Res. 47:5852-5866(2019). RN [10] RP INVOLVEMENT IN VITILIGO, VARIANT GLN-4, CHARACTERIZATION OF VARIANT GLN-4, RP AND SUBCELLULAR LOCATION. RX PubMed=20377893; DOI=10.1186/1471-2350-11-56; RA Philips M.A., Kingo K., Karelson M., Raetsep R., Aunin E., Reimann E., RA Reemann P., Porosaar O., Vikesaa J., Nielsen F.C., Vasar E., Silm H., RA Koks S.; RT "Promoter polymorphism -119C/G in MYG1 (C12orf10) gene is related to RT vitiligo susceptibility and Arg4Gln affects mitochondrial entrance of RT Myg1."; RL BMC Med. Genet. 11:56-56(2010). RN [11] RP INVOLVEMENT IN VITILIGO. RX PubMed=30051642; DOI=10.1111/jdv.15195; RA Traks T., Keermann M., Karelson M., Raetsep R., Reimann E., Silm H., RA Vasar E., Koks S., Kingo K.; RT "Polymorphisms in melanocortin system and MYG1 genes are associated with RT vitiligo."; RL J. Eur. Acad. Dermatol. Venereol. 33:e65-e67(2019). CC -!- FUNCTION: 3'-5' RNA exonuclease which cleaves in situ on specific CC transcripts in both nucleus and mitochondrion. Involved in regulating CC spatially segregated organellar RNA processing, acts as a coordinator CC of nucleo-mitochondrial crosstalk (PubMed:31081026). In nucleolus, CC processes pre-ribosomal RNA involved in ribosome assembly and alters CC cytoplasmic translation. In mitochondrial matrix, processes 3'-termini CC of the mito-ribosomal and messenger RNAs and controls translation of CC mitochondrial proteins (Probable). {ECO:0000269|PubMed:31081026, CC ECO:0000305|PubMed:31081026}. CC -!- INTERACTION: CC Q9HB07; Q6RW13: AGTRAP; NbExp=4; IntAct=EBI-709754, EBI-741181; CC Q9HB07; Q6RW13-2: AGTRAP; NbExp=3; IntAct=EBI-709754, EBI-11522760; CC Q9HB07; P49419-2: ALDH7A1; NbExp=3; IntAct=EBI-709754, EBI-11107920; CC Q9HB07; Q10567-3: AP1B1; NbExp=3; IntAct=EBI-709754, EBI-11978055; CC Q9HB07; Q6Q788: APOA5; NbExp=3; IntAct=EBI-709754, EBI-3936819; CC Q9HB07; Q15041: ARL6IP1; NbExp=6; IntAct=EBI-709754, EBI-714543; CC Q9HB07; Q8WZ55: BSND; NbExp=3; IntAct=EBI-709754, EBI-7996695; CC Q9HB07; Q9BSJ5: C17orf80; NbExp=3; IntAct=EBI-709754, EBI-2872520; CC Q9HB07; O95674: CDS2; NbExp=3; IntAct=EBI-709754, EBI-3913685; CC Q9HB07; Q96DZ9: CMTM5; NbExp=4; IntAct=EBI-709754, EBI-2548702; CC Q9HB07; Q96DZ9-2: CMTM5; NbExp=3; IntAct=EBI-709754, EBI-11522780; CC Q9HB07; Q6PUV4: CPLX2; NbExp=3; IntAct=EBI-709754, EBI-2689453; CC Q9HB07; Q9UHG0: DCDC2; NbExp=3; IntAct=EBI-709754, EBI-10303987; CC Q9HB07; Q96D03: DDIT4L; NbExp=3; IntAct=EBI-709754, EBI-742054; CC Q9HB07; Q9BSY9: DESI2; NbExp=3; IntAct=EBI-709754, EBI-12878374; CC Q9HB07; Q6ZPD8: DGAT2L6; NbExp=3; IntAct=EBI-709754, EBI-12831978; CC Q9HB07; P26641: EEF1G; NbExp=3; IntAct=EBI-709754, EBI-351467; CC Q9HB07; Q9Y282: ERGIC3; NbExp=3; IntAct=EBI-709754, EBI-781551; CC Q9HB07; Q8IZU0: FAM9B; NbExp=4; IntAct=EBI-709754, EBI-10175124; CC Q9HB07; Q8TAE8: GADD45GIP1; NbExp=3; IntAct=EBI-709754, EBI-372506; CC Q9HB07; P62993: GRB2; NbExp=3; IntAct=EBI-709754, EBI-401755; CC Q9HB07; Q86X24: HORMAD1; NbExp=3; IntAct=EBI-709754, EBI-12165207; CC Q9HB07; Q969L2: MAL2; NbExp=3; IntAct=EBI-709754, EBI-944295; CC Q9HB07; Q9NR34: MAN1C1; NbExp=3; IntAct=EBI-709754, EBI-7260764; CC Q9HB07; Q9H1A3: METTL9; NbExp=3; IntAct=EBI-709754, EBI-2804879; CC Q9HB07; Q9BRX2: PELO; NbExp=3; IntAct=EBI-709754, EBI-1043580; CC Q9HB07; O60664: PLIN3; NbExp=3; IntAct=EBI-709754, EBI-725795; CC Q9HB07; Q59EV6: PPGB; NbExp=3; IntAct=EBI-709754, EBI-14210385; CC Q9HB07; P57052: RBM11; NbExp=3; IntAct=EBI-709754, EBI-741332; CC Q9HB07; Q96HR9-2: REEP6; NbExp=3; IntAct=EBI-709754, EBI-14065960; CC Q9HB07; Q6NTF9-3: RHBDD2; NbExp=3; IntAct=EBI-709754, EBI-17589229; CC Q9HB07; Q03395: ROM1; NbExp=3; IntAct=EBI-709754, EBI-9395257; CC Q9HB07; P28702: RXRB; NbExp=3; IntAct=EBI-709754, EBI-748576; CC Q9HB07; Q8WV19: SFT2D1; NbExp=3; IntAct=EBI-709754, EBI-2854842; CC Q9HB07; Q9BYT1: SLC17A9; NbExp=3; IntAct=EBI-709754, EBI-3940816; CC Q9HB07; Q9NZD8: SPG21; NbExp=3; IntAct=EBI-709754, EBI-742688; CC Q9HB07; O43759-2: SYNGR1; NbExp=3; IntAct=EBI-709754, EBI-12187159; CC Q9HB07; P08247: SYP; NbExp=3; IntAct=EBI-709754, EBI-9071725; CC Q9HB07; O60830: TIMM17B; NbExp=3; IntAct=EBI-709754, EBI-2372529; CC Q9HB07; Q96MV1: TLCD4; NbExp=3; IntAct=EBI-709754, EBI-12947623; CC Q9HB07; Q8NBD8: TMEM229B; NbExp=3; IntAct=EBI-709754, EBI-12195227; CC Q9HB07; Q8WW34: TMEM239; NbExp=3; IntAct=EBI-709754, EBI-9675724; CC Q9HB07; Q9H2S6-2: TNMD; NbExp=3; IntAct=EBI-709754, EBI-12003398; CC Q9HB07; Q9NZC7-5: WWOX; NbExp=3; IntAct=EBI-709754, EBI-12040603; CC Q9HB07; O95070: YIF1A; NbExp=3; IntAct=EBI-709754, EBI-2799703; CC -!- SUBCELLULAR LOCATION: Nucleus, nucleoplasm CC {ECO:0000269|PubMed:19014353, ECO:0000269|PubMed:20377893}. CC Mitochondrion matrix {ECO:0000269|PubMed:19014353, CC ECO:0000269|PubMed:20377893}. Nucleus, nucleolus CC {ECO:0000250|UniProtKB:Q9JK81}. CC -!- TISSUE SPECIFICITY: Ubiquitously expressed, with highest levels in CC testis. {ECO:0000269|PubMed:19014353}. CC -!- DISEASE: Note=Several works have found that mRNA expression is elevated CC in the skin of vitiligo patients. {ECO:0000269|PubMed:20377893, CC ECO:0000269|PubMed:30051642, ECO:0000269|PubMed:31081026}. CC -!- SIMILARITY: Belongs to the MYG1 family. {ECO:0000305}. CC --------------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution (CC BY 4.0) License CC --------------------------------------------------------------------------- DR EMBL; AF289485; AAG17847.1; -; mRNA. DR EMBL; AC073611; -; NOT_ANNOTATED_CDS; Genomic_DNA. DR EMBL; CH471054; EAW96688.1; -; Genomic_DNA. DR EMBL; BC051871; AAH51871.1; -; mRNA. DR CCDS; CCDS31810.1; -. DR RefSeq; NP_067653.3; NM_021640.3. DR AlphaFoldDB; Q9HB07; -. DR IntAct; Q9HB07; 50. DR MINT; Q9HB07; -. DR STRING; 9606.ENSP00000267103; -. DR GlyGen; Q9HB07; 1 site, 1 O-linked glycan (1 site). DR iPTMnet; Q9HB07; -. DR MetOSite; Q9HB07; -. DR PhosphoSitePlus; Q9HB07; -. DR SwissPalm; Q9HB07; -. DR BioMuta; C12orf10; -. DR DMDM; 296439232; -. DR REPRODUCTION-2DPAGE; IPI00029444; -. DR EPD; Q9HB07; -. DR jPOST; Q9HB07; -. DR MassIVE; Q9HB07; -. DR MaxQB; Q9HB07; -. DR PaxDb; 9606-ENSP00000267103; -. DR PeptideAtlas; Q9HB07; -. DR ProteomicsDB; 81466; -. DR Pumba; Q9HB07; -. DR Antibodypedia; 48361; 46 antibodies from 12 providers. DR DNASU; 60314; -. DR Ensembl; ENST00000267103.10; ENSP00000267103.5; ENSG00000139637.14. DR Ensembl; ENST00000708949.1; ENSP00000517432.1; ENSG00000291835.1. DR GeneID; 60314; -. DR KEGG; hsa:60314; -. DR MANE-Select; ENST00000267103.10; ENSP00000267103.5; NM_021640.4; NP_067653.4. DR UCSC; uc001scp.5; human. DR AGR; HGNC:17590; -. DR CTD; 60314; -. DR GeneCards; MYG1; -. DR HGNC; HGNC:17590; MYG1. DR HPA; ENSG00000139637; Low tissue specificity. DR MIM; 611366; gene. DR neXtProt; NX_Q9HB07; -. DR VEuPathDB; HostDB:ENSG00000139637; -. DR eggNOG; KOG2948; Eukaryota. DR InParanoid; Q9HB07; -. DR OrthoDB; 19907at2759; -. DR PhylomeDB; Q9HB07; -. DR TreeFam; TF313313; -. DR PathwayCommons; Q9HB07; -. DR SignaLink; Q9HB07; -. DR BioGRID-ORCS; 60314; 45 hits in 1152 CRISPR screens. DR ChiTaRS; C12orf10; human. DR GenomeRNAi; 60314; -. DR Pharos; Q9HB07; Tbio. DR PRO; PR:Q9HB07; -. DR Proteomes; UP000005640; Chromosome 12. DR RNAct; Q9HB07; Protein. DR Bgee; ENSG00000139637; Expressed in primary visual cortex and 100 other cell types or tissues. DR ExpressionAtlas; Q9HB07; baseline and differential. DR GO; GO:0005737; C:cytoplasm; IBA:GO_Central. DR GO; GO:0005759; C:mitochondrial matrix; IEA:UniProtKB-SubCell. DR GO; GO:0005739; C:mitochondrion; IDA:UniProtKB. DR GO; GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell. DR GO; GO:0005654; C:nucleoplasm; IDA:HPA. DR GO; GO:0005634; C:nucleus; IDA:UniProtKB. DR GO; GO:0004518; F:nuclease activity; IEA:UniProtKB-KW. DR GO; GO:0035641; P:locomotory exploration behavior; IEA:Ensembl. DR InterPro; IPR003226; Met-dep_prot_hydro. DR PANTHER; PTHR11215; METAL DEPENDENT HYDROLASE - RELATED; 1. DR PANTHER; PTHR11215:SF1; MYG1 EXONUCLEASE; 1. DR Pfam; PF03690; UPF0160; 1. DR Genevisible; Q9HB07; HS. PE 1: Evidence at protein level; KW Acetylation; Hydrolase; Mitochondrion; Nuclease; Nucleus; Phosphoprotein; KW Reference proteome; Transit peptide. FT TRANSIT 1..47 FT /note="Mitochondrion" FT /evidence="ECO:0000255" FT CHAIN 48..376 FT /note="MYG1 exonuclease" FT /id="PRO_0000213483" FT MOD_RES 120 FT /note="Phosphoserine" FT /evidence="ECO:0007744|PubMed:23186163" FT MOD_RES 267 FT /note="N6-acetyllysine" FT /evidence="ECO:0007744|PubMed:19608861" FT MOD_RES 273 FT /note="N6-acetyllysine" FT /evidence="ECO:0000250|UniProtKB:Q9JK81" FT VARIANT 4 FT /note="R -> Q (loss of mitochondrial location; FT dbSNP:rs1534284)" FT /evidence="ECO:0000269|PubMed:20377893" FT /id="VAR_083553" FT VARIANT 349 FT /note="I -> T (in dbSNP:rs1534282)" FT /evidence="ECO:0000269|Ref.1" FT /id="VAR_059854" FT MUTAGEN 106..108 FT /note="DHH->AAL: Catalytically inactive." FT /evidence="ECO:0000269|PubMed:31081026" FT MUTAGEN 344 FT /note="H->Q: Loss of RNase activity and gained single FT stranded DNase activity." FT /evidence="ECO:0000269|PubMed:31081026" FT CONFLICT 150 FT /note="T -> P (in Ref. 1; AAG17847)" FT /evidence="ECO:0000305" FT CONFLICT 353 FT /note="R -> P (in Ref. 1; AAG17847)" FT /evidence="ECO:0000305" SQ SEQUENCE 376 AA; 42508 MW; 3D7151062EA70C06 CRC64; MGHRFLRGLL TLLLPPPPLY TRHRMLGPES VPPPKRSRSK LMAPPRIGTH NGTFHCDEAL ACALLRLLPE YRDAEIVRTR DPEKLASCDI VVDVGGEYDP RRHRYDHHQR SFTETMSSLS PGKPWQTKLS SAGLIYLHFG HKLLAQLLGT SEEDSMVGTL YDKMYENFVE EVDAVDNGIS QWAEGEPRYA LTTTLSARVA RLNPTWNHPD QDTEAGFKRA MDLVQEEFLQ RLDFYQHSWL PARALVEEAL AQRFQVDPSG EIVELAKGAC PWKEHLYHLE SGLSPPVAIF FVIYTDQAGQ WRIQCVPKEP HSFQSRLPLP EPWRGLRDEA LDQVSGIPGC IFVHASGFIG GHRTREGALS MARATLAQRS YLPQIS //