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Protein

PR domain zinc finger protein 16

Gene

PRDM16

Organism
Homo sapiens (Human)
Status
Reviewed-Annotation score: Annotation score: 5 out of 5-Experimental evidence at protein leveli

Functioni

Binds DNA and functions as a transcriptional regulator. Functions in the differentiation of brown adipose tissue (BAT) which is specialized in dissipating chemical energy in the form of heat in response to cold or excess feeding while white adipose tissue (WAT) is specialized in the storage of excess energy and the control of systemic metabolism. Together with CEBPB, regulates the differentiation of myoblastic precursors into brown adipose cells. Functions also as a repressor of TGF-beta signaling. Isoform 4 may regulate granulocytes differentiation.3 Publications

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Zinc fingeri230 – 25324C2H2-type 1; atypicalPROSITE-ProRule annotationAdd
BLAST
Zinc fingeri281 – 30323C2H2-type 2PROSITE-ProRule annotationAdd
BLAST
Zinc fingeri309 – 33123C2H2-type 3PROSITE-ProRule annotationAdd
BLAST
Zinc fingeri337 – 36024C2H2-type 4PROSITE-ProRule annotationAdd
BLAST
Zinc fingeri366 – 38823C2H2-type 5PROSITE-ProRule annotationAdd
BLAST
Zinc fingeri394 – 41623C2H2-type 6PROSITE-ProRule annotationAdd
BLAST
Zinc fingeri423 – 44523C2H2-type 7; atypicalPROSITE-ProRule annotationAdd
BLAST
Zinc fingeri951 – 97323C2H2-type 8PROSITE-ProRule annotationAdd
BLAST
Zinc fingeri979 – 100224C2H2-type 9PROSITE-ProRule annotationAdd
BLAST
Zinc fingeri1008 – 103225C2H2-type 10PROSITE-ProRule annotationAdd
BLAST

GO - Molecular functioni

  1. activating transcription factor binding Source: UniProtKB
  2. metal ion binding Source: UniProtKB-KW
  3. sequence-specific DNA binding Source: UniProtKB
  4. transcription coactivator activity Source: UniProtKB

GO - Biological processi

  1. brown fat cell differentiation Source: UniProtKB
  2. negative regulation of granulocyte differentiation Source: UniProtKB
  3. negative regulation of transcription, DNA-templated Source: UniProtKB
  4. negative regulation of transcription from RNA polymerase II promoter Source: UniProtKB
  5. negative regulation of transforming growth factor beta receptor signaling pathway Source: UniProtKB
  6. neurogenesis Source: Ensembl
  7. palate development Source: Ensembl
  8. positive regulation of transcription, DNA-templated Source: UniProtKB
  9. regulation of cellular respiration Source: UniProtKB
  10. somatic stem cell maintenance Source: Ensembl
  11. tongue development Source: Ensembl
  12. transcription, DNA-templated Source: UniProtKB-KW
  13. white fat cell differentiation Source: Ensembl
Complete GO annotation...

Keywords - Molecular functioni

Activator, Repressor

Keywords - Biological processi

Differentiation, Transcription, Transcription regulation

Keywords - Ligandi

DNA-binding, Metal-binding, Zinc

Names & Taxonomyi

Protein namesi
Recommended name:
PR domain zinc finger protein 16Curated
Alternative name(s):
PR domain-containing protein 16Curated
Transcription factor MEL1Curated
Short name:
MDS1/EVI1-like gene 11 Publication
Gene namesi
Name:PRDM16Imported
Synonyms:KIAA1675Imported, MEL11 Publication, PFM13
OrganismiHomo sapiens (Human)
Taxonomic identifieri9606 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo
ProteomesiUP000005640 Componenti: Chromosome 1

Organism-specific databases

HGNCiHGNC:14000. PRDM16.

Subcellular locationi

Nucleus 1 Publication

GO - Cellular componenti

  1. nucleus Source: UniProtKB
  2. transcriptional repressor complex Source: UniProtKB
Complete GO annotation...

Keywords - Cellular componenti

Nucleus

Pathology & Biotechi

Involvement in diseasei

Left ventricular non-compaction 8 (LVNC8)1 Publication

The disease is caused by mutations affecting the gene represented in this entry.

Disease descriptionA disease due to an arrest of myocardial morphogenesis. It is characterized by a hypertrophic left ventricle with deep trabeculations and with poor systolic function, with or without associated left ventricular dilation. In some cases, it is associated with other congenital heart anomalies.

See also OMIM:615373
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Natural varianti816 – 8161N → S in LVNC8. 1 Publication
VAR_070214
Cardiomyopathy, dilated 1LL (CMD1LL)1 Publication

The disease is caused by mutations affecting the gene represented in this entry.

Disease descriptionA disorder characterized by ventricular dilation and impaired systolic function, resulting in congestive heart failure and arrhythmia. Patients are at risk of premature death.

See also OMIM:615373
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Natural varianti271 – 2711E → K in CMD1LL. 1 Publication
VAR_070212
Natural varianti291 – 2911P → L in CMD1LL. 1 Publication
VAR_070213
Natural varianti887 – 8871L → P in CMD1LL. 1 Publication
VAR_070215
Natural varianti1101 – 11011V → M in CMD1LL. 1 Publication
VAR_070216

A chromosomal aberration involving PRDM16 is found in myelodysplastic syndrome (MDS) and acute myeloid leukemia (AML). Reciprocal translocation t(1;3)(p36;q21). Isoform 4 is specifically expressed in adult T-cell leukemia.

Keywords - Diseasei

Cardiomyopathy, Disease mutation

Organism-specific databases

MIMi615373. phenotype.
Orphaneti1606. 1p36 deletion syndrome.
154. Familial isolated dilated cardiomyopathy.
54260. Left ventricular noncompaction.
PharmGKBiPA33714.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 12761276PR domain zinc finger protein 16PRO_0000047773Add
BLAST

Proteomic databases

MaxQBiQ9HAZ2.
PaxDbiQ9HAZ2.
PRIDEiQ9HAZ2.

PTM databases

PhosphoSiteiQ9HAZ2.

Expressioni

Tissue specificityi

Expressed in uterus and kidney. Expressed in both cardiomyocytes and interstitial cells.3 Publications

Gene expression databases

BgeeiQ9HAZ2.
CleanExiHS_PRDM16.
ExpressionAtlasiQ9HAZ2. baseline and differential.
GenevestigatoriQ9HAZ2.

Interactioni

Subunit structurei

Interacts with CEBPA, CEBPB and CEBPD; the interaction is direct. Interacts with PPARG and PPARA; controls brown adipocytes differentiation. Interacts with CTBP1 and CTBP2; represses the expression of WAT-specific genes. Interacts with PPARGC1A and PPARGC1B; interaction with PPARGC1A or PPARGC1B activates the transcription of BAT-specific gene (By similarity). Interacts with HDAC1, SKI, SMAD2 and SMAD3; the interaction with SKI promotes the recruitment of SMAD3-HDAC1 complex on the promoter of TGF-beta target genes (PubMed:19049980). Interacts with ZNF516; the interaction is direct and may play a role in the transcription of brown adipose tissue-specific gene (PubMed:25578880).By similarity2 Publications

Binary interactionsi

WithEntry#Exp.IntActNotes
Ctbp2P565462EBI-4566658,EBI-1384883From a different organism.

Protein-protein interaction databases

BioGridi122023. 10 interactions.
IntActiQ9HAZ2. 2 interactions.
STRINGi9606.ENSP00000367651.

Structurei

3D structure databases

ProteinModelPortaliQ9HAZ2.
SMRiQ9HAZ2. Positions 74-208, 230-443, 947-1057.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini82 – 211130SETPROSITE-ProRule annotationAdd
BLAST

Region

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Regioni679 – 1038360Interaction with CTBP1, CTBP2 and ZNF516By similarityAdd
BLAST
Regioni739 – 1276538Mediates interaction with SKI and regulation of TGF-beta signaling1 PublicationAdd
BLAST

Compositional bias

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Compositional biasi459 – 55799Pro-richAdd
BLAST

Sequence similaritiesi

Contains 10 C2H2-type zinc fingers.PROSITE-ProRule annotation
Contains 1 SET domain.PROSITE-ProRule annotation

Zinc finger

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Zinc fingeri230 – 25324C2H2-type 1; atypicalPROSITE-ProRule annotationAdd
BLAST
Zinc fingeri281 – 30323C2H2-type 2PROSITE-ProRule annotationAdd
BLAST
Zinc fingeri309 – 33123C2H2-type 3PROSITE-ProRule annotationAdd
BLAST
Zinc fingeri337 – 36024C2H2-type 4PROSITE-ProRule annotationAdd
BLAST
Zinc fingeri366 – 38823C2H2-type 5PROSITE-ProRule annotationAdd
BLAST
Zinc fingeri394 – 41623C2H2-type 6PROSITE-ProRule annotationAdd
BLAST
Zinc fingeri423 – 44523C2H2-type 7; atypicalPROSITE-ProRule annotationAdd
BLAST
Zinc fingeri951 – 97323C2H2-type 8PROSITE-ProRule annotationAdd
BLAST
Zinc fingeri979 – 100224C2H2-type 9PROSITE-ProRule annotationAdd
BLAST
Zinc fingeri1008 – 103225C2H2-type 10PROSITE-ProRule annotationAdd
BLAST

Keywords - Domaini

Repeat, Zinc-finger

Phylogenomic databases

eggNOGiCOG5048.
GeneTreeiENSGT00530000063676.
HOVERGENiHBG005619.
InParanoidiQ9HAZ2.
OMAiNEYFPSR.
PhylomeDBiQ9HAZ2.
TreeFamiTF315309.

Family and domain databases

Gene3Di3.30.160.60. 8 hits.
InterProiIPR030413. Evi1/Prdm16.
IPR030414. PRDM16.
IPR001214. SET_dom.
IPR007087. Znf_C2H2.
IPR015880. Znf_C2H2-like.
IPR013087. Znf_C2H2/integrase_DNA-bd.
[Graphical view]
PANTHERiPTHR24393. PTHR24393. 1 hit.
PTHR24393:SF4. PTHR24393:SF4. 1 hit.
PfamiPF00096. zf-C2H2. 4 hits.
[Graphical view]
SMARTiSM00317. SET. 1 hit.
SM00355. ZnF_C2H2. 10 hits.
[Graphical view]
PROSITEiPS50280. SET. 1 hit.
PS00028. ZINC_FINGER_C2H2_1. 8 hits.
PS50157. ZINC_FINGER_C2H2_2. 10 hits.
[Graphical view]

Sequences (4)i

Sequence statusi: Complete.

This entry describes 4 isoformsi produced by alternative promoter usage and alternative splicing. AlignAdd to basket

Isoform 1 (identifier: Q9HAZ2-1) [UniParc]FASTAAdd to basket

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide

        10         20         30         40         50
MRSKARARKL AKSDGDVVNN MYEPNRDLLA SHSAEDEAED SAMSPIPVGP
60 70 80 90 100
PSPFPTSEDF TPKEGSPYEA PVYIPEDIPI PADFELRESS IPGAGLGVWA
110 120 130 140 150
KRKMEAGERL GPCVVVPRAA AKETDFGWEQ ILTDVEVSPQ EGCITKISED
160 170 180 190 200
LGSEKFCVDA NQAGAGSWLK YIRVACSCDD QNLTMCQISE QIYYKVIKDI
210 220 230 240 250
EPGEELLVHV KEGVYPLGTV PPGLDEEPTF RCDECDELFQ SKLDLRRHKK
260 270 280 290 300
YTCGSVGAAL YEGLAEELKP EGLGGGSGQA HECKDCERMF PNKYSLEQHM
310 320 330 340 350
VIHTEEREYK CDQCPKAFNW KSNLIRHQMS HDSGKRFECE NCVKVFTDPS
360 370 380 390 400
NLQRHIRSQH VGARAHACPD CGKTFATSSG LKQHKHIHST VKPFICEVCH
410 420 430 440 450
KSYTQFSNLC RHKRMHADCR TQIKCKDCGQ MFSTTSSLNK HRRFCEGKNH
460 470 480 490 500
YTPGGIFAPG LPLTPSPMMD KAKPSPSLNH ASLGFNEYFP SRPHPGSLPF
510 520 530 540 550
STAPPTFPAL TPGFPGIFPP SLYPRPPLLP PTSLLKSPLN HTQDAKLPSP
560 570 580 590 600
LGNPALPLVS AVSNSSQGTT AAAGPEEKFE SRLEDSCVEK LKTRSSDMSD
610 620 630 640 650
GSDFEDVNTT TGTDLDTTTG TGSDLDSDVD SDPDKDKGKG KSAEGQPKFG
660 670 680 690 700
GGLAPPGAPN SVAEVPVFYS QHSFFPPPDE QLLTATGAAG DSIKAIASIA
710 720 730 740 750
EKYFGPGFMG MQEKKLGSLP YHSAFPFQFL PNFPHSLYPF TDRALAHNLL
760 770 780 790 800
VKAEPKSPRD ALKVGGPSAE CPFDLTTKPK DVKPILPMPK GPSAPASGEE
810 820 830 840 850
QPLDLSIGSR ARASQNGGGR EPRKNHVYGE RKLGAGEGLP QVCPARMPQQ
860 870 880 890 900
PPLHYAKPSP FFMDPIYSRV EKRKVTDPVG ALKEKYLRPS PLLFHPQMSA
910 920 930 940 950
IETMTEKLES FAAMKADSGS SLQPLPHHPF NFRSPPPTLS DPILRKGKER
960 970 980 990 1000
YTCRYCGKIF PRSANLTRHL RTHTGEQPYR CKYCDRSFSI SSNLQRHVRN
1010 1020 1030 1040 1050
IHNKEKPFKC HLCNRCFGQQ TNLDRHLKKH EHENAPVSQH PGVLTNHLGT
1060 1070 1080 1090 1100
SASSPTSESD NHALLDEKED SYFSEIRNFI ANSEMNQAST RTEKRADMQI
1110 1120 1130 1140 1150
VDGSAQCPGL ASEKQEDVEE EDDDDLEEDD EDSLAGKSQD DTVSPAPEPQ
1160 1170 1180 1190 1200
AAYEDEEDEE PAASLAVGFD HTRRCAEDHE GGLLALEPMP TFGKGLDLRR
1210 1220 1230 1240 1250
AAEEAFEVKD VLNSTLDSEA LKHTLCRQAK NQAYAMMLSL SEDTPLHTPS
1260 1270
QGSLDAWLKV TGATSESGAF HPINHL
Length:1,276
Mass (Da):140,251
Last modified:September 21, 2009 - v3
Checksum:iAD16C5C0EE89A528
GO
Isoform 2 (identifier: Q9HAZ2-2) [UniParc]FASTAAdd to basket

Also known as: MEL1L

The sequence of this isoform differs from the canonical sequence as follows:
     1233-1251: Missing.

Note: No experimental confirmation available.

Show »
Length:1,257
Mass (Da):138,177
Checksum:i1CB045F5BBFE9D20
GO
Isoform 3 (identifier: Q9HAZ2-3) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     191-191: Q → QV
     868-868: Missing.

Note: No experimental confirmation available.

Show »
Length:1,276
Mass (Da):140,263
Checksum:iA5A073C5C5F26306
GO
Isoform 4 (identifier: Q9HAZ2-4) [UniParc]FASTAAdd to basket

Also known as: MEL1S

The sequence of this isoform differs from the canonical sequence as follows:
     1-184: Missing.

Note: Produced by alternative promoter usage.

Show »
Length:1,092
Mass (Da):120,338
Checksum:i7A24088D0A73B54F
GO

Sequence cautioni

The sequence BAB21766.2 differs from that shown. Reason: Erroneous initiation. Translation N-terminally shortened.Curated

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti50 – 523PPS → SPP in AAG33382 (Ref. 2) Curated
Sequence conflicti324 – 3241L → F in AAG33382 (Ref. 2) Curated
Sequence conflicti491 – 4911S → Y in AAG33382 (Ref. 2) Curated
Sequence conflicti1022 – 10221N → K in BAB84297 (PubMed:11050005).Curated

Natural variant

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Natural varianti271 – 2711E → K in CMD1LL. 1 Publication
VAR_070212
Natural varianti291 – 2911P → L in CMD1LL. 1 Publication
VAR_070213
Natural varianti533 – 5331S → P.3 Publications
Corresponds to variant rs870124 [ dbSNP | Ensembl ].
VAR_031433
Natural varianti633 – 6331P → L.
Corresponds to variant rs2493292 [ dbSNP | Ensembl ].
VAR_031434
Natural varianti816 – 8161N → S in LVNC8. 1 Publication
VAR_070214
Natural varianti887 – 8871L → P in CMD1LL. 1 Publication
VAR_070215
Natural varianti1101 – 11011V → M in CMD1LL. 1 Publication
VAR_070216

Alternative sequence

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Alternative sequencei1 – 184184Missing in isoform 4. CuratedVSP_038063Add
BLAST
Alternative sequencei191 – 1911Q → QV in isoform 3. 1 PublicationVSP_038064
Alternative sequencei868 – 8681Missing in isoform 3. 1 PublicationVSP_038065
Alternative sequencei1233 – 125119Missing in isoform 2. 1 PublicationVSP_006932Add
BLAST

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB078876 mRNA. Translation: BAB84297.1.
AF294278 mRNA. Translation: AAG33382.1.
AB051462 mRNA. Translation: BAB21766.2. Different initiation.
AL512383
, AL008733, AL354743, AL590438 Genomic DNA. Translation: CAH71132.1.
AL512383
, AL008733, AL354743, AL590438 Genomic DNA. Translation: CAH71133.1.
AL512383
, AL008733, AL354743, AL590438 Genomic DNA. Translation: CAH71134.1.
AL590438
, AL008733, AL354743, AL512383 Genomic DNA. Translation: CAH71529.1.
AL590438
, AL008733, AL354743, AL512383 Genomic DNA. Translation: CAH71530.1.
AL590438
, AL008733, AL354743, AL512383 Genomic DNA. Translation: CAH71531.1.
AL008733
, AL354743, AL512383, AL590438 Genomic DNA. Translation: CAI19629.1.
AL008733
, AL354743, AL512383, AL590438 Genomic DNA. Translation: CAI19630.1.
AL008733
, AL354743, AL512383, AL590438 Genomic DNA. Translation: CAI19631.1.
AL354743
, AL008733, AL512383, AL590438 Genomic DNA. Translation: CAI22788.1.
AL354743
, AL008733, AL512383, AL590438 Genomic DNA. Translation: CAI22789.1.
AL354743
, AL008733, AL512383, AL590438 Genomic DNA. Translation: CAI22790.1.
BC161614 mRNA. Translation: AAI61614.1.
CCDSiCCDS41236.2. [Q9HAZ2-1]
CCDS44048.2. [Q9HAZ2-2]
RefSeqiNP_071397.3. NM_022114.3. [Q9HAZ2-1]
NP_955533.2. NM_199454.2. [Q9HAZ2-2]
UniGeneiHs.99500.

Genome annotation databases

EnsembliENST00000270722; ENSP00000270722; ENSG00000142611. [Q9HAZ2-1]
ENST00000378391; ENSP00000367643; ENSG00000142611. [Q9HAZ2-2]
GeneIDi63976.
KEGGihsa:63976.
UCSCiuc001ake.3. human. [Q9HAZ2-2]
uc001akf.3. human. [Q9HAZ2-1]

Polymorphism databases

DMDMi259016328.

Keywords - Coding sequence diversityi

Alternative promoter usage, Alternative splicing, Chromosomal rearrangement, Polymorphism

Cross-referencesi

Web resourcesi

Atlas of Genetics and Cytogenetics in Oncology and Haematology

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB078876 mRNA. Translation: BAB84297.1.
AF294278 mRNA. Translation: AAG33382.1.
AB051462 mRNA. Translation: BAB21766.2. Different initiation.
AL512383
, AL008733, AL354743, AL590438 Genomic DNA. Translation: CAH71132.1.
AL512383
, AL008733, AL354743, AL590438 Genomic DNA. Translation: CAH71133.1.
AL512383
, AL008733, AL354743, AL590438 Genomic DNA. Translation: CAH71134.1.
AL590438
, AL008733, AL354743, AL512383 Genomic DNA. Translation: CAH71529.1.
AL590438
, AL008733, AL354743, AL512383 Genomic DNA. Translation: CAH71530.1.
AL590438
, AL008733, AL354743, AL512383 Genomic DNA. Translation: CAH71531.1.
AL008733
, AL354743, AL512383, AL590438 Genomic DNA. Translation: CAI19629.1.
AL008733
, AL354743, AL512383, AL590438 Genomic DNA. Translation: CAI19630.1.
AL008733
, AL354743, AL512383, AL590438 Genomic DNA. Translation: CAI19631.1.
AL354743
, AL008733, AL512383, AL590438 Genomic DNA. Translation: CAI22788.1.
AL354743
, AL008733, AL512383, AL590438 Genomic DNA. Translation: CAI22789.1.
AL354743
, AL008733, AL512383, AL590438 Genomic DNA. Translation: CAI22790.1.
BC161614 mRNA. Translation: AAI61614.1.
CCDSiCCDS41236.2. [Q9HAZ2-1]
CCDS44048.2. [Q9HAZ2-2]
RefSeqiNP_071397.3. NM_022114.3. [Q9HAZ2-1]
NP_955533.2. NM_199454.2. [Q9HAZ2-2]
UniGeneiHs.99500.

3D structure databases

ProteinModelPortaliQ9HAZ2.
SMRiQ9HAZ2. Positions 74-208, 230-443, 947-1057.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi122023. 10 interactions.
IntActiQ9HAZ2. 2 interactions.
STRINGi9606.ENSP00000367651.

PTM databases

PhosphoSiteiQ9HAZ2.

Polymorphism databases

DMDMi259016328.

Proteomic databases

MaxQBiQ9HAZ2.
PaxDbiQ9HAZ2.
PRIDEiQ9HAZ2.

Protocols and materials databases

DNASUi63976.
Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENST00000270722; ENSP00000270722; ENSG00000142611. [Q9HAZ2-1]
ENST00000378391; ENSP00000367643; ENSG00000142611. [Q9HAZ2-2]
GeneIDi63976.
KEGGihsa:63976.
UCSCiuc001ake.3. human. [Q9HAZ2-2]
uc001akf.3. human. [Q9HAZ2-1]

Organism-specific databases

CTDi63976.
GeneCardsiGC01P003008.
HGNCiHGNC:14000. PRDM16.
MIMi605557. gene.
615373. phenotype.
neXtProtiNX_Q9HAZ2.
Orphaneti1606. 1p36 deletion syndrome.
154. Familial isolated dilated cardiomyopathy.
54260. Left ventricular noncompaction.
PharmGKBiPA33714.
HUGEiSearch...
GenAtlasiSearch...

Phylogenomic databases

eggNOGiCOG5048.
GeneTreeiENSGT00530000063676.
HOVERGENiHBG005619.
InParanoidiQ9HAZ2.
OMAiNEYFPSR.
PhylomeDBiQ9HAZ2.
TreeFamiTF315309.

Miscellaneous databases

ChiTaRSiPRDM16. human.
GeneWikiiPRDM16.
GenomeRNAii63976.
NextBioi65776.
PROiQ9HAZ2.
SOURCEiSearch...

Gene expression databases

BgeeiQ9HAZ2.
CleanExiHS_PRDM16.
ExpressionAtlasiQ9HAZ2. baseline and differential.
GenevestigatoriQ9HAZ2.

Family and domain databases

Gene3Di3.30.160.60. 8 hits.
InterProiIPR030413. Evi1/Prdm16.
IPR030414. PRDM16.
IPR001214. SET_dom.
IPR007087. Znf_C2H2.
IPR015880. Znf_C2H2-like.
IPR013087. Znf_C2H2/integrase_DNA-bd.
[Graphical view]
PANTHERiPTHR24393. PTHR24393. 1 hit.
PTHR24393:SF4. PTHR24393:SF4. 1 hit.
PfamiPF00096. zf-C2H2. 4 hits.
[Graphical view]
SMARTiSM00317. SET. 1 hit.
SM00355. ZnF_C2H2. 10 hits.
[Graphical view]
PROSITEiPS50280. SET. 1 hit.
PS00028. ZINC_FINGER_C2H2_1. 8 hits.
PS50157. ZINC_FINGER_C2H2_2. 10 hits.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "A novel gene, MEL1, mapped to 1p36.3 is highly homologous to the MDS1/EVI1 gene and is transcriptionally activated in t(1;3)(p36;q21)-positive leukemia cells."
    Mochizuki N., Shimizu S., Nagasawa T., Tanaka H., Taniwaki M., Yokota J., Morishita K.
    Blood 96:3209-3214(1999) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 2), VARIANT PRO-533, CHROMOSOMAL TRANSLOCATION, DISEASE, TISSUE SPECIFICITY.
  2. "A family of novel PR-domain (PRDM) genes as candidate tumor suppressors."
    Fang W., Yang X.-H., Huang S.
    Submitted (JUL-2000) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 3).
  3. "Prediction of the coding sequences of unidentified human genes. XIX. The complete sequences of 100 new cDNA clones from brain which code for large proteins in vitro."
    Nagase T., Kikuno R., Hattori A., Kondo Y., Okumura K., Ohara O.
    DNA Res. 7:347-355(1999) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1), VARIANT PRO-533.
    Tissue: Brain.
  4. "Construction of expression-ready cDNA clones for KIAA genes: manual curation of 330 KIAA cDNA clones."
    Nakajima D., Okazaki N., Yamakawa H., Kikuno R., Ohara O., Nagase T.
    DNA Res. 9:99-106(2001) [PubMed] [Europe PMC] [Abstract]
    Cited for: SEQUENCE REVISION.
  5. "The DNA sequence and biological annotation of human chromosome 1."
    Gregory S.G., Barlow K.F., McLay K.E., Kaul R., Swarbreck D., Dunham A., Scott C.E., Howe K.L., Woodfine K., Spencer C.C.A., Jones M.C., Gillson C., Searle S., Zhou Y., Kokocinski F., McDonald L., Evans R., Phillips K.
    , Atkinson A., Cooper R., Jones C., Hall R.E., Andrews T.D., Lloyd C., Ainscough R., Almeida J.P., Ambrose K.D., Anderson F., Andrew R.W., Ashwell R.I.S., Aubin K., Babbage A.K., Bagguley C.L., Bailey J., Beasley H., Bethel G., Bird C.P., Bray-Allen S., Brown J.Y., Brown A.J., Buckley D., Burton J., Bye J., Carder C., Chapman J.C., Clark S.Y., Clarke G., Clee C., Cobley V., Collier R.E., Corby N., Coville G.J., Davies J., Deadman R., Dunn M., Earthrowl M., Ellington A.G., Errington H., Frankish A., Frankland J., French L., Garner P., Garnett J., Gay L., Ghori M.R.J., Gibson R., Gilby L.M., Gillett W., Glithero R.J., Grafham D.V., Griffiths C., Griffiths-Jones S., Grocock R., Hammond S., Harrison E.S.I., Hart E., Haugen E., Heath P.D., Holmes S., Holt K., Howden P.J., Hunt A.R., Hunt S.E., Hunter G., Isherwood J., James R., Johnson C., Johnson D., Joy A., Kay M., Kershaw J.K., Kibukawa M., Kimberley A.M., King A., Knights A.J., Lad H., Laird G., Lawlor S., Leongamornlert D.A., Lloyd D.M., Loveland J., Lovell J., Lush M.J., Lyne R., Martin S., Mashreghi-Mohammadi M., Matthews L., Matthews N.S.W., McLaren S., Milne S., Mistry S., Moore M.J.F., Nickerson T., O'Dell C.N., Oliver K., Palmeiri A., Palmer S.A., Parker A., Patel D., Pearce A.V., Peck A.I., Pelan S., Phelps K., Phillimore B.J., Plumb R., Rajan J., Raymond C., Rouse G., Saenphimmachak C., Sehra H.K., Sheridan E., Shownkeen R., Sims S., Skuce C.D., Smith M., Steward C., Subramanian S., Sycamore N., Tracey A., Tromans A., Van Helmond Z., Wall M., Wallis J.M., White S., Whitehead S.L., Wilkinson J.E., Willey D.L., Williams H., Wilming L., Wray P.W., Wu Z., Coulson A., Vaudin M., Sulston J.E., Durbin R.M., Hubbard T., Wooster R., Dunham I., Carter N.P., McVean G., Ross M.T., Harrow J., Olson M.V., Beck S., Rogers J., Bentley D.R.
    Nature 441:315-321(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
  6. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
    The MGC Project Team
    Genome Res. 14:2121-2127(2003) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1), VARIANT PRO-533.
  7. "A novel EVI1 gene family, MEL1, lacking a PR domain (MEL1S) is expressed mainly in t(1;3)(p36;q21)-positive AML and blocks G-CSF-induced myeloid differentiation."
    Nishikata I., Sasaki H., Iga M., Tateno Y., Imayoshi S., Asou N., Nakamura T., Morishita K.
    Blood 102:3323-3332(2002) [PubMed] [Europe PMC] [Abstract]
    Cited for: FUNCTION, ALTERNATIVE SPLICING (ISOFORMS 2 AND 4), TISSUE SPECIFICITY.
    Tissue: Placenta.
  8. "Breakpoints at 1p36.3 in three MDS/AML(M4) patients with t(1;3)(p36;q21) occur in the first intron and in the 5' region of MEL1."
    Xinh P.T., Tri N.K., Nagao H., Nakazato H., Taketazu F., Fujisawa S., Yagasaki F., Chen Y.Z., Hayashi Y., Toyoda A., Hattori M., Sakaki Y., Tokunaga K., Sato Y.
    Genes Chromosomes Cancer 36:313-316(2002) [PubMed] [Europe PMC] [Abstract]
    Cited for: CHROMOSOMAL TRANSLOCATION, DISEASE.
  9. "Aberrant expression of the MEL1S gene identified in association with hypomethylation in adult T-cell leukemia cells."
    Yoshida M., Nosaka K., Yasunaga J., Nishikata I., Morishita K., Matsuoka M.
    Blood 103:2753-2760(2003) [PubMed] [Europe PMC] [Abstract]
    Cited for: FUNCTION, ALTERNATIVE SPLICING (ISOFORM 4), DISEASE.
  10. Cited for: FUNCTION, SUBCELLULAR LOCATION, INTERACTION WITH HDAC1; SKI; SMAD2 AND SMAD3, REGION.
  11. "Cold-inducible Zfp516 activates UCP1 transcription to promote browning of white fat and development of brown fat."
    Dempersmier J., Sambeat A., Gulyaeva O., Paul S.M., Hudak C.S., Raposo H.F., Kwan H.Y., Kang C., Wong R.H., Sul H.S.
    Mol. Cell 57:235-246(2014) [PubMed] [Europe PMC] [Abstract]
    Cited for: INTERACTION WITH ZNF516.
  12. Cited for: VARIANT LVNC8 SER-816, VARIANTS CMD1LL LYS-271; LEU-291; PRO-887 AND MET-1101, TISSUE SPECIFICITY.

Entry informationi

Entry nameiPRD16_HUMAN
AccessioniPrimary (citable) accession number: Q9HAZ2
Secondary accession number(s): A6NHQ8
, B1AJP7, B1AJP8, B1AJP9, B1WB48, Q8WYJ9, Q9C0I8
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 15, 2001
Last sequence update: September 21, 2009
Last modified: March 31, 2015
This is version 137 of the entry and version 3 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Human chromosome 1
    Human chromosome 1: entries, gene names and cross-references to MIM
  2. Human entries with polymorphisms or disease mutations
    List of human entries with polymorphisms or disease mutations
  3. Human polymorphisms and disease mutations
    Index of human polymorphisms and disease mutations
  4. MIM cross-references
    Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot
  5. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.