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Protein

Transcription factor COE2

Gene

EBF2

Organism
Homo sapiens (Human)
Status
Reviewed-Annotation score: Annotation score: 4 out of 5-Experimental evidence at transcript leveli

Functioni

Transcription factor that, in osteoblasts, activates the decoy receptor for RANKL, TNFRSF11B, which in turn regulates osteoclast differentiation. Acts in synergy with the Wnt-responsive LEF1/CTNNB1 pathway. Recognizes variations of the palindromic sequence 5'-ATTCCCNNGGGAATT-3' (By similarity).By similarity

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Zinc fingeri150 – 16920C5-typeSequence analysisAdd
BLAST

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Activator, Developmental protein

Keywords - Biological processi

Transcription, Transcription regulation

Keywords - Ligandi

DNA-binding, Metal-binding, Zinc

Names & Taxonomyi

Protein namesi
Recommended name:
Transcription factor COE2
Alternative name(s):
Early B-cell factor 2
Short name:
EBF-2
Gene namesi
Name:EBF2
Synonyms:COE2
OrganismiHomo sapiens (Human)
Taxonomic identifieri9606 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo
Proteomesi
  • UP000005640 Componenti: Chromosome 8

Organism-specific databases

HGNCiHGNC:19090. EBF2.

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Nucleus

Pathology & Biotechi

Organism-specific databases

PharmGKBiPA38794.

Polymorphism and mutation databases

BioMutaiEBF2.
DMDMi119370337.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 575575Transcription factor COE2PRO_0000107828Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Modified residuei1 – 11N-acetylmethionineBy similarity
Cross-linki15 – 15Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO1)By similarity
Cross-linki15 – 15Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2)By similarity

Keywords - PTMi

Acetylation, Isopeptide bond, Ubl conjugation

Proteomic databases

EPDiQ9HAK2.
MaxQBiQ9HAK2.
PaxDbiQ9HAK2.
PeptideAtlasiQ9HAK2.
PRIDEiQ9HAK2.

PTM databases

iPTMnetiQ9HAK2.
PhosphoSiteiQ9HAK2.
SwissPalmiQ9HAK2.

Expressioni

Gene expression databases

BgeeiQ9HAK2.
CleanExiHS_EBF2.
ExpressionAtlasiQ9HAK2. baseline and differential.
GenevisibleiQ9HAK2. HS.

Organism-specific databases

HPAiCAB037026.

Interactioni

Subunit structurei

Forms either a homodimer or a heterodimer with a related family member.By similarity

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sitei162 – 1621Interaction with DNABy similarity
Sitei171 – 1711Interaction with DNABy similarity

Protein-protein interaction databases

BioGridi122221. 1 interaction.
STRINGi9606.ENSP00000430241.

Structurei

3D structure databases

ProteinModelPortaliQ9HAK2.
SMRiQ9HAK2. Positions 35-384.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini253 – 33684IPT/TIGAdd
BLAST

Region

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Regioni62 – 654Interaction with DNABy similarity
Regioni196 – 2038Interaction with DNABy similarity
Regioni235 – 2384Interaction with DNABy similarity

Compositional bias

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Compositional biasi453 – 53482Pro/Ser/Thr-richAdd
BLAST

Sequence similaritiesi

Belongs to the COE family.Curated
Contains 1 IPT/TIG domain.Curated

Zinc finger

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Zinc fingeri150 – 16920C5-typeSequence analysisAdd
BLAST

Keywords - Domaini

Zinc-finger

Phylogenomic databases

eggNOGiKOG3836. Eukaryota.
ENOG410XQ9Z. LUCA.
GeneTreeiENSGT00390000014051.
HOGENOMiHOG000092311.
HOVERGENiHBG005108.
InParanoidiQ9HAK2.
KOiK09103.
OMAiSMMGINS.
OrthoDBiEOG7J446V.
PhylomeDBiQ9HAK2.
TreeFamiTF313391.

Family and domain databases

Gene3Di2.60.40.10. 1 hit.
InterProiIPR032200. COE_DBD.
IPR032201. COE_HLH.
IPR013783. Ig-like_fold.
IPR014756. Ig_E-set.
IPR002909. IPT.
IPR003523. Transcription_factor_COE.
IPR018350. Transcription_factor_COE_CS.
[Graphical view]
PANTHERiPTHR10747. PTHR10747. 1 hit.
PfamiPF16422. COE1_DBD. 1 hit.
PF16423. COE1_HLH. 1 hit.
PF01833. TIG. 1 hit.
[Graphical view]
SMARTiSM00429. IPT. 1 hit.
[Graphical view]
SUPFAMiSSF81296. SSF81296. 1 hit.
PROSITEiPS01345. COE. 1 hit.
[Graphical view]

Sequences (2)i

Sequence statusi: Complete.

This entry describes 2 isoformsi produced by alternative splicing. AlignAdd to basket

Isoform 1 (identifier: Q9HAK2-1) [UniParc]FASTAAdd to basket

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide

        10         20         30         40         50
MFGIQDTLGR GPTLKEKSLG AEMDSVRSWV RNVGVVDANV AAQSGVALSR
60 70 80 90 100
AHFEKQPPSN LRKSNFFHFV LALYDRQGQP VEIERTAFVD FVENDKEQGN
110 120 130 140 150
EKTNNGTHYK LQLLYSNGVR TEQDLYVRLI DSVTKQPIAY EGQNKNPEMC
160 170 180 190 200
RVLLTHEVMC SRCCEKKSCG NRNETPSDPV IIDRFFLKFF LKCNQNCLKT
210 220 230 240 250
AGNPRDMRRF QVVLSTTVNV DGHVLAVSDN MFVHNNSKHG RRARRLDPSE
260 270 280 290 300
ATPCIKAISP SEGWTTGGAM VIIIGDNFFD GLQVVFGTML VWSELITPHA
310 320 330 340 350
IRVQTPPRHI PGVVEVTLSY KSKQFCKGAP GRFIYTALNE PTIDYGFQRL
360 370 380 390 400
QKVIPRHPGD PERLAKEMLL KRAADLVEAL YGTPHNNQDI ILKRAADIAE
410 420 430 440 450
ALYSVPRNPS QLPALSSSPA HSGMMGINSY GSQLGVSISE STQGNNQGYI
460 470 480 490 500
RNTSSISPRG YSSSSTPQQS NYSTSSNSMN GYSNVPMANL GVPGSPGFLN
510 520 530 540 550
GSPTGSPYGI MSSSPTVGSS STSSILPFSS SVFPAVKQKS AFAPVIRPQG
560 570
SPSPACSSGN GNGFRAMTGL VVPPM
Length:575
Mass (Da):62,650
Last modified:December 12, 2006 - v4
Checksum:i05FCDBC9CB81EC89
GO
Isoform 2 (identifier: Q9HAK2-2) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     1-269: Missing.
     510-575: IMSSSPTVGS...AMTGLVVPPM → TGLWLTWLLKAFWGKKRIETIPFL

Show »
Length:264
Mass (Da):28,748
Checksum:i7B5424D298D36159
GO

Sequence cautioni

The sequence BAB13843.1 differs from that shown. Reason: Erroneous initiation. Curated

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti483 – 4831S → G in AAU10086 (Ref. 1) Curated
Sequence conflicti513 – 5131S → L in BAB13843 (PubMed:14702039).Curated

Natural variant

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Natural varianti559 – 5591G → S.
Corresponds to variant rs17054477 [ dbSNP | Ensembl ].
VAR_048754

Alternative sequence

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Alternative sequencei1 – 269269Missing in isoform 2. 1 PublicationVSP_055530Add
BLAST
Alternative sequencei510 – 57566IMSSS…VVPPM → TGLWLTWLLKAFWGKKRIET IPFL in isoform 2. 1 PublicationVSP_055531Add
BLAST

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AY700779 mRNA. Translation: AAU10086.1.
AC023566 Genomic DNA. No translation available.
AC090103 Genomic DNA. No translation available.
AK021562 mRNA. Translation: BAB13843.1. Different initiation.
BC069665 mRNA. Translation: AAH69665.1.
BC069726 mRNA. Translation: AAH69726.1.
BC069747 mRNA. Translation: AAH69747.1.
BC069768 mRNA. Translation: AAH69768.1.
BC074794 mRNA. Translation: AAH74794.2.
BC113478 mRNA. Translation: AAI13479.1.
BC113504 mRNA. Translation: AAI13505.1.
CCDSiCCDS43726.1. [Q9HAK2-1]
RefSeqiNP_073150.2. NM_022659.3. [Q9HAK2-1]
UniGeneiHs.491292.

Genome annotation databases

EnsembliENST00000520164; ENSP00000430241; ENSG00000221818. [Q9HAK2-1]
ENST00000535548; ENSP00000437909; ENSG00000221818. [Q9HAK2-2]
GeneIDi64641.
KEGGihsa:64641.
UCSCiuc003xes.3. human. [Q9HAK2-1]

Keywords - Coding sequence diversityi

Alternative splicing, Polymorphism

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AY700779 mRNA. Translation: AAU10086.1.
AC023566 Genomic DNA. No translation available.
AC090103 Genomic DNA. No translation available.
AK021562 mRNA. Translation: BAB13843.1. Different initiation.
BC069665 mRNA. Translation: AAH69665.1.
BC069726 mRNA. Translation: AAH69726.1.
BC069747 mRNA. Translation: AAH69747.1.
BC069768 mRNA. Translation: AAH69768.1.
BC074794 mRNA. Translation: AAH74794.2.
BC113478 mRNA. Translation: AAI13479.1.
BC113504 mRNA. Translation: AAI13505.1.
CCDSiCCDS43726.1. [Q9HAK2-1]
RefSeqiNP_073150.2. NM_022659.3. [Q9HAK2-1]
UniGeneiHs.491292.

3D structure databases

ProteinModelPortaliQ9HAK2.
SMRiQ9HAK2. Positions 35-384.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi122221. 1 interaction.
STRINGi9606.ENSP00000430241.

PTM databases

iPTMnetiQ9HAK2.
PhosphoSiteiQ9HAK2.
SwissPalmiQ9HAK2.

Polymorphism and mutation databases

BioMutaiEBF2.
DMDMi119370337.

Proteomic databases

EPDiQ9HAK2.
MaxQBiQ9HAK2.
PaxDbiQ9HAK2.
PeptideAtlasiQ9HAK2.
PRIDEiQ9HAK2.

Protocols and materials databases

DNASUi64641.
Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENST00000520164; ENSP00000430241; ENSG00000221818. [Q9HAK2-1]
ENST00000535548; ENSP00000437909; ENSG00000221818. [Q9HAK2-2]
GeneIDi64641.
KEGGihsa:64641.
UCSCiuc003xes.3. human. [Q9HAK2-1]

Organism-specific databases

CTDi64641.
GeneCardsiEBF2.
HGNCiHGNC:19090. EBF2.
HPAiCAB037026.
MIMi609934. gene.
neXtProtiNX_Q9HAK2.
PharmGKBiPA38794.
GenAtlasiSearch...

Phylogenomic databases

eggNOGiKOG3836. Eukaryota.
ENOG410XQ9Z. LUCA.
GeneTreeiENSGT00390000014051.
HOGENOMiHOG000092311.
HOVERGENiHBG005108.
InParanoidiQ9HAK2.
KOiK09103.
OMAiSMMGINS.
OrthoDBiEOG7J446V.
PhylomeDBiQ9HAK2.
TreeFamiTF313391.

Miscellaneous databases

GenomeRNAii64641.
PROiQ9HAK2.
SOURCEiSearch...

Gene expression databases

BgeeiQ9HAK2.
CleanExiHS_EBF2.
ExpressionAtlasiQ9HAK2. baseline and differential.
GenevisibleiQ9HAK2. HS.

Family and domain databases

Gene3Di2.60.40.10. 1 hit.
InterProiIPR032200. COE_DBD.
IPR032201. COE_HLH.
IPR013783. Ig-like_fold.
IPR014756. Ig_E-set.
IPR002909. IPT.
IPR003523. Transcription_factor_COE.
IPR018350. Transcription_factor_COE_CS.
[Graphical view]
PANTHERiPTHR10747. PTHR10747. 1 hit.
PfamiPF16422. COE1_DBD. 1 hit.
PF16423. COE1_HLH. 1 hit.
PF01833. TIG. 1 hit.
[Graphical view]
SMARTiSM00429. IPT. 1 hit.
[Graphical view]
SUPFAMiSSF81296. SSF81296. 1 hit.
PROSITEiPS01345. COE. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. Li H., Shen C., Zhou G., Ke R., Zhong G., Lin L., Yang S.
    Submitted (JUL-2004) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 2).
  2. "DNA sequence and analysis of human chromosome 8."
    Nusbaum C., Mikkelsen T.S., Zody M.C., Asakawa S., Taudien S., Garber M., Kodira C.D., Schueler M.G., Shimizu A., Whittaker C.A., Chang J.L., Cuomo C.A., Dewar K., FitzGerald M.G., Yang X., Allen N.R., Anderson S., Asakawa T.
    , Blechschmidt K., Bloom T., Borowsky M.L., Butler J., Cook A., Corum B., DeArellano K., DeCaprio D., Dooley K.T., Dorris L. III, Engels R., Gloeckner G., Hafez N., Hagopian D.S., Hall J.L., Ishikawa S.K., Jaffe D.B., Kamat A., Kudoh J., Lehmann R., Lokitsang T., Macdonald P., Major J.E., Matthews C.D., Mauceli E., Menzel U., Mihalev A.H., Minoshima S., Murayama Y., Naylor J.W., Nicol R., Nguyen C., O'Leary S.B., O'Neill K., Parker S.C.J., Polley A., Raymond C.K., Reichwald K., Rodriguez J., Sasaki T., Schilhabel M., Siddiqui R., Smith C.L., Sneddon T.P., Talamas J.A., Tenzin P., Topham K., Venkataraman V., Wen G., Yamazaki S., Young S.K., Zeng Q., Zimmer A.R., Rosenthal A., Birren B.W., Platzer M., Shimizu N., Lander E.S.
    Nature 439:331-335(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
  3. "Complete sequencing and characterization of 21,243 full-length human cDNAs."
    Ota T., Suzuki Y., Nishikawa T., Otsuki T., Sugiyama T., Irie R., Wakamatsu A., Hayashi K., Sato H., Nagai K., Kimura K., Makita H., Sekine M., Obayashi M., Nishi T., Shibahara T., Tanaka T., Ishii S.
    , Yamamoto J., Saito K., Kawai Y., Isono Y., Nakamura Y., Nagahari K., Murakami K., Yasuda T., Iwayanagi T., Wagatsuma M., Shiratori A., Sudo H., Hosoiri T., Kaku Y., Kodaira H., Kondo H., Sugawara M., Takahashi M., Kanda K., Yokoi T., Furuya T., Kikkawa E., Omura Y., Abe K., Kamihara K., Katsuta N., Sato K., Tanikawa M., Yamazaki M., Ninomiya K., Ishibashi T., Yamashita H., Murakawa K., Fujimori K., Tanai H., Kimata M., Watanabe M., Hiraoka S., Chiba Y., Ishida S., Ono Y., Takiguchi S., Watanabe S., Yosida M., Hotuta T., Kusano J., Kanehori K., Takahashi-Fujii A., Hara H., Tanase T.-O., Nomura Y., Togiya S., Komai F., Hara R., Takeuchi K., Arita M., Imose N., Musashino K., Yuuki H., Oshima A., Sasaki N., Aotsuka S., Yoshikawa Y., Matsunawa H., Ichihara T., Shiohata N., Sano S., Moriya S., Momiyama H., Satoh N., Takami S., Terashima Y., Suzuki O., Nakagawa S., Senoh A., Mizoguchi H., Goto Y., Shimizu F., Wakebe H., Hishigaki H., Watanabe T., Sugiyama A., Takemoto M., Kawakami B., Yamazaki M., Watanabe K., Kumagai A., Itakura S., Fukuzumi Y., Fujimori Y., Komiyama M., Tashiro H., Tanigami A., Fujiwara T., Ono T., Yamada K., Fujii Y., Ozaki K., Hirao M., Ohmori Y., Kawabata A., Hikiji T., Kobatake N., Inagaki H., Ikema Y., Okamoto S., Okitani R., Kawakami T., Noguchi S., Itoh T., Shigeta K., Senba T., Matsumura K., Nakajima Y., Mizuno T., Morinaga M., Sasaki M., Togashi T., Oyama M., Hata H., Watanabe M., Komatsu T., Mizushima-Sugano J., Satoh T., Shirai Y., Takahashi Y., Nakagawa K., Okumura K., Nagase T., Nomura N., Kikuchi H., Masuho Y., Yamashita R., Nakai K., Yada T., Nakamura Y., Ohara O., Isogai T., Sugano S.
    Nat. Genet. 36:40-45(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 233-575 (ISOFORM 1).
    Tissue: Embryo.
  4. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
    The MGC Project Team
    Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 240-575 (ISOFORM 1).
    Tissue: Brain and Fetal brain.

Entry informationi

Entry nameiCOE2_HUMAN
AccessioniPrimary (citable) accession number: Q9HAK2
Secondary accession number(s): A0PJM4
, A6NMF7, F5H645, Q66VZ3, Q6DK36, Q6IS86, Q6ISA4
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 28, 2002
Last sequence update: December 12, 2006
Last modified: July 6, 2016
This is version 123 of the entry and version 4 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Human chromosome 8
    Human chromosome 8: entries, gene names and cross-references to MIM
  2. Human entries with polymorphisms or disease mutations
    List of human entries with polymorphisms or disease mutations
  3. Human polymorphisms and disease mutations
    Index of human polymorphisms and disease mutations
  4. MIM cross-references
    Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot
  5. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.