Q9H7X0 (NAA60_HUMAN) Reviewed, UniProtKB/Swiss-Prot
Last modified
May 1, 2013.
Version 85.
History...
Names·Attributes·General annotation·Ontologies·Alt products·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order
Names·Attributes·General annotation·Ontologies·Alt products·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize orderNames and origin
| Protein names | Recommended name: N-alpha-acetyltransferase 60 EC=2.3.1.48 EC=2.3.1.88 Alternative name(s): Histone acetyltransferase type B protein 4 Short name=HAT4 N-acetyltransferase 15 NatF catalytic subunit | ||||||
| Gene names |
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| Organism | Homo sapiens (Human) [Reference proteome] | ||||||
| Taxonomic identifier | 9606 [NCBI] | ||||||
| Taxonomic lineage | Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Primates › Haplorrhini › Catarrhini › Hominidae › Homo![]() |
Protein attributes
| Sequence length | 242 AA. |
| Sequence status | Complete. |
| Protein existence | Evidence at protein level |
General annotation (Comments)
| Function | Histone acetyltransferase localized in the Golgi apparatus that mediates acetylation of free histone H4, thereby facilitating nucleosome assembly. Has a preference for free histone H4 'Lys-20'(H4K20ac), 'Lys-79'(H4K79ac) and 'Lys-91' (H4K91ac). Also displays alpha (N-terminal) acetyltransferase activity towards a range of N-terminal sequences including those starting with Met-Lys, Met-Val, Met-Ala and Met-Met. Required for normal chromosomal segregation during anaphase. Ref.8 Ref.9 |
| Catalytic activity | Acetyl-CoA + peptide = N(alpha)-acetylpeptide + CoA. Ref.8 Acetyl-CoA + [histone] = CoA + acetyl-[histone]. Ref.8 |
| Subcellular location | |
| Induction | Isoform 2 is imprinted. Promoter methylation of the paternal allele may restrict expression to the maternal allele in placenta and leukocytes. Isoform 1 is biallelically expressed. Ref.7 |
| Post-translational modification | Acetylated: autoacetylation is required for optimal acetyltransferase activity. |
| Sequence similarities | Belongs to the acetyltransferase family. NAA60 subfamily. Contains 1 N-acetyltransferase domain. |
Ontologies
| Keywords | |
|---|---|
| Biological process | Chromosome partition |
| Cellular component | Golgi apparatus Membrane |
| Coding sequence diversity | Alternative promoter usage Alternative splicing Polymorphism |
| Molecular function | Acyltransferase Chromatin regulator Transferase |
| PTM | Acetylation |
| Technical term | Complete proteome Reference proteome |
| Gene Ontology (GO) | |
| Biological_process | N-terminal peptidyl-methionine acetylation Inferred from direct assay Ref.9. Source: UniProtKB cell proliferationInferred from mutant phenotype Ref.8. Source: UniProtKB chromosome segregationInferred from sequence or structural similarity. Source: UniProtKB nucleosome assemblyInferred from direct assay Ref.8. Source: UniProtKB |
| Cellular_component | Golgi membrane Inferred from direct assay Ref.8. Source: UniProtKB |
| Molecular_function | H4 histone acetyltransferase activity Inferred from direct assay Ref.8. Source: UniProtKB peptide alpha-N-acetyltransferase activityInferred from direct assay Ref.9Ref.8. Source: UniProtKB |
| Complete GO annotation... | |
Alternative products
| This entry describes 5 isoforms produced by alternative promoter usage and alternative splicing. [Align] [Select] | ||||||
| Isoform 1 (identifier: Q9H7X0-1) This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry. | ||||||
| Isoform 2 (identifier: Q9H7X0-2) The sequence of this isoform differs from the canonical sequence as follows: 1-36: MTEVVPSSAL...KHLCGDWFPI → MFPRRRTERR...ASLSWEKSSR | ||||||
| Note: In placenta and leukocytes, expressed from the maternal allele, due to imprinting of the paternal allele. | ||||||
| Isoform 3 (identifier: Q9H7X0-3) The sequence of this isoform differs from the canonical sequence as follows: 1-65: Missing. | ||||||
| Note: Produced by alternative splicing. No experimental confirmation available. | ||||||
| Isoform 4 (identifier: Q9H7X0-4) The sequence of this isoform differs from the canonical sequence as follows: 113-242: GSLLLESLKD...KSGIEYSRTM → ESTARPTACS...SVFCKELPAI | ||||||
| Note: Produced by alternative splicing. No experimental confirmation available. | ||||||
| Isoform 5 (identifier: Q9H7X0-5) The sequence of this isoform differs from the canonical sequence as follows: 113-242: GSLLLESLKD...KSGIEYSRTM → EPHGLHPAPG...PPAEPAFLSI | ||||||
| Note: Produced by alternative splicing. No experimental confirmation available. |
Sequence annotation (Features)
| Feature key | Position(s) | Length | Description | Graphical view | Feature identifier | ||||
Molecule processing | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| Chain | 1 – 242 | 242 | N-alpha-acetyltransferase 60 | PRO_0000321566 | |||||
Regions | |||||||||
| Domain | 13 – 182 | 170 | N-acetyltransferase | ||||||
Amino acid modifications | |||||||||
| Modified residue | 79 | 1 | N6-acetyllysine; by autocatalysis Ref.8 | ||||||
| Modified residue | 105 | 1 | N6-acetyllysine; by autocatalysis Ref.8 | ||||||
| Modified residue | 109 | 1 | N6-acetyllysine; by autocatalysis Probable | ||||||
| Modified residue | 121 | 1 | N6-acetyllysine; by autocatalysis Probable | ||||||
| Modified residue | 156 | 1 | N6-acetyllysine; by autocatalysis Ref.8 | ||||||
Natural variations | |||||||||
| Alternative sequence | 1 – 65 | 65 | Missing in isoform 3. | VSP_044122 | |||||
| Alternative sequence | 1 – 36 | 36 | MTEVV…DWFPI → MFPRRRTERRLGDTGTRKKI AYRKAVPGGRKCGASLSWEK SSR in isoform 2. | VSP_044123 | |||||
| Alternative sequence | 113 – 242 | 130 | GSLLL…YSRTM → ESTARPTACSAASCHGRASL PRVASSTAGPCDVGWAAATR PHPSAARRARLPVHLTPSVF CKELPAI in isoform 4. | VSP_044124 | |||||
| Alternative sequence | 113 – 242 | 130 | GSLLL…YSRTM → EPHGLHPAPGLCTSQPEPLL HSAQSLPPGPQPALQLPAMV GHLFQEWHRVQPDHVMSAGQ PPPGPTLRPPAEPAFLSI in isoform 5. | VSP_044125 | |||||
| Natural variant | 218 | 1 | H → Q. Corresponds to variant rs34464545 [ dbSNP | Ensembl ]. | VAR_060995 | |||||
Experimental info | |||||||||
| Mutagenesis | 79 | 1 | K → R: Decreased histone acetyltransferase activity; when associated with R-105, R-109, R-121 and R-156. Ref.8 | ||||||
| Mutagenesis | 105 | 1 | K → R: Decreased histone acetyltransferase activity; when associated with R-79, R-109, R-121 and R-156. Ref.8 | ||||||
| Mutagenesis | 109 | 1 | K → R: Decreased histone acetyltransferase activity; when associated with R-79, R-105, R-121 and R-156. Ref.8 | ||||||
| Mutagenesis | 111 | 1 | G → A: Abolishes histone acetyltransferase activity. Ref.8 | ||||||
| Mutagenesis | 121 | 1 | K → R: Decreased histone acetyltransferase activity; when associated with R-79, R-105, R-109 and R-156. Ref.8 | ||||||
| Mutagenesis | 156 | 1 | K → R: Decreased histone acetyltransferase activity; when associated with R-79, R-105, R-109 and R-121. Ref.8 | ||||||
| Sequence conflict | 87 | 1 | S → T in AAQ88907. Ref.1 | ||||||
| Sequence conflict | 242 | 1 | M → I in CAG33605. Ref.3 | ||||||
| Isoform 5: | |||||||||
| Sequence conflict | 180 | 1 | R → Q in BAG60760. Ref.2 | ||||||
Sequences
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References
| « Hide 'large scale' references | |
| [1] | "The secreted protein discovery initiative (SPDI), a large-scale effort to identify novel human secreted and transmembrane proteins: a bioinformatics assessment." Clark H.F., Gurney A.L., Abaya E., Baker K., Baldwin D.T., Brush J., Chen J., Chow B., Chui C., Crowley C., Currell B., Deuel B., Dowd P., Eaton D., Foster J.S., Grimaldi C., Gu Q., Hass P.E. Gray A.M.Genome Res. 13:2265-2270(2003) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1). |
| [2] | "Complete sequencing and characterization of 21,243 full-length human cDNAs." Ota T., Suzuki Y., Nishikawa T., Otsuki T., Sugiyama T., Irie R., Wakamatsu A., Hayashi K., Sato H., Nagai K., Kimura K., Makita H., Sekine M., Obayashi M., Nishi T., Shibahara T., Tanaka T., Ishii S. Sugano S.Nat. Genet. 36:40-45(2004) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORMS 1; 2; 3; 4 AND 5). Tissue: Fetal brain, Mesangial cell, Teratocarcinoma and Testis. |
| [3] | "Cloning of human full open reading frames in Gateway(TM) system entry vector (pDONR201)." Ebert L., Schick M., Neubert P., Schatten R., Henze S., Korn B. Submitted (JUN-2004) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1). |
| [4] | "The sequence and analysis of duplication-rich human chromosome 16." Martin J., Han C., Gordon L.A., Terry A., Prabhakar S., She X., Xie G., Hellsten U., Chan Y.M., Altherr M., Couronne O., Aerts A., Bajorek E., Black S., Blumer H., Branscomb E., Brown N.C., Bruno W.J. Pennacchio L.A.Nature 432:988-994(2004) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. |
| [5] | Mural R.J., Istrail S., Sutton G.G., Florea L., Halpern A.L., Mobarry C.M., Lippert R., Walenz B., Shatkay H., Dew I., Miller J.R., Flanigan M.J., Edwards N.J., Bolanos R., Fasulo D., Halldorsson B.V., Hannenhalli S., Turner R. Venter J.C.Submitted (SEP-2005) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. |
| [6] | "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)." The MGC Project Team Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1). Tissue: Brain. |
| [7] | "Methylation screening of reciprocal genome-wide UPDs identifies novel human-specific imprinted genes." Nakabayashi K., Trujillo A.M., Tayama C., Camprubi C., Yoshida W., Lapunzina P., Sanchez A., Soejima H., Aburatani H., Nagae G., Ogata T., Hata K., Monk D. Hum. Mol. Genet. 20:3188-3197(2011) [PubMed] [Europe PMC] [Abstract] Cited for: IMPRINTING, INDUCTION. |
| [8] | "HAT4, a Golgi apparatus-anchored B-type histone acetyltransferase, acetylates free histone H4 and facilitates chromatin assembly." Yang X., Yu W., Shi L., Sun L., Liang J., Yi X., Li Q., Zhang Y., Yang F., Han X., Zhang D., Yang J., Yao Z., Shang Y. Mol. Cell 44:39-50(2011) [PubMed] [Europe PMC] [Abstract] Cited for: FUNCTION, CATALYTIC ACTIVITY, SUBCELLULAR LOCATION, ACETYLATION AT LYS-79; LYS-105; LYS-109; LYS-121 AND LYS-156, MUTAGENESIS OF LYS-79; LYS-105; LYS-109; GLY-111; LYS-121 AND LYS-156. |
| [9] | "NatF contributes to an evolutionary shift in protein N-terminal acetylation and is important for normal chromosome segregation." Van Damme P., Hole K., Pimenta-Marques A., Helsens K., Vandekerckhove J., Martinho R.G., Gevaert K., Arnesen T. PLoS Genet. 7:E1002169-E1002169(2011) [PubMed] [Europe PMC] [Abstract] Cited for: FUNCTION. |
Cross-references
Sequence databases | |
|---|---|
| EMBL GenBank DDBJ | AY358543 mRNA. Translation: AAQ88907.1. AK024216 mRNA. Translation: BAB14853.1. AK092005 mRNA. Translation: BAG52462.1. AK297219 mRNA. Translation: BAG59702.1. AK298566 mRNA. Translation: BAG60760.1. AK302361 mRNA. Translation: BAG63686.1. CR457324 mRNA. Translation: CAG33605.1. AC004224 Genomic DNA. No translation available. AC025283 Genomic DNA. No translation available. CH471112 Genomic DNA. Translation: EAW85358.1. CH471112 Genomic DNA. Translation: EAW85359.1. CH471112 Genomic DNA. Translation: EAW85360.1. CH471112 Genomic DNA. Translation: EAW85361.1. CH471112 Genomic DNA. Translation: EAW85362.1. CH471112 Genomic DNA. Translation: EAW85363.1. CH471112 Genomic DNA. Translation: EAW85364.1. BC011267 mRNA. Translation: AAH11267.1. |
| IPI | IPI00155437. |
| RefSeq | NP_001077069.1. NM_001083600.1. NP_001077070.1. NM_001083601.1. NP_079121.1. NM_024845.2. |
| UniGene | Hs.513296. |
3D structure databases | |
| ProteinModelPortal | Q9H7X0. |
| ModBase | Search... |
Protein-protein interaction databases | |
| STRING | 9606.ENSP00000385903. |
PTM databases | |
| PhosphoSite | Q9H7X0. |
Polymorphism databases | |
| DMDM | 74733721. |
Proteomic databases | |
| PaxDb | Q9H7X0. |
| PRIDE | Q9H7X0. |
Protocols and materials databases | |
| DNASU | 79903. |
| StructuralBiologyKnowledgebase | Search... |
Genome annotation databases | |
| Ensembl | ENST00000360862; ENSP00000354108; ENSG00000122390. ENST00000407558; ENSP00000385903; ENSG00000122390. ENST00000414063; ENSP00000393224; ENSG00000122390. ENST00000421765; ENSP00000405873; ENSG00000122390. ENST00000424546; ENSP00000401237; ENSG00000122390. ENST00000570819; ENSP00000460763; ENSG00000122390. ENST00000572584; ENSP00000459057; ENSG00000122390. ENST00000572942; ENSP00000461730; ENSG00000122390. ENST00000573580; ENSP00000459055; ENSG00000122390. ENST00000575076; ENSP00000458667; ENSG00000122390. |
| GeneID | 79903. |
| KEGG | hsa:79903. |
| UCSC | uc002cvg.2. human. |
Organism-specific databases | |
| CTD | 79903. |
| GeneCards | GC16P003495. |
| H-InvDB | HIX0012768. HIX0173265. |
| HGNC | HGNC:25875. NAA60. |
| HPA | HPA040916. |
| MIM | 614246. gene. |
| neXtProt | NX_Q9H7X0. |
| PharmGKB | PA164723438. |
| GenAtlas | Search... |
Phylogenomic databases | |
| eggNOG | NOG276305. |
| HOGENOM | HOG000280717. |
| HOVERGEN | HBG061680. |
| InParanoid | Q9H7X0. |
| OMA | PPWTILI. |
| OrthoDB | EOG45TCNW. |
Gene expression databases | |
| ArrayExpress | Q9H7X0. |
| Bgee | Q9H7X0. |
| CleanEx | HS_NAT15. |
| Genevestigator | Q9H7X0. |
Family and domain databases | |
| Gene3D | 3.40.630.30. 1 hit. |
| InterPro | IPR016181. Acyl_CoA_acyltransferase. IPR000182. GNAT_dom. [Graphical view] |
| Pfam | PF00583. Acetyltransf_1. 1 hit. [Graphical view] |
| SUPFAM | SSF55729. Acyl_CoA_acyltransferase. 1 hit. |
| PROSITE | PS51186. GNAT. 1 hit. [Graphical view] |
| ProtoNet | Search... |
Other | |
| ChiTaRS | NAA60. human. |
| GenomeRNAi | 79903. |
| NextBio | 69755. |
| SOURCE | Search... |
Entry information
| Entry name | NAA60_HUMAN | ||||||||
| Accession | Primary (citable) accession number: Q9H7X0 Secondary accession number(s): B3KRQ0 Q6UX26 | ||||||||
| Entry history |
| ||||||||
| Entry status | Reviewed (UniProtKB/Swiss-Prot) | ||||||||
| Annotation program | Chordata Protein Annotation Program | ||||||||
| Disclaimer | Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care. | ||||||||
Relevant documents
| Human chromosome 16 Human chromosome 16: entries, gene names and cross-references to MIM |
| Human entries with polymorphisms or disease mutations List of human entries with polymorphisms or disease mutations |
| Human polymorphisms and disease mutations Index of human polymorphisms and disease mutations |
| MIM cross-references Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot |
| SIMILARITY comments Index of protein domains and families |

Clusters with
