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Protein

WD repeat and coiled-coil-containing protein C2orf44

Gene

C2orf44

Organism
Homo sapiens (Human)
Status
Reviewed-Annotation score: Annotation score: 4 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

  • kinase binding Source: UniProtKB

GO - Biological processi

  • protein oligomerization Source: UniProtKB
Complete GO annotation...

Names & Taxonomyi

Protein namesi
Recommended name:
WD repeat and coiled-coil-containing protein C2orf44Curated
Alternative name(s):
WD repeat and coiled-coil-containing protein1 Publication
Short name:
WDCP1 Publication
Gene namesi
Name:C2orf44Imported
ORF Names:PP384
OrganismiHomo sapiens (Human)
Taxonomic identifieri9606 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo
ProteomesiUP000005640 Componenti: Chromosome 2

Organism-specific databases

HGNCiHGNC:26157. C2orf44.

Pathology & Biotechi

Mutagenesis

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Mutagenesisi540 – 5401P → A: Loss of interaction with HCK; when associated with P-543. 1 Publication
Mutagenesisi543 – 5431P → A: Loss of interaction with HCK; when associated with P-543. 1 Publication

Organism-specific databases

PharmGKBiPA147358716.

Polymorphism and mutation databases

BioMutaiC2orf44.
DMDMi74752699.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 721721WD repeat and coiled-coil-containing protein C2orf44PRO_0000299501Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Modified residuei1 – 11N-acetylmethionine1 Publication
Modified residuei299 – 2991Phosphoserine1 Publication
Modified residuei501 – 5011Phosphoserine1 Publication
Modified residuei523 – 5231Phosphoserine1 Publication
Modified residuei690 – 6901Phosphoserine2 Publications

Post-translational modificationi

Phosphorylated on Tyr when associated with HCK.1 Publication

Keywords - PTMi

Acetylation, Phosphoprotein

Proteomic databases

MaxQBiQ9H6R7.
PaxDbiQ9H6R7.
PRIDEiQ9H6R7.

PTM databases

PhosphoSiteiQ9H6R7.

Expressioni

Gene expression databases

BgeeiQ9H6R7.
CleanExiHS_C2orf44.
ExpressionAtlasiQ9H6R7. baseline and differential.
GenevisibleiQ9H6R7. HS.

Organism-specific databases

HPAiHPA041054.

Interactioni

Subunit structurei

Oligomer. Interacts with HCK (via SH3 domain).2 Publications

Protein-protein interaction databases

BioGridi123217. 25 interactions.
IntActiQ9H6R7. 16 interactions.
MINTiMINT-1370597.
STRINGi9606.ENSP00000295148.

Structurei

3D structure databases

ProteinModelPortaliQ9H6R7.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Repeati55 – 9844WD 1Add
BLAST
Repeati154 – 19441WD 2Add
BLAST

Region

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Regioni539 – 5457Interaction with HCK1 Publication

Coiled coil

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Coiled coili556 – 58429Sequence AnalysisAdd
BLAST

Sequence similaritiesi

Contains 2 WD repeats.Curated

Keywords - Domaini

Coiled coil, Repeat, WD repeat

Phylogenomic databases

eggNOGiNOG41788.
GeneTreeiENSGT00390000001660.
HOGENOMiHOG000111320.
HOVERGENiHBG055062.
InParanoidiQ9H6R7.
OMAiVWQLCPS.
OrthoDBiEOG7P02HR.
PhylomeDBiQ9H6R7.
TreeFamiTF333528.

Family and domain databases

InterProiIPR028041. DUF4613.
[Graphical view]
PfamiPF15390. DUF4613. 1 hit.
[Graphical view]

Sequences (3)i

Sequence statusi: Complete.

This entry describes 3 isoformsi produced by alternative splicing. AlignAdd to basket

Isoform 1 (identifier: Q9H6R7-1) [UniParc]FASTAAdd to basket

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide

        10         20         30         40         50
MELGKGKLLR TGLNALHQAV HPIHGLAWTD GNQVVLTDLR LHSGEVKFGD
60 70 80 90 100
SKVIGQFECV CGLSWAPPVA DDTPVLLAVQ HEKHVTVWQL CPSPMESSKW
110 120 130 140 150
LTSQTCEIRG SLPILPQGCV WHPKCAILTV LTAQDVSIFP NVHSDDSQVK
160 170 180 190 200
ADINTQGRIH CACWTQDGLR LVVAVGSSLH SYIWDSAQKT LHRCSSCLVF
210 220 230 240 250
DVDSHVCSIT ATVDSQVAIA TELPLDKICG LNASETFNIP PNSKDMTPYA
260 270 280 290 300
LPVIGEVRSM DKEATDSETN SEVSVSSSYL EPLDLTHIHF NQHKSEGNSL
310 320 330 340 350
ICLRKKDYLT GTGQDSSHLV LVTFKKAVTM TRKVTIPGIL VPDLIAFNLK
360 370 380 390 400
AHVVAVASNT CNIILIYSVI PSSVPNIQQI RLENTERPKG ICFLTDQLLL
410 420 430 440 450
ILVGKQKLTD TTFLPSSKSD QYAISLIVRE IMLEEEPSIT SGESQTTYST
460 470 480 490 500
FSAPLNKANR KKLIESLSPD FCHQNKGLLL TVNTSSQNGR PGRTLIKEIQ
510 520 530 540 550
SPLSSICDGS IALDAEPVTQ PASLPRHSST PDHTSTLEPP RLPQRKNLQS
560 570 580 590 600
EKETYQLSKE VEILSRNLVE MQRCLSELTN RLHNGKKSSS VYPLSQDLPY
610 620 630 640 650
VHIIYQKPYY LGPVVEKRAV LLCDGKLRLS TVQQTFGLSL IEMLHDSHWI
660 670 680 690 700
LLSADSEGFI PLTFTATQEI IIRDGSLSRS DVFRDSFSHS PGAVSSLKVF
710 720
TGLAAPSLDT TGCCNHVDGM A
Length:721
Mass (Da):79,136
Last modified:March 1, 2001 - v1
Checksum:i4A4164C81A693DAE
GO
Isoform 2 (identifier: Q9H6R7-2) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     607-622: KPYYLGPVVEKRAVLL → IPTGFFSLLTVRALSR
     623-721: Missing.

Note: No experimental confirmation available.
Show »
Length:622
Mass (Da):68,456
Checksum:i04657B17D5096FD0
GO
Isoform 3 (identifier: Q9H6R7-3) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     1-487: Missing.
     488-488: N → M

Note: No experimental confirmation available.
Show »
Length:234
Mass (Da):25,845
Checksum:iD06EAF3E6B5A9073
GO

Natural variant

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Natural varianti102 – 1021T → M.
Corresponds to variant rs3731620 [ dbSNP | Ensembl ].
VAR_034834
Natural varianti454 – 4541P → S in a breast cancer sample; somatic mutation. 1 Publication
VAR_035876

Alternative sequence

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Alternative sequencei1 – 487487Missing in isoform 3. 1 PublicationVSP_027712Add
BLAST
Alternative sequencei488 – 4881N → M in isoform 3. 1 PublicationVSP_027715
Alternative sequencei607 – 62216KPYYL…RAVLL → IPTGFFSLLTVRALSR in isoform 2. 1 PublicationVSP_027713Add
BLAST
Alternative sequencei623 – 72199Missing in isoform 2. 1 PublicationVSP_027714Add
BLAST

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF218013 mRNA. Translation: AAG17255.1.
AK025598 mRNA. Translation: BAB15186.1.
AC104665 Genomic DNA. Translation: AAY24115.1.
CH471053 Genomic DNA. Translation: EAX00771.1.
CH471053 Genomic DNA. Translation: EAX00772.1.
BC035698 mRNA. Translation: AAH35698.1.
CCDSiCCDS1705.1. [Q9H6R7-1]
CCDS46229.1. [Q9H6R7-2]
RefSeqiNP_001135791.1. NM_001142319.1. [Q9H6R7-2]
NP_079479.1. NM_025203.2. [Q9H6R7-1]
UniGeneiHs.24624.

Genome annotation databases

EnsembliENST00000295148; ENSP00000295148; ENSG00000163026.
ENST00000406895; ENSP00000385816; ENSG00000163026. [Q9H6R7-2]
GeneIDi80304.
KEGGihsa:80304.
UCSCiuc002rep.2. human. [Q9H6R7-1]
uc010eya.2. human. [Q9H6R7-2]

Keywords - Coding sequence diversityi

Alternative splicing, Polymorphism

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF218013 mRNA. Translation: AAG17255.1.
AK025598 mRNA. Translation: BAB15186.1.
AC104665 Genomic DNA. Translation: AAY24115.1.
CH471053 Genomic DNA. Translation: EAX00771.1.
CH471053 Genomic DNA. Translation: EAX00772.1.
BC035698 mRNA. Translation: AAH35698.1.
CCDSiCCDS1705.1. [Q9H6R7-1]
CCDS46229.1. [Q9H6R7-2]
RefSeqiNP_001135791.1. NM_001142319.1. [Q9H6R7-2]
NP_079479.1. NM_025203.2. [Q9H6R7-1]
UniGeneiHs.24624.

3D structure databases

ProteinModelPortaliQ9H6R7.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi123217. 25 interactions.
IntActiQ9H6R7. 16 interactions.
MINTiMINT-1370597.
STRINGi9606.ENSP00000295148.

PTM databases

PhosphoSiteiQ9H6R7.

Polymorphism and mutation databases

BioMutaiC2orf44.
DMDMi74752699.

Proteomic databases

MaxQBiQ9H6R7.
PaxDbiQ9H6R7.
PRIDEiQ9H6R7.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENST00000295148; ENSP00000295148; ENSG00000163026.
ENST00000406895; ENSP00000385816; ENSG00000163026. [Q9H6R7-2]
GeneIDi80304.
KEGGihsa:80304.
UCSCiuc002rep.2. human. [Q9H6R7-1]
uc010eya.2. human. [Q9H6R7-2]

Organism-specific databases

CTDi80304.
GeneCardsiGC02M024252.
H-InvDBHIX0001870.
HGNCiHGNC:26157. C2orf44.
HPAiHPA041054.
MIMi616234. gene.
neXtProtiNX_Q9H6R7.
PharmGKBiPA147358716.
GenAtlasiSearch...

Phylogenomic databases

eggNOGiNOG41788.
GeneTreeiENSGT00390000001660.
HOGENOMiHOG000111320.
HOVERGENiHBG055062.
InParanoidiQ9H6R7.
OMAiVWQLCPS.
OrthoDBiEOG7P02HR.
PhylomeDBiQ9H6R7.
TreeFamiTF333528.

Miscellaneous databases

GenomeRNAii80304.
NextBioi70768.
PROiQ9H6R7.
SOURCEiSearch...

Gene expression databases

BgeeiQ9H6R7.
CleanExiHS_C2orf44.
ExpressionAtlasiQ9H6R7. baseline and differential.
GenevisibleiQ9H6R7. HS.

Family and domain databases

InterProiIPR028041. DUF4613.
[Graphical view]
PfamiPF15390. DUF4613. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Molecular characterization of WDCP, a novel fusion partner for the anaplastic lymphoma tyrosine kinase ALK."
    Yokoyama N., Miller W.T.
    Biomed. Rep. 3:9-13(2015) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [MRNA], INTERACTION WITH HCK, MUTAGENESIS OF PRO-540 AND PRO-543.
  2. "Large-scale cDNA transfection screening for genes related to cancer development and progression."
    Wan D., Gong Y., Qin W., Zhang P., Li J., Wei L., Zhou X., Li H., Qiu X., Zhong F., He L., Yu J., Yao G., Jiang H., Qian L., Yu Y., Shu H., Chen X.
    , Xu H., Guo M., Pan Z., Chen Y., Ge C., Yang S., Gu J.
    Proc. Natl. Acad. Sci. U.S.A. 101:15724-15729(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 3).
  3. "Complete sequencing and characterization of 21,243 full-length human cDNAs."
    Ota T., Suzuki Y., Nishikawa T., Otsuki T., Sugiyama T., Irie R., Wakamatsu A., Hayashi K., Sato H., Nagai K., Kimura K., Makita H., Sekine M., Obayashi M., Nishi T., Shibahara T., Tanaka T., Ishii S.
    , Yamamoto J., Saito K., Kawai Y., Isono Y., Nakamura Y., Nagahari K., Murakami K., Yasuda T., Iwayanagi T., Wagatsuma M., Shiratori A., Sudo H., Hosoiri T., Kaku Y., Kodaira H., Kondo H., Sugawara M., Takahashi M., Kanda K., Yokoi T., Furuya T., Kikkawa E., Omura Y., Abe K., Kamihara K., Katsuta N., Sato K., Tanikawa M., Yamazaki M., Ninomiya K., Ishibashi T., Yamashita H., Murakawa K., Fujimori K., Tanai H., Kimata M., Watanabe M., Hiraoka S., Chiba Y., Ishida S., Ono Y., Takiguchi S., Watanabe S., Yosida M., Hotuta T., Kusano J., Kanehori K., Takahashi-Fujii A., Hara H., Tanase T.-O., Nomura Y., Togiya S., Komai F., Hara R., Takeuchi K., Arita M., Imose N., Musashino K., Yuuki H., Oshima A., Sasaki N., Aotsuka S., Yoshikawa Y., Matsunawa H., Ichihara T., Shiohata N., Sano S., Moriya S., Momiyama H., Satoh N., Takami S., Terashima Y., Suzuki O., Nakagawa S., Senoh A., Mizoguchi H., Goto Y., Shimizu F., Wakebe H., Hishigaki H., Watanabe T., Sugiyama A., Takemoto M., Kawakami B., Yamazaki M., Watanabe K., Kumagai A., Itakura S., Fukuzumi Y., Fujimori Y., Komiyama M., Tashiro H., Tanigami A., Fujiwara T., Ono T., Yamada K., Fujii Y., Ozaki K., Hirao M., Ohmori Y., Kawabata A., Hikiji T., Kobatake N., Inagaki H., Ikema Y., Okamoto S., Okitani R., Kawakami T., Noguchi S., Itoh T., Shigeta K., Senba T., Matsumura K., Nakajima Y., Mizuno T., Morinaga M., Sasaki M., Togashi T., Oyama M., Hata H., Watanabe M., Komatsu T., Mizushima-Sugano J., Satoh T., Shirai Y., Takahashi Y., Nakagawa K., Okumura K., Nagase T., Nomura N., Kikuchi H., Masuho Y., Yamashita R., Nakai K., Yada T., Nakamura Y., Ohara O., Isogai T., Sugano S.
    Nat. Genet. 36:40-45(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1).
    Tissue: Hepatoma.
  4. "Generation and annotation of the DNA sequences of human chromosomes 2 and 4."
    Hillier L.W., Graves T.A., Fulton R.S., Fulton L.A., Pepin K.H., Minx P., Wagner-McPherson C., Layman D., Wylie K., Sekhon M., Becker M.C., Fewell G.A., Delehaunty K.D., Miner T.L., Nash W.E., Kremitzki C., Oddy L., Du H.
    , Sun H., Bradshaw-Cordum H., Ali J., Carter J., Cordes M., Harris A., Isak A., van Brunt A., Nguyen C., Du F., Courtney L., Kalicki J., Ozersky P., Abbott S., Armstrong J., Belter E.A., Caruso L., Cedroni M., Cotton M., Davidson T., Desai A., Elliott G., Erb T., Fronick C., Gaige T., Haakenson W., Haglund K., Holmes A., Harkins R., Kim K., Kruchowski S.S., Strong C.M., Grewal N., Goyea E., Hou S., Levy A., Martinka S., Mead K., McLellan M.D., Meyer R., Randall-Maher J., Tomlinson C., Dauphin-Kohlberg S., Kozlowicz-Reilly A., Shah N., Swearengen-Shahid S., Snider J., Strong J.T., Thompson J., Yoakum M., Leonard S., Pearman C., Trani L., Radionenko M., Waligorski J.E., Wang C., Rock S.M., Tin-Wollam A.-M., Maupin R., Latreille P., Wendl M.C., Yang S.-P., Pohl C., Wallis J.W., Spieth J., Bieri T.A., Berkowicz N., Nelson J.O., Osborne J., Ding L., Meyer R., Sabo A., Shotland Y., Sinha P., Wohldmann P.E., Cook L.L., Hickenbotham M.T., Eldred J., Williams D., Jones T.A., She X., Ciccarelli F.D., Izaurralde E., Taylor J., Schmutz J., Myers R.M., Cox D.R., Huang X., McPherson J.D., Mardis E.R., Clifton S.W., Warren W.C., Chinwalla A.T., Eddy S.R., Marra M.A., Ovcharenko I., Furey T.S., Miller W., Eichler E.E., Bork P., Suyama M., Torrents D., Waterston R.H., Wilson R.K.
    Nature 434:724-731(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
  5. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
  6. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
  7. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
    The MGC Project Team
    Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 2).
    Tissue: Eye.
  8. "Identification of novel SH3 domain ligands for the Src family kinase Hck. Wiskott-Aldrich syndrome protein (WASP), WASP-interacting protein (WIP), and ELMO1."
    Scott M.P., Zappacosta F., Kim E.Y., Annan R.S., Miller W.T.
    J. Biol. Chem. 277:28238-28246(2002) [PubMed] [Europe PMC] [Abstract]
    Cited for: INTERACTION WITH HCK, IDENTIFICATION BY MASS SPECTROMETRY.
  9. "Kinase-selective enrichment enables quantitative phosphoproteomics of the kinome across the cell cycle."
    Daub H., Olsen J.V., Bairlein M., Gnad F., Oppermann F.S., Korner R., Greff Z., Keri G., Stemmann O., Mann M.
    Mol. Cell 31:438-448(2008) [PubMed] [Europe PMC] [Abstract]
    Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-299; SER-501 AND SER-523, IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
    Tissue: Cervix carcinoma.
  10. Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-690, IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
    Tissue: Cervix carcinoma.
  11. "Quantitative phosphoproteomic analysis of T cell receptor signaling reveals system-wide modulation of protein-protein interactions."
    Mayya V., Lundgren D.H., Hwang S.-I., Rezaul K., Wu L., Eng J.K., Rodionov V., Han D.K.
    Sci. Signal. 2:RA46-RA46(2009) [PubMed] [Europe PMC] [Abstract]
    Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-690, IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
    Tissue: Leukemic T-cell.
  12. "System-wide temporal characterization of the proteome and phosphoproteome of human embryonic stem cell differentiation."
    Rigbolt K.T., Prokhorova T.A., Akimov V., Henningsen J., Johansen P.T., Kratchmarova I., Kassem M., Mann M., Olsen J.V., Blagoev B.
    Sci. Signal. 4:RS3-RS3(2011) [PubMed] [Europe PMC] [Abstract]
    Cited for: IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
  13. Cited for: ACETYLATION [LARGE SCALE ANALYSIS] AT MET-1, IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
  14. Cited for: VARIANT [LARGE SCALE ANALYSIS] SER-454.

Entry informationi

Entry nameiCB044_HUMAN
AccessioniPrimary (citable) accession number: Q9H6R7
Secondary accession number(s): D6W532, Q8IYK0, Q9HBP5
Entry historyi
Integrated into UniProtKB/Swiss-Prot: September 11, 2007
Last sequence update: March 1, 2001
Last modified: July 22, 2015
This is version 97 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Human chromosome 2
    Human chromosome 2: entries, gene names and cross-references to MIM
  2. Human entries with polymorphisms or disease mutations
    List of human entries with polymorphisms or disease mutations
  3. Human polymorphisms and disease mutations
    Index of human polymorphisms and disease mutations
  4. MIM cross-references
    Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot
  5. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.