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Q9H5F2

- CK001_HUMAN

UniProt

Q9H5F2 - CK001_HUMAN

Protein

UPF0686 protein C11orf1

Gene

C11orf1

Organism
Homo sapiens (Human)
Status
Reviewed - Annotation score: 2 out of 5- Experimental evidence at transcript leveli
  1. Names & Taxonomyi

    Protein namesi
    Recommended name:
    UPF0686 protein C11orf1
    Gene namesi
    Name:C11orf1
    OrganismiHomo sapiens (Human)
    Taxonomic identifieri9606 [NCBI]
    Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo
    ProteomesiUP000005640: Chromosome 11

    Organism-specific databases

    HGNCiHGNC:1163. C11orf1.

    Subcellular locationi

    Nucleus 1 Publication

    GO - Cellular componenti

    1. nucleus Source: UniProtKB

    Keywords - Cellular componenti

    Nucleus

    Pathology & Biotechi

    Organism-specific databases

    PharmGKBiPA25477.

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 150150UPF0686 protein C11orf1PRO_0000089829Add
    BLAST

    Proteomic databases

    PaxDbiQ9H5F2.
    PRIDEiQ9H5F2.

    PTM databases

    PhosphoSiteiQ9H5F2.

    Expressioni

    Gene expression databases

    ArrayExpressiQ9H5F2.
    BgeeiQ9H5F2.
    CleanExiHS_C11orf1.
    GenevestigatoriQ9H5F2.

    Organism-specific databases

    HPAiHPA038410.

    Interactioni

    Protein-protein interaction databases

    BioGridi122286. 1 interaction.
    IntActiQ9H5F2. 1 interaction.
    MINTiMINT-1385135.
    STRINGi9606.ENSP00000260276.

    Structurei

    3D structure databases

    ProteinModelPortaliQ9H5F2.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the UPF0686 family.Curated

    Phylogenomic databases

    eggNOGiNOG39668.
    HOGENOMiHOG000067902.
    HOVERGENiHBG050969.
    InParanoidiQ9H5F2.
    PhylomeDBiQ9H5F2.
    TreeFamiTF329225.

    Family and domain databases

    InterProiIPR009524. UPF0686.
    [Graphical view]
    PfamiPF06608. DUF1143. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Q9H5F2-1 [UniParc]FASTAAdd to Basket

    « Hide

    MAASQCLCCS KFLFQRQNLA CFLTNPHCGS LVNADGHGEV WTDWNNMSKF    50
    FQYGWRCTTN ENTYSNRTLM GNWNQERYDL RNIVQPKPLP SQFGHYFETT 100
    YDTSYNNKMP LSTHRFKREP HWFPGHQPEL DPPRYKCTEK STYMNSYSKP 150
    Length:150
    Mass (Da):17,785
    Last modified:March 1, 2001 - v1
    Checksum:iBB1D0B7EDE8F2C7B
    GO

    Natural variant

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Natural varianti40 – 401V → A.2 Publications
    Corresponds to variant rs9280 [ dbSNP | Ensembl ].
    VAR_054163
    Natural varianti49 – 491K → Q.
    Corresponds to variant rs11540721 [ dbSNP | Ensembl ].
    VAR_050861
    Natural varianti85 – 851Q → H.
    Corresponds to variant rs3180820 [ dbSNP | Ensembl ].
    VAR_050862

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AJ250229 mRNA. Translation: CAB96538.1.
    AK027152 mRNA. Translation: BAB15674.1.
    CR457378 mRNA. Translation: CAG33659.1.
    BC020628 mRNA. Translation: AAH20628.1.
    CCDSiCCDS8350.1.
    RefSeqiNP_073598.1. NM_022761.2.
    UniGeneiHs.17546.

    Genome annotation databases

    EnsembliENST00000260276; ENSP00000260276; ENSG00000137720.
    GeneIDi64776.
    KEGGihsa:64776.
    UCSCiuc001pmd.3. human.

    Polymorphism databases

    DMDMi47605552.

    Keywords - Coding sequence diversityi

    Polymorphism

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AJ250229 mRNA. Translation: CAB96538.1 .
    AK027152 mRNA. Translation: BAB15674.1 .
    CR457378 mRNA. Translation: CAG33659.1 .
    BC020628 mRNA. Translation: AAH20628.1 .
    CCDSi CCDS8350.1.
    RefSeqi NP_073598.1. NM_022761.2.
    UniGenei Hs.17546.

    3D structure databases

    ProteinModelPortali Q9H5F2.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    BioGridi 122286. 1 interaction.
    IntActi Q9H5F2. 1 interaction.
    MINTi MINT-1385135.
    STRINGi 9606.ENSP00000260276.

    PTM databases

    PhosphoSitei Q9H5F2.

    Polymorphism databases

    DMDMi 47605552.

    Proteomic databases

    PaxDbi Q9H5F2.
    PRIDEi Q9H5F2.

    Protocols and materials databases

    DNASUi 64776.
    Structural Biology Knowledgebase Search...

    Genome annotation databases

    Ensembli ENST00000260276 ; ENSP00000260276 ; ENSG00000137720 .
    GeneIDi 64776.
    KEGGi hsa:64776.
    UCSCi uc001pmd.3. human.

    Organism-specific databases

    CTDi 64776.
    GeneCardsi GC11P111749.
    H-InvDB HIX0010114.
    HGNCi HGNC:1163. C11orf1.
    HPAi HPA038410.
    neXtProti NX_Q9H5F2.
    PharmGKBi PA25477.
    GenAtlasi Search...

    Phylogenomic databases

    eggNOGi NOG39668.
    HOGENOMi HOG000067902.
    HOVERGENi HBG050969.
    InParanoidi Q9H5F2.
    PhylomeDBi Q9H5F2.
    TreeFami TF329225.

    Miscellaneous databases

    GeneWikii C11orf1.
    GenomeRNAii 64776.
    NextBioi 66794.

    Gene expression databases

    ArrayExpressi Q9H5F2.
    Bgeei Q9H5F2.
    CleanExi HS_C11orf1.
    Genevestigatori Q9H5F2.

    Family and domain databases

    InterProi IPR009524. UPF0686.
    [Graphical view ]
    Pfami PF06608. DUF1143. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [MRNA], SUBCELLULAR LOCATION, VARIANT ALA-40.
    2. "Complete sequencing and characterization of 21,243 full-length human cDNAs."
      Ota T., Suzuki Y., Nishikawa T., Otsuki T., Sugiyama T., Irie R., Wakamatsu A., Hayashi K., Sato H., Nagai K., Kimura K., Makita H., Sekine M., Obayashi M., Nishi T., Shibahara T., Tanaka T., Ishii S.
      , Yamamoto J., Saito K., Kawai Y., Isono Y., Nakamura Y., Nagahari K., Murakami K., Yasuda T., Iwayanagi T., Wagatsuma M., Shiratori A., Sudo H., Hosoiri T., Kaku Y., Kodaira H., Kondo H., Sugawara M., Takahashi M., Kanda K., Yokoi T., Furuya T., Kikkawa E., Omura Y., Abe K., Kamihara K., Katsuta N., Sato K., Tanikawa M., Yamazaki M., Ninomiya K., Ishibashi T., Yamashita H., Murakawa K., Fujimori K., Tanai H., Kimata M., Watanabe M., Hiraoka S., Chiba Y., Ishida S., Ono Y., Takiguchi S., Watanabe S., Yosida M., Hotuta T., Kusano J., Kanehori K., Takahashi-Fujii A., Hara H., Tanase T.-O., Nomura Y., Togiya S., Komai F., Hara R., Takeuchi K., Arita M., Imose N., Musashino K., Yuuki H., Oshima A., Sasaki N., Aotsuka S., Yoshikawa Y., Matsunawa H., Ichihara T., Shiohata N., Sano S., Moriya S., Momiyama H., Satoh N., Takami S., Terashima Y., Suzuki O., Nakagawa S., Senoh A., Mizoguchi H., Goto Y., Shimizu F., Wakebe H., Hishigaki H., Watanabe T., Sugiyama A., Takemoto M., Kawakami B., Yamazaki M., Watanabe K., Kumagai A., Itakura S., Fukuzumi Y., Fujimori Y., Komiyama M., Tashiro H., Tanigami A., Fujiwara T., Ono T., Yamada K., Fujii Y., Ozaki K., Hirao M., Ohmori Y., Kawabata A., Hikiji T., Kobatake N., Inagaki H., Ikema Y., Okamoto S., Okitani R., Kawakami T., Noguchi S., Itoh T., Shigeta K., Senba T., Matsumura K., Nakajima Y., Mizuno T., Morinaga M., Sasaki M., Togashi T., Oyama M., Hata H., Watanabe M., Komatsu T., Mizushima-Sugano J., Satoh T., Shirai Y., Takahashi Y., Nakagawa K., Okumura K., Nagase T., Nomura N., Kikuchi H., Masuho Y., Yamashita R., Nakai K., Yada T., Nakamura Y., Ohara O., Isogai T., Sugano S.
      Nat. Genet. 36:40-45(2004) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
      Tissue: Lung.
    3. "Cloning of human full open reading frames in Gateway(TM) system entry vector (pDONR201)."
      Ebert L., Schick M., Neubert P., Schatten R., Henze S., Korn B.
      Submitted (JUN-2004) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA], VARIANT ALA-40.
    4. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
      The MGC Project Team
      Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
      Tissue: Embryonic testis carcinoma.

    Entry informationi

    Entry nameiCK001_HUMAN
    AccessioniPrimary (citable) accession number: Q9H5F2
    Secondary accession number(s): Q6I9X7, Q9NQC6
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: May 24, 2004
    Last sequence update: March 1, 2001
    Last modified: October 1, 2014
    This is version 87 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programChordata Protein Annotation Program
    DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteome

    Documents

    1. Human chromosome 11
      Human chromosome 11: entries, gene names and cross-references to MIM
    2. Human entries with polymorphisms or disease mutations
      List of human entries with polymorphisms or disease mutations
    3. Human polymorphisms and disease mutations
      Index of human polymorphisms and disease mutations
    4. SIMILARITY comments
      Index of protein domains and families
    5. Uncharacterized protein families (UPF)
      List of uncharacterized protein family (UPF) entries

    External Data

    Dasty 3