Q9H3S7 (PTN23_HUMAN) Reviewed, UniProtKB/Swiss-Prot
Last modified
May 1, 2013.
Version 104.
History...
Names·Attributes·General annotation·Ontologies·Interactions·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order
Names·Attributes·General annotation·Ontologies·Interactions·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize orderNames and origin
| Protein names | Recommended name: Tyrosine-protein phosphatase non-receptor type 23 EC=3.1.3.48 Alternative name(s): His domain-containing protein tyrosine phosphatase Short name=HD-PTP Protein tyrosine phosphatase TD14 Short name=PTP-TD14 | ||||
| Gene names |
| ||||
| Organism | Homo sapiens (Human) [Reference proteome] | ||||
| Taxonomic identifier | 9606 [NCBI] | ||||
| Taxonomic lineage | Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Primates › Haplorrhini › Catarrhini › Hominidae › Homo![]() |
Protein attributes
| Sequence length | 1636 AA. |
| Sequence status | Complete. |
| Protein existence | Evidence at protein level |
General annotation (Comments)
| Function | May act as a negative regulator of Ras-mediated mitogenic activity. Plays a role in ciliogenesis. Ref.13 |
| Catalytic activity | Protein tyrosine phosphate + H2O = protein tyrosine + phosphate. |
| Subunit structure | Interacts with GRAP2 and GRB2. Ref.14 |
| Subcellular location | Nucleus. Cytoplasm. Cytoplasmic vesicle. Endosome. Cytoplasm › cytoskeleton › cilium basal body Ref.1 Ref.13 Ref.14. |
| Sequence similarities | Belongs to the protein-tyrosine phosphatase family. Non-receptor class subfamily. Contains 1 BRO1 domain. Contains 2 TPR repeats. Contains 1 tyrosine-protein phosphatase domain. |
| Sequence caution | The sequence BAA95995.2 differs from that shown. Reason: Erroneous initiation. |
Ontologies
Binary interactions
With | Entry | #Exp. | IntAct | Notes |
|---|---|---|---|---|
| GRAP2 | O75791 | 5 | EBI-724478,EBI-740418 | |
| GRB2 | P62993 | 6 | EBI-724478,EBI-401755 |
Sequence annotation (Features)
| Feature key | Position(s) | Length | Description | Graphical view | Feature identifier | ||||||||||||||||||||||||||||||||||||||||||||
Molecule processing | |||||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Chain | 1 – 1636 | 1636 | Tyrosine-protein phosphatase non-receptor type 23 | PRO_0000094777 | |||||||||||||||||||||||||||||||||||||||||||||
Regions | |||||||||||||||||||||||||||||||||||||||||||||||||
| Domain | 8 – 394 | 387 | BRO1 | ||||||||||||||||||||||||||||||||||||||||||||||
| Repeat | 250 – 283 | 34 | TPR 1 | ||||||||||||||||||||||||||||||||||||||||||||||
| Repeat | 374 – 407 | 34 | TPR 2 | ||||||||||||||||||||||||||||||||||||||||||||||
| Repeat | 953 – 954 | 2 | 1 | ||||||||||||||||||||||||||||||||||||||||||||||
| Repeat | 955 – 956 | 2 | 2 | ||||||||||||||||||||||||||||||||||||||||||||||
| Repeat | 957 – 958 | 2 | 3 | ||||||||||||||||||||||||||||||||||||||||||||||
| Repeat | 959 – 960 | 2 | 4 | ||||||||||||||||||||||||||||||||||||||||||||||
| Repeat | 961 – 962 | 2 | 5 | ||||||||||||||||||||||||||||||||||||||||||||||
| Repeat | 963 – 964 | 2 | 6 | ||||||||||||||||||||||||||||||||||||||||||||||
| Domain | 1192 – 1452 | 261 | Tyrosine-protein phosphatase | ||||||||||||||||||||||||||||||||||||||||||||||
| Region | 770 – 1130 | 361 | His | ||||||||||||||||||||||||||||||||||||||||||||||
| Region | 953 – 964 | 12 | 6 X 2 AA approximate tandem repeats of P-Q | ||||||||||||||||||||||||||||||||||||||||||||||
| Coiled coil | 550 – 623 | 74 | Potential | ||||||||||||||||||||||||||||||||||||||||||||||
| Compositional bias | 716 – 1108 | 393 | Pro-rich | ||||||||||||||||||||||||||||||||||||||||||||||
| Compositional bias | 1509 – 1573 | 65 | Pro-rich | ||||||||||||||||||||||||||||||||||||||||||||||
Sites | |||||||||||||||||||||||||||||||||||||||||||||||||
| Active site | 1392 | 1 | Phosphocysteine intermediate By similarity | ||||||||||||||||||||||||||||||||||||||||||||||
Amino acid modifications | |||||||||||||||||||||||||||||||||||||||||||||||||
| Modified residue | 1123 | 1 | Phosphoserine Ref.11 Ref.12 | ||||||||||||||||||||||||||||||||||||||||||||||
| Modified residue | 1126 | 1 | Phosphoserine By similarity | ||||||||||||||||||||||||||||||||||||||||||||||
Natural variations | |||||||||||||||||||||||||||||||||||||||||||||||||
| Natural variant | 944 | 1 | A → T. Ref.6 Ref.8 Corresponds to variant rs6780013 [ dbSNP | Ensembl ]. | VAR_022682 | |||||||||||||||||||||||||||||||||||||||||||||
| Natural variant | 1099 | 1 | P → S in a lung cancer cell line; may be a common polymorphism. Ref.1 | VAR_022683 | |||||||||||||||||||||||||||||||||||||||||||||
Experimental info | |||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence conflict | 647 | 1 | L → G Ref.8 | ||||||||||||||||||||||||||||||||||||||||||||||
| Sequence conflict | 1087 | 1 | S → P Ref.8 | ||||||||||||||||||||||||||||||||||||||||||||||
Secondary structure | |||||||||||||||||||||||||||||||||||||||||||||||||
Helix Strand Turn | |||||||||||||||||||||||||||||||||||||||||||||||||
| Beta strand | 17 – 20 | 4 | |||||||||||||||||||||||||||||||||||||||||||||||
| Helix | 23 – 32 | 10 | |||||||||||||||||||||||||||||||||||||||||||||||
| Turn | 38 – 41 | 4 | |||||||||||||||||||||||||||||||||||||||||||||||
| Helix | 42 – 56 | 15 | |||||||||||||||||||||||||||||||||||||||||||||||
| Helix | 62 – 81 | 20 | |||||||||||||||||||||||||||||||||||||||||||||||
| Beta strand | 94 – 97 | 4 | |||||||||||||||||||||||||||||||||||||||||||||||
| Turn | 99 – 101 | 3 | |||||||||||||||||||||||||||||||||||||||||||||||
| Beta strand | 104 – 108 | 5 | |||||||||||||||||||||||||||||||||||||||||||||||
| Helix | 110 – 131 | 22 | |||||||||||||||||||||||||||||||||||||||||||||||
| Helix | 137 – 160 | 24 | |||||||||||||||||||||||||||||||||||||||||||||||
| Helix | 167 – 169 | 3 | |||||||||||||||||||||||||||||||||||||||||||||||
| Helix | 171 – 195 | 25 | |||||||||||||||||||||||||||||||||||||||||||||||
| Helix | 200 – 221 | 22 | |||||||||||||||||||||||||||||||||||||||||||||||
| Helix | 224 – 230 | 7 | |||||||||||||||||||||||||||||||||||||||||||||||
| Helix | 233 – 262 | 30 | |||||||||||||||||||||||||||||||||||||||||||||||
| Helix | 266 – 286 | 21 | |||||||||||||||||||||||||||||||||||||||||||||||
| Turn | 287 – 289 | 3 | |||||||||||||||||||||||||||||||||||||||||||||||
| Helix | 292 – 318 | 27 | |||||||||||||||||||||||||||||||||||||||||||||||
| Helix | 327 – 329 | 3 | |||||||||||||||||||||||||||||||||||||||||||||||
| Helix | 349 – 352 | 4 | |||||||||||||||||||||||||||||||||||||||||||||||
| Turn | 356 – 359 | 4 | |||||||||||||||||||||||||||||||||||||||||||||||
Sequences
| ||||||||||||||||||
References
| « Hide 'large scale' references | |
| [1] | "HD-PTP: a novel protein tyrosine phosphatase gene on human chromosome 3p21.3." Toyooka S., Ouchida M., Jitsumori Y., Tsukuda K., Sakai A., Nakamura A., Shimizu N., Shimizu K. Biochem. Biophys. Res. Commun. 278:671-678(2000) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA], VARIANT SER-1099, SUBCELLULAR LOCATION. Tissue: Stomach cancer. |
| [2] | "Cloning, chromosomal assignment and tissue expression of a novel human protein tyrosine phosphatase (PTP-TD14) gene." Qu X., Zhai Y., Wei H., Zhang C., Xing G., Lu C., Wang M., He F. Submitted (JUL-2000) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [MRNA]. Tissue: Liver. |
| [3] | "Complete sequencing and characterization of 21,243 full-length human cDNAs." Ota T., Suzuki Y., Nishikawa T., Otsuki T., Sugiyama T., Irie R., Wakamatsu A., Hayashi K., Sato H., Nagai K., Kimura K., Makita H., Sekine M., Obayashi M., Nishi T., Shibahara T., Tanaka T., Ishii S. Sugano S.Nat. Genet. 36:40-45(2004) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. Tissue: Cerebellum. |
| [4] | Mural R.J., Istrail S., Sutton G.G., Florea L., Halpern A.L., Mobarry C.M., Lippert R., Walenz B., Shatkay H., Dew I., Miller J.R., Flanigan M.J., Edwards N.J., Bolanos R., Fasulo D., Halldorsson B.V., Hannenhalli S., Turner R. Venter J.C.Submitted (JUL-2005) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. |
| [5] | "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)." The MGC Project Team Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. Tissue: Muscle, Ovary and Skin. |
| [6] | "Prediction of the coding sequences of unidentified human genes. XVII. The complete sequences of 100 new cDNA clones from brain which code for large proteins in vitro." Nagase T., Kikuno R., Ishikawa K., Hirosawa M., Ohara O. DNA Res. 7:143-150(2000) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 1-1383, VARIANT THR-944. Tissue: Brain. |
| [7] | "Construction of expression-ready cDNA clones for KIAA genes: manual curation of 330 KIAA cDNA clones." Nakajima D., Okazaki N., Yamakawa H., Kikuno R., Ohara O., Nagase T. DNA Res. 9:99-106(2002) [PubMed] [Europe PMC] [Abstract] Cited for: SEQUENCE REVISION. |
| [8] | "The full-ORF clone resource of the German cDNA consortium." Bechtel S., Rosenfelder H., Duda A., Schmidt C.P., Ernst U., Wellenreuther R., Mehrle A., Schuster C., Bahr A., Bloecker H., Heubner D., Hoerlein A., Michel G., Wedler H., Koehrer K., Ottenwaelder B., Poustka A., Wiemann S., Schupp I. BMC Genomics 8:399-399(2007) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 647-1636, VARIANT THR-944. Tissue: Brain. |
| [9] | "Cloning of human full-length CDSs in BD Creator(TM) system donor vector." Kalnine N., Chen X., Rolfs A., Halleck A., Hines L., Eisenstein S., Koundinya M., Raphael J., Moreira D., Kelley T., LaBaer J., Lin Y., Phelan M., Farmer A. Submitted (AUG-2003) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 1060-1636. |
| [10] | "Differential expression of PTPase RNAs resulting from K562 differentiation induced by PMA." Dayton M.A., Blanchard K.L. Submitted (JUL-1999) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [MRNA] OF 1351-1493. |
| [11] | "A quantitative atlas of mitotic phosphorylation." Dephoure N., Zhou C., Villen J., Beausoleil S.A., Bakalarski C.E., Elledge S.J., Gygi S.P. Proc. Natl. Acad. Sci. U.S.A. 105:10762-10767(2008) [PubMed] [Europe PMC] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-1123, MASS SPECTROMETRY. Tissue: Cervix carcinoma. |
| [12] | "Quantitative phosphoproteomic analysis of T cell receptor signaling reveals system-wide modulation of protein-protein interactions." Mayya V., Lundgren D.H., Hwang S.-I., Rezaul K., Wu L., Eng J.K., Rodionov V., Han D.K. Sci. Signal. 2:RA46-RA46(2009) [PubMed] [Europe PMC] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-1123, MASS SPECTROMETRY. Tissue: Leukemic T-cell. |
| [13] | "Functional genomic screen for modulators of ciliogenesis and cilium length." Kim J., Lee J.E., Heynen-Genel S., Suyama E., Ono K., Lee K., Ideker T., Aza-Blanc P., Gleeson J.G. Nature 464:1048-1051(2010) [PubMed] [Europe PMC] [Abstract] Cited for: FUNCTION, SUBCELLULAR LOCATION. |
| [14] | "Histidine domain-protein tyrosine phosphatase interacts with Grb2 and GrpL." Tanase C.A. PLoS ONE 5:E14339-E14339(2010) [PubMed] [Europe PMC] [Abstract] Cited for: INTERACTION WITH GRAP2 AND GRB2, SUBCELLULAR LOCATION. |
| [15] | "Quantitative phosphoproteomics reveals widespread full phosphorylation site occupancy during mitosis." Olsen J.V., Vermeulen M., Santamaria A., Kumar C., Miller M.L., Jensen L.J., Gnad F., Cox J., Jensen T.S., Nigg E.A., Brunak S., Mann M. Sci. Signal. 3:RA3-RA3(2010) [PubMed] [Europe PMC] [Abstract] Cited for: IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS]. Tissue: Cervix carcinoma. |
| [16] | "Initial characterization of the human central proteome." Burkard T.R., Planyavsky M., Kaupe I., Breitwieser F.P., Buerckstuemmer T., Bennett K.L., Superti-Furga G., Colinge J. BMC Syst. Biol. 5:17-17(2011) [PubMed] [Europe PMC] [Abstract] Cited for: IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS]. |
| [17] | "System-wide temporal characterization of the proteome and phosphoproteome of human embryonic stem cell differentiation." Rigbolt K.T., Prokhorova T.A., Akimov V., Henningsen J., Johansen P.T., Kratchmarova I., Kassem M., Mann M., Olsen J.V., Blagoev B. Sci. Signal. 4:RS3-RS3(2011) [PubMed] [Europe PMC] [Abstract] Cited for: IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS]. |
| [18] | "The Phe105 loop of Alix Bro1 domain plays a key role in HIV-1 release." Sette P., Mu R., Dussupt V., Jiang J., Snyder G., Smith P., Xiao T.S., Bouamr F. Structure 19:1485-1495(2011) [PubMed] [Europe PMC] [Abstract] Cited for: X-RAY CRYSTALLOGRAPHY (1.95 ANGSTROMS) OF 2-361. |
| + | Additional computationally mapped references. |
Cross-references
Sequence databases | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| EMBL GenBank DDBJ | AB025194 mRNA. Translation: BAB19280.1. AF290614 mRNA. Translation: AAK28025.1. AK289502 mRNA. Translation: BAF82191.1. CH471055 Genomic DNA. Translation: EAW64823.1. BC004881 mRNA. Translation: AAH04881.2. BC027711 mRNA. Translation: AAH27711.2. BC089042 mRNA. Translation: AAH89042.1. AB040904 mRNA. Translation: BAA95995.2. Different initiation. AL110210 mRNA. Translation: CAB53676.1. BT009758 mRNA. Translation: AAP88760.1. AF169350 mRNA. Translation: AAD50276.1. | ||||||||||||
| IPI | IPI00034006. | ||||||||||||
| PIR | T14756. | ||||||||||||
| RefSeq | NP_056281.1. NM_015466.2. | ||||||||||||
| UniGene | Hs.25524. | ||||||||||||
3D structure databases | |||||||||||||
| PDBe RCSB PDB PDBj |
| ||||||||||||
| ProteinModelPortal | Q9H3S7. | ||||||||||||
| ModBase | Search... | ||||||||||||
Protein-protein interaction databases | |||||||||||||
| DIP | DIP-29923N. | ||||||||||||
| IntAct | Q9H3S7. 7 interactions. | ||||||||||||
| MINT | MINT-1425077. | ||||||||||||
| STRING | 9606.ENSP00000265562. | ||||||||||||
PTM databases | |||||||||||||
| PhosphoSite | Q9H3S7. | ||||||||||||
Polymorphism databases | |||||||||||||
| DMDM | 68053318. | ||||||||||||
Proteomic databases | |||||||||||||
| PaxDb | Q9H3S7. | ||||||||||||
| PeptideAtlas | Q9H3S7. | ||||||||||||
| PRIDE | Q9H3S7. | ||||||||||||
Protocols and materials databases | |||||||||||||
| DNASU | 25930. | ||||||||||||
| StructuralBiologyKnowledgebase | Search... | ||||||||||||
Genome annotation databases | |||||||||||||
| Ensembl | ENST00000265562; ENSP00000265562; ENSG00000076201. | ||||||||||||
| GeneID | 25930. | ||||||||||||
| KEGG | hsa:25930. | ||||||||||||
| UCSC | uc003crf.1. human. | ||||||||||||
Organism-specific databases | |||||||||||||
| CTD | 25930. | ||||||||||||
| GeneCards | GC03P047397. | ||||||||||||
| HGNC | HGNC:14406. PTPN23. | ||||||||||||
| HPA | HPA016845. | ||||||||||||
| MIM | 606584. gene. | ||||||||||||
| neXtProt | NX_Q9H3S7. | ||||||||||||
| PharmGKB | PA33996. | ||||||||||||
| HUGE | Search... | ||||||||||||
| GenAtlas | Search... | ||||||||||||
Phylogenomic databases | |||||||||||||
| eggNOG | COG5599. | ||||||||||||
| HOVERGEN | HBG082231. | ||||||||||||
| InParanoid | Q9H3S7. | ||||||||||||
| KO | K01104. | ||||||||||||
| OMA | RFIQEVH. | ||||||||||||
| PhylomeDB | Q9H3S7. | ||||||||||||
Gene expression databases | |||||||||||||
| ArrayExpress | Q9H3S7. | ||||||||||||
| Bgee | Q9H3S7. | ||||||||||||
| CleanEx | HS_PTPN23. | ||||||||||||
| Genevestigator | Q9H3S7. | ||||||||||||
| GermOnline | ENSG00000076201. Homo sapiens. | ||||||||||||
Family and domain databases | |||||||||||||
| Gene3D | 1.25.40.280. 1 hit. | ||||||||||||
| InterPro | IPR025304. ALIX_V_dom. IPR004328. BRO1_dom. IPR000387. Tyr/Dual-sp_Pase. IPR016130. Tyr_Pase_AS. IPR000242. Tyr_Pase_rcpt/non-rcpt. [Graphical view] | ||||||||||||
| Pfam | PF13949. ALIX_LYPXL_bnd. 1 hit. PF03097. BRO1. 1 hit. PF00102. Y_phosphatase. 1 hit. [Graphical view] | ||||||||||||
| PRINTS | PR00700. PRTYPHPHTASE. | ||||||||||||
| SMART | SM01041. BRO1. 1 hit. SM00194. PTPc. 1 hit. [Graphical view] | ||||||||||||
| PROSITE | PS51180. BRO1. 1 hit. PS50005. TPR. False negative. PS50293. TPR_REGION. False negative. PS00383. TYR_PHOSPHATASE_1. 1 hit. PS50056. TYR_PHOSPHATASE_2. 1 hit. PS50055. TYR_PHOSPHATASE_PTP. 1 hit. [Graphical view] | ||||||||||||
| ProtoNet | Search... | ||||||||||||
Other | |||||||||||||
| ChiTaRS | PTPN23. human. | ||||||||||||
| EvolutionaryTrace | Q9H3S7. | ||||||||||||
| GenomeRNAi | 25930. | ||||||||||||
| NextBio | 47476. | ||||||||||||
| SOURCE | Search... | ||||||||||||
Entry information
| Entry name | PTN23_HUMAN | ||||||||
| Accession | Primary (citable) accession number: Q9H3S7 Secondary accession number(s): A8K0D7 Q9UMZ4 | ||||||||
| Entry history |
| ||||||||
| Entry status | Reviewed (UniProtKB/Swiss-Prot) | ||||||||
| Annotation program | Chordata Protein Annotation Program | ||||||||
| Disclaimer | Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care. | ||||||||
Relevant documents
| Human chromosome 3 Human chromosome 3: entries, gene names and cross-references to MIM |
| Human entries with polymorphisms or disease mutations List of human entries with polymorphisms or disease mutations |
| Human polymorphisms and disease mutations Index of human polymorphisms and disease mutations |
| MIM cross-references Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot |
| PDB cross-references Index of Protein Data Bank (PDB) cross-references |
| SIMILARITY comments Index of protein domains and families |

Clusters with
