Q9H2U2 (IPYR2_HUMAN) Reviewed, UniProtKB/Swiss-Prot
Last modified
May 1, 2013.
Version 108.
History...
Names·Attributes·General annotation·Ontologies·Alt products·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order
Names·Attributes·General annotation·Ontologies·Alt products·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize orderNames and origin
| Protein names | Recommended name: Inorganic pyrophosphatase 2, mitochondrial EC=3.6.1.1 Alternative name(s): Pyrophosphatase SID6-306 Pyrophosphate phospho-hydrolase 2 Short name=PPase 2 | ||||
| Gene names |
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| Organism | Homo sapiens (Human) [Reference proteome] | ||||
| Taxonomic identifier | 9606 [NCBI] | ||||
| Taxonomic lineage | Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Primates › Haplorrhini › Catarrhini › Hominidae › Homo![]() |
Protein attributes
| Sequence length | 334 AA. |
| Sequence status | Complete. |
| Sequence processing | The displayed sequence is further processed into a mature form. |
| Protein existence | Evidence at protein level |
General annotation (Comments)
| Catalytic activity | Diphosphate + H2O = 2 phosphate. |
| Cofactor | Magnesium By similarity. |
| Subunit structure | Homodimer By similarity. |
| Subcellular location | Mitochondrion Potential. |
| Tissue specificity | Detected in brain, gastric carcinoma, lung, ovary, skeletal muscle, umbilical cord blood and a cell line derived from kidney proximal tubule epithelium. Ref.9 |
| Sequence similarities | Belongs to the PPase family. |
| Sequence caution | The sequence AAF29088.1 differs from that shown. Reason: Erroneous initiation. Translation N-terminally extended. The sequence AAF29088.1 differs from that shown. Reason: Aberrant splicing. The sequence BAA84701.1 differs from that shown. Reason: Erroneous initiation. The sequence BAA91184.1 differs from that shown. Reason: Erroneous termination at position 59. Translated as Tyr. The sequence BAG59609.1 differs from that shown. Reason: Intron retention. The sequence CAB66590.2 differs from that shown. Reason: Erroneous initiation. Translation N-terminally extended. The sequence CAB66590.2 differs from that shown. Reason: Frameshift at position 75. |
Ontologies
| Keywords | |
|---|---|
| Cellular component | Mitochondrion |
| Coding sequence diversity | Alternative splicing Polymorphism |
| Domain | Transit peptide |
| Ligand | Magnesium Metal-binding |
| Molecular function | Hydrolase |
| PTM | Acetylation Phosphoprotein |
| Technical term | Complete proteome Direct protein sequencing Reference proteome |
| Gene Ontology (GO) | |
| Biological_process | diphosphate metabolic process Traceable author statement. Source: Reactome phosphate-containing compound metabolic processInferred from electronic annotation. Source: InterPro tRNA aminoacylation for protein translationTraceable author statement. Source: Reactome |
| Cellular_component | mitochondrial matrix Traceable author statement. Source: Reactome |
| Molecular_function | inorganic diphosphatase activity Traceable author statement. Source: Reactome magnesium ion bindingInferred from electronic annotation. Source: InterPro |
| Complete GO annotation... | |
Alternative products
| This entry describes 5 isoforms produced by alternative splicing. [Align] [Select] | ||||||
| Isoform 1 (identifier: Q9H2U2-1) This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry. | ||||||
| Isoform 2 (identifier: Q9H2U2-2) The sequence of this isoform differs from the canonical sequence as follows: 74-74: E → EDTEAQGIFIDLSKIW | ||||||
| Note: May be produced at very low levels due to a premature stop codon in the mRNA, leading to nonsense-mediated mRNA decay. | ||||||
| Isoform 3 (identifier: Q9H2U2-3) The sequence of this isoform differs from the canonical sequence as follows: 148-176: Missing. | ||||||
| Isoform 4 (identifier: Q9H2U2-4) The sequence of this isoform differs from the canonical sequence as follows: 53-53: K → N 54-219: Missing. | ||||||
| Note: No experimental confirmation available. | ||||||
| Isoform 5 (identifier: Q9H2U2-6) The sequence of this isoform differs from the canonical sequence as follows: 75-176: Missing. | ||||||
| Note: No experimental confirmation available. |
Sequence annotation (Features)
| Feature key | Position(s) | Length | Description | Graphical view | Feature identifier | ||||
Molecule processing | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| Transit peptide | 1 – 32 | 32 | Mitochondrion Ref.8 | ||||||
| Chain | 33 – 334 | 302 | Inorganic pyrophosphatase 2, mitochondrial | PRO_0000025411 | |||||
Sites | |||||||||
| Metal binding | 164 | 1 | Magnesium 1 By similarity | ||||||
| Metal binding | 169 | 1 | Magnesium 1 By similarity | ||||||
| Metal binding | 169 | 1 | Magnesium 2 By similarity | ||||||
| Metal binding | 201 | 1 | Magnesium 1 By similarity | ||||||
Amino acid modifications | |||||||||
| Modified residue | 261 | 1 | N6-acetyllysine Ref.12 | ||||||
| Modified residue | 317 | 1 | Phosphoserine Ref.13 Ref.15 | ||||||
Natural variations | |||||||||
| Alternative sequence | 53 | 1 | K → N in isoform 4. | VSP_011649 | |||||
| Alternative sequence | 54 – 219 | 166 | Missing in isoform 4. | VSP_011650 | |||||
| Alternative sequence | 74 | 1 | E → EDTEAQGIFIDLSKIW in isoform 2. | VSP_011651 | |||||
| Alternative sequence | 75 – 176 | 102 | Missing in isoform 5. | VSP_046256 | |||||
| Alternative sequence | 148 – 176 | 29 | Missing in isoform 3. | VSP_011652 | |||||
| Natural variant | 282 | 1 | K → N. Ref.3 Ref.6 Ref.7 Corresponds to variant rs13787 [ dbSNP | Ensembl ]. | VAR_019723 | |||||
Experimental info | |||||||||
| Sequence conflict | 11 | 1 | G → V in BAA84701. Ref.1 | ||||||
| Sequence conflict | 11 | 1 | G → V in AAG36781. Ref.2 | ||||||
| Sequence conflict | 19 | 1 | R → G in CAB66590. Ref.7 | ||||||
| Sequence conflict | 103 | 1 | N → K in CAB66590. Ref.7 | ||||||
| Sequence conflict | 241 | 1 | Y → C in CAB66590. Ref.7 | ||||||
| Sequence conflict | 288 | 1 | I → T in CAB66590. Ref.7 | ||||||
Sequences
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References
| « Hide 'large scale' references | |
| [1] | "Putative inorganic pyrophosphatase." Saito T., Hattori A., Miyajima N. Submitted (APR-1999) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 3). Tissue: Brain. |
| [2] | "Cloning of the mitochondrial inorganic pyrophosphatase 2 cDNA." Kanni L., Johansson M., Karlsson A. Submitted (DEC-1999) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1). |
| [3] | "Complete sequencing and characterization of 21,243 full-length human cDNAs." Ota T., Suzuki Y., Nishikawa T., Otsuki T., Sugiyama T., Irie R., Wakamatsu A., Hayashi K., Sato H., Nagai K., Kimura K., Makita H., Sekine M., Obayashi M., Nishi T., Shibahara T., Tanaka T., Ishii S. Sugano S.Nat. Genet. 36:40-45(2004) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1), VARIANT ASN-282. Tissue: Fibroblast and Gastric carcinoma. |
| [4] | "Generation and annotation of the DNA sequences of human chromosomes 2 and 4." Hillier L.W., Graves T.A., Fulton R.S., Fulton L.A., Pepin K.H., Minx P., Wagner-McPherson C., Layman D., Wylie K., Sekhon M., Becker M.C., Fewell G.A., Delehaunty K.D., Miner T.L., Nash W.E., Kremitzki C., Oddy L., Du H. Wilson R.K.Nature 434:724-731(2005) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. |
| [5] | "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)." The MGC Project Team Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 3), NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 3-334 (ISOFORM 4), NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 12-334 (ISOFORM 5). Tissue: Lung, Ovary and Skeletal muscle. |
| [6] | "Cloning and functional analysis of cDNAs with open reading frames for 300 previously undefined genes expressed in CD34+ hematopoietic stem/progenitor cells." Zhang Q.-H., Ye M., Wu X.-Y., Ren S.-X., Zhao M., Zhao C.-J., Fu G., Shen Y., Fan H.-Y., Lu G., Zhong M., Xu X.-R., Han Z.-G., Zhang J.-W., Tao J., Huang Q.-H., Zhou J., Hu G.-X. Chen Z.Genome Res. 10:1546-1560(2000) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 13-334 (ISOFORM 2), VARIANT ASN-282. Tissue: Umbilical cord blood. |
| [7] | "Towards a catalog of human genes and proteins: sequencing and analysis of 500 novel complete protein coding human cDNAs." Wiemann S., Weil B., Wellenreuther R., Gassenhuber J., Glassl S., Ansorge W., Boecher M., Bloecker H., Bauersachs S., Blum H., Lauber J., Duesterhoeft A., Beyer A., Koehrer K., Strack N., Mewes H.-W., Ottenwaelder B., Obermaier B. Poustka A.Genome Res. 11:422-435(2001) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 19-334 (ISOFORM 2), VARIANT ASN-282. Tissue: Brain. |
| [8] | "Exploring proteomes and analyzing protein processing by mass spectrometric identification of sorted N-terminal peptides." Gevaert K., Goethals M., Martens L., Van Damme J., Staes A., Thomas G.R., Vandekerckhove J. Nat. Biotechnol. 21:566-569(2003) [PubMed] [Europe PMC] [Abstract] Cited for: PROTEIN SEQUENCE OF 33-40. Tissue: Platelet. |
| [9] | "Hypothetical proteins with putative enzyme activity in human amnion, lymphocyte, bronchial epithelial and kidney cell lines." Afjehi-Sadat L., Krapfenbauer K., Slavc I., Fountoulakis M., Lubec G. Biochim. Biophys. Acta 1700:65-74(2004) [PubMed] [Europe PMC] [Abstract] Cited for: MASS SPECTROMETRY, TISSUE SPECIFICITY. |
| [10] | "A quantitative atlas of mitotic phosphorylation." Dephoure N., Zhou C., Villen J., Beausoleil S.A., Bakalarski C.E., Elledge S.J., Gygi S.P. Proc. Natl. Acad. Sci. U.S.A. 105:10762-10767(2008) [PubMed] [Europe PMC] [Abstract] Cited for: IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS]. Tissue: Cervix carcinoma. |
| [11] | "Quantitative phosphoproteomic analysis of T cell receptor signaling reveals system-wide modulation of protein-protein interactions." Mayya V., Lundgren D.H., Hwang S.-I., Rezaul K., Wu L., Eng J.K., Rodionov V., Han D.K. Sci. Signal. 2:RA46-RA46(2009) [PubMed] [Europe PMC] [Abstract] Cited for: IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS]. Tissue: Leukemic T-cell. |
| [12] | "Lysine acetylation targets protein complexes and co-regulates major cellular functions." Choudhary C., Kumar C., Gnad F., Nielsen M.L., Rehman M., Walther T.C., Olsen J.V., Mann M. Science 325:834-840(2009) [PubMed] [Europe PMC] [Abstract] Cited for: ACETYLATION [LARGE SCALE ANALYSIS] AT LYS-261, MASS SPECTROMETRY. |
| [13] | "Quantitative phosphoproteomics reveals widespread full phosphorylation site occupancy during mitosis." Olsen J.V., Vermeulen M., Santamaria A., Kumar C., Miller M.L., Jensen L.J., Gnad F., Cox J., Jensen T.S., Nigg E.A., Brunak S., Mann M. Sci. Signal. 3:RA3-RA3(2010) [PubMed] [Europe PMC] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-317, MASS SPECTROMETRY. Tissue: Cervix carcinoma. |
| [14] | "Initial characterization of the human central proteome." Burkard T.R., Planyavsky M., Kaupe I., Breitwieser F.P., Buerckstuemmer T., Bennett K.L., Superti-Furga G., Colinge J. BMC Syst. Biol. 5:17-17(2011) [PubMed] [Europe PMC] [Abstract] Cited for: IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS]. |
| [15] | "System-wide temporal characterization of the proteome and phosphoproteome of human embryonic stem cell differentiation." Rigbolt K.T., Prokhorova T.A., Akimov V., Henningsen J., Johansen P.T., Kratchmarova I., Kassem M., Mann M., Olsen J.V., Blagoev B. Sci. Signal. 4:RS3-RS3(2011) [PubMed] [Europe PMC] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-317, MASS SPECTROMETRY. |
Cross-references
Sequence databases | |
|---|---|
| EMBL GenBank DDBJ | AB026722 mRNA. Translation: BAA84701.1. Different initiation. AF217187 mRNA. Translation: AAG36781.1. AK000466 mRNA. Translation: BAA91184.1. Sequence problems. AK297096 mRNA. Translation: BAG59609.1. Sequence problems. AC004066 Genomic DNA. No translation available. AC106888 Genomic DNA. Translation: AAY41040.1. BC022803 mRNA. Translation: AAH22803.1. BC039462 mRNA. Translation: AAH39462.2. BC057219 mRNA. Translation: AAH57219.1. AF161473 mRNA. Translation: AAF29088.1. Sequence problems. AL136655 mRNA. Translation: CAB66590.2. Sequence problems. |
| IPI | IPI00301109. IPI00413014. IPI00470502. IPI00470503. IPI00470504. |
| RefSeq | NP_008834.3. NM_006903.4. NP_789842.2. NM_176866.2. NP_789843.2. NM_176867.3. NP_789845.1. NM_176869.2. |
| UniGene | Hs.654957. |
3D structure databases | |
| ProteinModelPortal | Q9H2U2. |
| ModBase | Search... |
Protein-protein interaction databases | |
| IntAct | Q9H2U2. 1 interaction. |
PTM databases | |
| PhosphoSite | Q9H2U2. |
Polymorphism databases | |
| DMDM | 116242592. |
2D gel databases | |
| OGP | Q9H2U2. |
Proteomic databases | |
| PaxDb | Q9H2U2. |
| PeptideAtlas | Q9H2U2. |
| PRIDE | Q9H2U2. |
Protocols and materials databases | |
| DNASU | 27068. |
| StructuralBiologyKnowledgebase | Search... |
Genome annotation databases | |
| Ensembl | ENST00000341695; ENSP00000343885; ENSG00000138777. ENST00000348706; ENSP00000313061; ENSG00000138777. ENST00000354147; ENSP00000340352; ENSG00000138777. ENST00000357415; ENSP00000349996; ENSG00000138777. ENST00000432483; ENSP00000389957; ENSG00000138777. ENST00000509031; ENSP00000423467; ENSG00000138777. |
| GeneID | 27068. |
| KEGG | hsa:27068. |
| UCSC | uc003hxl.3. human. uc003hxn.3. human. uc003hxp.3. human. |
Organism-specific databases | |
| CTD | 27068. |
| GeneCards | GC04M106290. |
| HGNC | HGNC:28883. PPA2. |
| HPA | HPA031671. |
| MIM | 609988. gene. |
| neXtProt | NX_Q9H2U2. |
| PharmGKB | PA142671159. |
| GenAtlas | Search... |
Phylogenomic databases | |
| eggNOG | COG0221. |
| HOVERGEN | HBG000491. |
| KO | K01507. |
| OMA | KSTHQCW. |
| OrthoDB | EOG4KPTBC. |
| PhylomeDB | Q9H2U2. |
Enzyme and pathway databases | |
| BRENDA | 3.6.1.1. 2681. |
| Reactome | REACT_21259. Pyrophosphate hydrolysis. REACT_71. Gene Expression. |
Gene expression databases | |
| ArrayExpress | Q9H2U2. |
| Bgee | Q9H2U2. |
| CleanEx | HS_PPA2. |
| Genevestigator | Q9H2U2. |
| GermOnline | ENSG00000138777. Homo sapiens. |
Family and domain databases | |
| Gene3D | 3.90.80.10. 1 hit. |
| InterPro | IPR008162. Pyrophosphatase. [Graphical view] |
| PANTHER | PTHR10286. PTHR10286. 1 hit. |
| Pfam | PF00719. Pyrophosphatase. 1 hit. [Graphical view] |
| SUPFAM | SSF50324. Pyrophosphatase. 1 hit. |
| PROSITE | PS00387. PPASE. 1 hit. [Graphical view] |
| ProtoNet | Search... |
Other | |
| ChiTaRS | PPA2. human. |
| GenomeRNAi | 27068. |
| NextBio | 35533887. |
| SOURCE | Search... |
Entry information
| Entry name | IPYR2_HUMAN | ||||||||
| Accession | Primary (citable) accession number: Q9H2U2 Secondary accession number(s): B4DLP7 Q9ULX0 | ||||||||
| Entry history |
| ||||||||
| Entry status | Reviewed (UniProtKB/Swiss-Prot) | ||||||||
| Annotation program | Chordata Protein Annotation Program | ||||||||
| Disclaimer | Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care. | ||||||||
Relevant documents
| Human chromosome 4 Human chromosome 4: entries, gene names and cross-references to MIM |
| Human entries with polymorphisms or disease mutations List of human entries with polymorphisms or disease mutations |
| Human polymorphisms and disease mutations Index of human polymorphisms and disease mutations |
| MIM cross-references Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot |
| SIMILARITY comments Index of protein domains and families |

Clusters with
