Q9H2U1 (DHX36_HUMAN) Reviewed, UniProtKB/Swiss-Prot
Last modified
May 1, 2013.
Version 107.
History...
Names·Attributes·General annotation·Ontologies·Alt products·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order
Names·Attributes·General annotation·Ontologies·Alt products·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize orderNames and origin
| Protein names | Recommended name: Probable ATP-dependent RNA helicase DHX36 EC=3.6.4.13 Alternative name(s): DEAH box protein 36 MLE-like protein 1 RNA helicase associated with AU-rich element ARE | ||||
| Gene names |
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| Organism | Homo sapiens (Human) [Reference proteome] | ||||
| Taxonomic identifier | 9606 [NCBI] | ||||
| Taxonomic lineage | Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Primates › Haplorrhini › Catarrhini › Hominidae › Homo![]() |
Protein attributes
| Sequence length | 1008 AA. |
| Sequence status | Complete. |
| Protein existence | Evidence at protein level |
General annotation (Comments)
| Function | Plays a role in degradation and deadenylation of mRNAs containing in their 3'-UTR the consensus ARE sequence element. May function in sex development and spermatogenesis. Ref.1 Ref.2 |
| Catalytic activity | ATP + H2O = ADP + phosphate. |
| Subunit structure | Interacts with EIF2C1, EIF2C2, PARN, EXOSC3 and EXOSC10. Ref.2 Ref.8 |
| Subcellular location | Nucleus. Cytoplasm. Note: Isoform 1 preferentially localized to the nucleus and isoform 2 localized to the cytoplasm. However, partitioning of cellular localization between the nucleus and cytoplasm is not exclusive, as isoform 1 was also detected in the cytoplasm. Both isoforms were excluded from nucleoli. Ref.2 |
| Tissue specificity | |
| Sequence similarities | Belongs to the DEAD box helicase family. DEAH subfamily. Contains 1 helicase ATP-binding domain. Contains 1 helicase C-terminal domain. |
Ontologies
| Keywords | |
|---|---|
| Cellular component | Cytoplasm Nucleus |
| Coding sequence diversity | Alternative splicing Polymorphism |
| Domain | Coiled coil |
| Ligand | ATP-binding Nucleotide-binding |
| Molecular function | Helicase Hydrolase |
| PTM | Acetylation |
| Technical term | Complete proteome Reference proteome |
| Gene Ontology (GO) | |
| Biological_process | response to exogenous dsRNA Inferred from electronic annotation. Source: Compara response to virusInferred from electronic annotation. Source: Compara |
| Cellular_component | cytoplasm Inferred from direct assay. Source: HPA nucleusInferred from direct assay. Source: HPA |
| Molecular_function | ATP binding Inferred from electronic annotation. Source: UniProtKB-KW ATP-dependent helicase activityInferred from electronic annotation. Source: InterPro double-stranded RNA bindingInferred from electronic annotation. Source: Compara |
| Complete GO annotation... | |
Alternative products
| This entry describes 3 isoforms produced by alternative splicing. [Align] [Select] | ||||||
| Isoform 1 (identifier: Q9H2U1-1) Also known as: Nuclear isoform; This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry. | ||||||
| Isoform 2 (identifier: Q9H2U1-2) Also known as: Cytoplasmic isoform; RHAU-delta 14; The sequence of this isoform differs from the canonical sequence as follows: 517-530: Missing. | ||||||
| Isoform 3 (identifier: Q9H2U1-3) The sequence of this isoform differs from the canonical sequence as follows: 737-765: Missing. | ||||||
| Note: No experimental confirmation available. |
Sequence annotation (Features)
| Feature key | Position(s) | Length | Description | Graphical view | Feature identifier | ||||
Molecule processing | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| Chain | 1 – 1008 | 1008 | Probable ATP-dependent RNA helicase DHX36 | PRO_0000247530 | |||||
Regions | |||||||||
| Domain | 217 – 387 | 171 | Helicase ATP-binding | ||||||
| Domain | 477 – 647 | 171 | Helicase C-terminal | ||||||
| Nucleotide binding | 230 – 237 | 8 | ATP By similarity | ||||||
| Coiled coil | 72 – 157 | 86 | Potential | ||||||
| Motif | 334 – 337 | 4 | DEAH box | ||||||
| Motif | 517 – 528 | 12 | Nuclear localization signal | ||||||
| Compositional bias | 10 – 63 | 54 | Gly-rich | ||||||
Amino acid modifications | |||||||||
| Modified residue | 947 | 1 | N6-acetyllysine Ref.11 | ||||||
Natural variations | |||||||||
| Alternative sequence | 517 – 530 | 14 | Missing in isoform 2. | VSP_020006 | |||||
| Alternative sequence | 737 – 765 | 29 | Missing in isoform 3. | VSP_020007 | |||||
| Natural variant | 151 | 1 | E → K. Corresponds to variant rs1058299 [ dbSNP | Ensembl ]. | VAR_027140 | |||||
| Natural variant | 416 | 1 | S → C. Ref.1 Ref.2 Ref.6 Corresponds to variant rs9438 [ dbSNP | Ensembl ]. | VAR_027141 | |||||
| Natural variant | 583 | 1 | I → N. Ref.6 Corresponds to variant rs17853513 [ dbSNP | Ensembl ]. | VAR_027142 | |||||
Experimental info | |||||||||
| Mutagenesis | 335 | 1 | E → A: Loss of ATPase activity resulting in loss of mRNA deadenylation and decay. Ref.2 | ||||||
Sequences
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References
| « Hide 'large scale' references | |
| [1] | "Molecular cloning and characterization of human DDX36 and mouse Ddx36 genes, new members of the DEAD/H box superfamily." Fu J.-J., Li L.-Y., Lu G.-X. Sheng Wu Hua Xue Yu Sheng Wu Wu Li Xue Bao 34:655-661(2002) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1), FUNCTION, TISSUE SPECIFICITY, VARIANT CYS-416. Tissue: Brain. |
| [2] | "Facilitation of mRNA deadenylation and decay by the exosome-bound, DExH protein RHAU." Tran H., Schilling M., Wirbelauer C., Hess D., Nagamine Y. Mol. Cell 13:101-111(2004) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORMS 1 AND 2), FUNCTION, SUBCELLULAR LOCATION, ALTERNATIVE SPLICING, TISSUE SPECIFICITY, INTERACTION WITH PARN; EXOSC3 AND EXOSC10, MUTAGENESIS OF GLU-335, VARIANT CYS-416. |
| [3] | "Complete sequencing and characterization of 21,243 full-length human cDNAs." Ota T., Suzuki Y., Nishikawa T., Otsuki T., Sugiyama T., Irie R., Wakamatsu A., Hayashi K., Sato H., Nagai K., Kimura K., Makita H., Sekine M., Obayashi M., Nishi T., Shibahara T., Tanaka T., Ishii S. Sugano S.Nat. Genet. 36:40-45(2004) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1). Tissue: Testis. |
| [4] | "The DNA sequence, annotation and analysis of human chromosome 3." Muzny D.M., Scherer S.E., Kaul R., Wang J., Yu J., Sudbrak R., Buhay C.J., Chen R., Cree A., Ding Y., Dugan-Rocha S., Gill R., Gunaratne P., Harris R.A., Hawes A.C., Hernandez J., Hodgson A.V., Hume J. Gibbs R.A.Nature 440:1194-1198(2006) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. |
| [5] | Mural R.J., Istrail S., Sutton G.G., Florea L., Halpern A.L., Mobarry C.M., Lippert R., Walenz B., Shatkay H., Dew I., Miller J.R., Flanigan M.J., Edwards N.J., Bolanos R., Fasulo D., Halldorsson B.V., Hannenhalli S., Turner R. Venter J.C.Submitted (SEP-2005) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. |
| [6] | "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)." The MGC Project Team Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 3), VARIANTS CYS-416 AND ASN-583. Tissue: Testis. |
| [7] | "Prediction of the coding sequences of unidentified human genes. XVII. The complete sequences of 100 new cDNA clones from brain which code for large proteins in vitro." Nagase T., Kikuno R., Ishikawa K., Hirosawa M., Ohara O. DNA Res. 7:143-150(2000) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 157-1008 (ISOFORM 1). Tissue: Brain. |
| [8] | "Proteomic and functional analysis of Argonaute-containing mRNA-protein complexes in human cells." Hoeck J., Weinmann L., Ender C., Ruedel S., Kremmer E., Raabe M., Urlaub H., Meister G. EMBO Rep. 8:1052-1060(2007) [PubMed] [Europe PMC] [Abstract] Cited for: INTERACTION WITH EIF2C1 AND EIF2C2. |
| [9] | "A quantitative atlas of mitotic phosphorylation." Dephoure N., Zhou C., Villen J., Beausoleil S.A., Bakalarski C.E., Elledge S.J., Gygi S.P. Proc. Natl. Acad. Sci. U.S.A. 105:10762-10767(2008) [PubMed] [Europe PMC] [Abstract] Cited for: IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS]. Tissue: Cervix carcinoma. |
| [10] | "Quantitative phosphoproteomic analysis of T cell receptor signaling reveals system-wide modulation of protein-protein interactions." Mayya V., Lundgren D.H., Hwang S.-I., Rezaul K., Wu L., Eng J.K., Rodionov V., Han D.K. Sci. Signal. 2:RA46-RA46(2009) [PubMed] [Europe PMC] [Abstract] Cited for: IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS]. Tissue: Leukemic T-cell. |
| [11] | "Lysine acetylation targets protein complexes and co-regulates major cellular functions." Choudhary C., Kumar C., Gnad F., Nielsen M.L., Rehman M., Walther T.C., Olsen J.V., Mann M. Science 325:834-840(2009) [PubMed] [Europe PMC] [Abstract] Cited for: ACETYLATION [LARGE SCALE ANALYSIS] AT LYS-947, MASS SPECTROMETRY. |
| [12] | "Initial characterization of the human central proteome." Burkard T.R., Planyavsky M., Kaupe I., Breitwieser F.P., Buerckstuemmer T., Bennett K.L., Superti-Furga G., Colinge J. BMC Syst. Biol. 5:17-17(2011) [PubMed] [Europe PMC] [Abstract] Cited for: IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS]. |
| + | Additional computationally mapped references. |
Cross-references
Sequence databases | |
|---|---|
| EMBL GenBank DDBJ | AF217190 mRNA. Translation: AAG36783.1. AJ577133 mRNA. Translation: CAE11802.1. AJ577134 mRNA. Translation: CAE11803.1. AK314435 mRNA. Translation: BAG37047.1. AC018452 Genomic DNA. No translation available. AC134026 Genomic DNA. No translation available. CH471052 Genomic DNA. Translation: EAW78761.1. BC036035 mRNA. Translation: AAH36035.1. AB040921 mRNA. Translation: BAA96012.1. |
| IPI | IPI00027415. IPI00217760. IPI00784170. |
| PIR | D56236. |
| RefSeq | NP_001107869.1. NM_001114397.1. NP_065916.2. NM_020865.2. |
| UniGene | Hs.446270. |
3D structure databases | |
| ProteinModelPortal | Q9H2U1. |
| SMR | Q9H2U1. Positions 192-911. |
| ModBase | Search... |
Protein-protein interaction databases | |
| IntAct | Q9H2U1. 5 interactions. |
| MINT | MINT-3066797. |
| STRING | 9606.ENSP00000417078. |
PTM databases | |
| PhosphoSite | Q9H2U1. |
Polymorphism databases | |
| DMDM | 74762733. |
Proteomic databases | |
| PaxDb | Q9H2U1. |
| PRIDE | Q9H2U1. |
Protocols and materials databases | |
| DNASU | 170506. |
| StructuralBiologyKnowledgebase | Search... |
Genome annotation databases | |
| Ensembl | ENST00000308361; ENSP00000309296; ENSG00000174953. ENST00000329463; ENSP00000330113; ENSG00000174953. ENST00000496811; ENSP00000417078; ENSG00000174953. |
| GeneID | 170506. |
| KEGG | hsa:170506. |
| UCSC | uc003ezy.4. human. uc003ezz.4. human. uc010hvq.3. human. |
Organism-specific databases | |
| CTD | 170506. |
| GeneCards | GC03M153990. |
| HGNC | HGNC:14410. DHX36. |
| HPA | HPA035399. |
| MIM | 612767. gene. |
| neXtProt | NX_Q9H2U1. |
| PharmGKB | PA27223. |
| HUGE | Search... |
| GenAtlas | Search... |
Phylogenomic databases | |
| eggNOG | COG1643. |
| HOGENOM | HOG000247063. |
| HOVERGEN | HBG081438. |
| InParanoid | Q9H2U1. |
| KO | K14442. |
| OMA | RIRNRSY. |
| OrthoDB | EOG4K6G3J. |
| PhylomeDB | Q9H2U1. |
Gene expression databases | |
| ArrayExpress | Q9H2U1. |
| Bgee | Q9H2U1. |
| CleanEx | HS_DHX36. |
| Genevestigator | Q9H2U1. |
| GermOnline | ENSG00000174953. Homo sapiens. |
Family and domain databases | |
| InterPro | IPR011545. DNA/RNA_helicase_DEAD/DEAH_N. IPR002464. DNA/RNA_helicase_DEAH_CS. IPR011709. DUF1605. IPR007502. Helicase-assoc_dom. IPR014001. Helicase_ATP-bd. IPR001650. Helicase_C. [Graphical view] |
| Pfam | PF00270. DEAD. 1 hit. PF04408. HA2. 1 hit. PF00271. Helicase_C. 1 hit. PF07717. OB_NTP_bind. 1 hit. [Graphical view] |
| SMART | SM00487. DEXDc. 1 hit. SM00847. HA2. 1 hit. SM00490. HELICc. 1 hit. [Graphical view] |
| PROSITE | PS00690. DEAH_ATP_HELICASE. 1 hit. PS51192. HELICASE_ATP_BIND_1. 1 hit. PS51194. HELICASE_CTER. 1 hit. [Graphical view] |
| ProtoNet | Search... |
Other | |
| GenomeRNAi | 170506. |
| NextBio | 88959. |
| SOURCE | Search... |
Entry information
| Entry name | DHX36_HUMAN | ||||||||
| Accession | Primary (citable) accession number: Q9H2U1 Secondary accession number(s): B2RB00 Q9P240 | ||||||||
| Entry history |
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| Entry status | Reviewed (UniProtKB/Swiss-Prot) | ||||||||
| Annotation program | Chordata Protein Annotation Program | ||||||||
| Disclaimer | Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care. | ||||||||
Relevant documents
| Human chromosome 3 Human chromosome 3: entries, gene names and cross-references to MIM |
| Human entries with polymorphisms or disease mutations List of human entries with polymorphisms or disease mutations |
| Human polymorphisms and disease mutations Index of human polymorphisms and disease mutations |
| MIM cross-references Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot |
| SIMILARITY comments Index of protein domains and families |

Clusters with
