Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein

Leucine-rich repeat-containing protein C10orf11

Gene

C10orf11

Organism
Homo sapiens (Human)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at protein leveli

Functioni

Required for melanocyte differentiation.1 Publication

GO - Biological processi

  1. melanocyte differentiation Source: UniProtKB
Complete GO annotation...

Keywords - Biological processi

Differentiation

Names & Taxonomyi

Protein namesi
Recommended name:
Leucine-rich repeat-containing protein C10orf11
Gene namesi
ORF Names:CDA017
OrganismiHomo sapiens (Human)
Taxonomic identifieri9606 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo
ProteomesiUP000005640: Chromosome 10

Organism-specific databases

HGNCiHGNC:23405. C10orf11.

Pathology & Biotechi

Involvement in diseasei

Albinism, oculocutaneous, 71 Publication

The disease is caused by mutations affecting the gene represented in this entry.

Disease descriptionA disorder of pigmentation characterized by reduced biosynthesis of melanin in the skin, hair and eyes. Patients show reduced or lacking pigmentation associated with classic albinism ocular abnormalities, including decreased visual acuity, macular hypoplasia, optic dysplasia, atypical choroidal vessels, and nystagmus.

See also OMIM:615179

Keywords - Diseasei

Albinism

Organism-specific databases

MIMi615179. phenotype.
Orphaneti352745. Oculocutaneous albinism type 7.
PharmGKBiPA134899373.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 198198Leucine-rich repeat-containing protein C10orf11PRO_0000089781Add
BLAST

Proteomic databases

MaxQBiQ9H2I8.
PaxDbiQ9H2I8.
PRIDEiQ9H2I8.

PTM databases

PhosphoSiteiQ9H2I8.

Expressioni

Tissue specificityi

In the embryo, expressed in melanoblasts. In the fetus, expressed in melanocytes. Not detected in retinal pigment epithelial cells.1 Publication

Gene expression databases

BgeeiQ9H2I8.
CleanExiHS_C10orf11.
ExpressionAtlasiQ9H2I8. baseline and differential.
GenevestigatoriQ9H2I8.

Organism-specific databases

HPAiHPA047446.
HPA050419.

Interactioni

Protein-protein interaction databases

STRINGi9606.ENSP00000361577.

Structurei

3D structure databases

ProteinModelPortaliQ9H2I8.
SMRiQ9H2I8. Positions 16-131.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Repeati2 – 2221LRR 1Add
BLAST
Repeati26 – 4722LRR 2Add
BLAST
Repeati48 – 6922LRR 3Add
BLAST
Repeati75 – 9521LRR 4Add
BLAST
Domaini96 – 13439LRRCTAdd
BLAST

Sequence similaritiesi

Contains 4 LRR (leucine-rich) repeats.Curated
Contains 1 LRRCT domain.Curated

Keywords - Domaini

Leucine-rich repeat, Repeat

Phylogenomic databases

eggNOGiNOG121670.
GeneTreeiENSGT00390000006581.
HOGENOMiHOG000293232.
HOVERGENiHBG050965.
InParanoidiQ9H2I8.
OMAiYIYYGKH.
PhylomeDBiQ9H2I8.
TreeFamiTF328882.

Family and domain databases

InterProiIPR001611. Leu-rich_rpt.
[Graphical view]
PROSITEiPS51450. LRR. 3 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q9H2I8-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MEKYLSLSGN HSSNKRSLEG LSAFRSLEEL ILDNNQLGDD LVLPGLPRLH
60 70 80 90 100
TLTLNKNRIT DLENLLDHLA EVTPALEYLS LLGNVACPNE LVSLEKDEED
110 120 130 140 150
YKRYRCFVLY KLPNLKFLDA QKVTRQEREE ALVRGVFMKV VKPKASSEDV
160 170 180 190
ASSPERHYTP LPSASRELTS HQGVLGKCRY VYYGKNSEGN RFIRDDQL
Length:198
Mass (Da):22,568
Last modified:March 1, 2001 - v1
Checksum:i46C5A791B179AEDF
GO

Natural variant

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Natural varianti153 – 1531S → F.
Corresponds to variant rs35349706 [ dbSNP | Ensembl ].
VAR_033686

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF267860 mRNA. Translation: AAG44729.1.
AL731568
, AC012047, AC013286, AC024603 Genomic DNA. Translation: CAH73047.1.
CH471083 Genomic DNA. Translation: EAW54585.1.
CCDSiCCDS7351.1.
RefSeqiNP_114413.1. NM_032024.3.
UniGeneiHs.118161.
Hs.690504.

Genome annotation databases

EnsembliENST00000372499; ENSP00000361577; ENSG00000148655.
GeneIDi83938.
KEGGihsa:83938.
UCSCiuc001jxi.3. human.

Polymorphism databases

DMDMi46576650.

Keywords - Coding sequence diversityi

Polymorphism

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF267860 mRNA. Translation: AAG44729.1.
AL731568
, AC012047, AC013286, AC024603 Genomic DNA. Translation: CAH73047.1.
CH471083 Genomic DNA. Translation: EAW54585.1.
CCDSiCCDS7351.1.
RefSeqiNP_114413.1. NM_032024.3.
UniGeneiHs.118161.
Hs.690504.

3D structure databases

ProteinModelPortaliQ9H2I8.
SMRiQ9H2I8. Positions 16-131.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi9606.ENSP00000361577.

PTM databases

PhosphoSiteiQ9H2I8.

Polymorphism databases

DMDMi46576650.

Proteomic databases

MaxQBiQ9H2I8.
PaxDbiQ9H2I8.
PRIDEiQ9H2I8.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENST00000372499; ENSP00000361577; ENSG00000148655.
GeneIDi83938.
KEGGihsa:83938.
UCSCiuc001jxi.3. human.

Organism-specific databases

CTDi83938.
GeneCardsiGC10P077360.
H-InvDBHIX0020866.
HGNCiHGNC:23405. C10orf11.
HPAiHPA047446.
HPA050419.
MIMi614537. gene.
615179. phenotype.
neXtProtiNX_Q9H2I8.
Orphaneti352745. Oculocutaneous albinism type 7.
PharmGKBiPA134899373.
GenAtlasiSearch...

Phylogenomic databases

eggNOGiNOG121670.
GeneTreeiENSGT00390000006581.
HOGENOMiHOG000293232.
HOVERGENiHBG050965.
InParanoidiQ9H2I8.
OMAiYIYYGKH.
PhylomeDBiQ9H2I8.
TreeFamiTF328882.

Miscellaneous databases

ChiTaRSiC10orf11. human.
GenomeRNAii83938.
NextBioi73065.
SOURCEiSearch...

Gene expression databases

BgeeiQ9H2I8.
CleanExiHS_C10orf11.
ExpressionAtlasiQ9H2I8. baseline and differential.
GenevestigatoriQ9H2I8.

Family and domain databases

InterProiIPR001611. Leu-rich_rpt.
[Graphical view]
PROSITEiPS51450. LRR. 3 hits.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "A novel gene expressed in human pheochromocytoma."
    Xu X., Yang Y., Gao G., Xiao H., Chen Z., Han Z.
    Submitted (MAY-2000) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Tissue: Pheochromocytoma.
  2. "The DNA sequence and comparative analysis of human chromosome 10."
    Deloukas P., Earthrowl M.E., Grafham D.V., Rubenfield M., French L., Steward C.A., Sims S.K., Jones M.C., Searle S., Scott C., Howe K., Hunt S.E., Andrews T.D., Gilbert J.G.R., Swarbreck D., Ashurst J.L., Taylor A., Battles J.
    , Bird C.P., Ainscough R., Almeida J.P., Ashwell R.I.S., Ambrose K.D., Babbage A.K., Bagguley C.L., Bailey J., Banerjee R., Bates K., Beasley H., Bray-Allen S., Brown A.J., Brown J.Y., Burford D.C., Burrill W., Burton J., Cahill P., Camire D., Carter N.P., Chapman J.C., Clark S.Y., Clarke G., Clee C.M., Clegg S., Corby N., Coulson A., Dhami P., Dutta I., Dunn M., Faulkner L., Frankish A., Frankland J.A., Garner P., Garnett J., Gribble S., Griffiths C., Grocock R., Gustafson E., Hammond S., Harley J.L., Hart E., Heath P.D., Ho T.P., Hopkins B., Horne J., Howden P.J., Huckle E., Hynds C., Johnson C., Johnson D., Kana A., Kay M., Kimberley A.M., Kershaw J.K., Kokkinaki M., Laird G.K., Lawlor S., Lee H.M., Leongamornlert D.A., Laird G., Lloyd C., Lloyd D.M., Loveland J., Lovell J., McLaren S., McLay K.E., McMurray A., Mashreghi-Mohammadi M., Matthews L., Milne S., Nickerson T., Nguyen M., Overton-Larty E., Palmer S.A., Pearce A.V., Peck A.I., Pelan S., Phillimore B., Porter K., Rice C.M., Rogosin A., Ross M.T., Sarafidou T., Sehra H.K., Shownkeen R., Skuce C.D., Smith M., Standring L., Sycamore N., Tester J., Thorpe A., Torcasso W., Tracey A., Tromans A., Tsolas J., Wall M., Walsh J., Wang H., Weinstock K., West A.P., Willey D.L., Whitehead S.L., Wilming L., Wray P.W., Young L., Chen Y., Lovering R.C., Moschonas N.K., Siebert R., Fechtel K., Bentley D., Durbin R.M., Hubbard T., Doucette-Stamm L., Beck S., Smith D.R., Rogers J.
    Nature 429:375-381(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
  3. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
  4. Cited for: IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
    Tissue: Platelet.
  5. "Mutations in c10orf11, a melanocyte-differentiation gene, cause autosomal-recessive albinism."
    Groenskov K., Dooley C.M., Oestergaard E., Kelsh R.N., Hansen L., Levesque M.P., Vilhelmsen K., Moellgaard K., Stemple D.L., Rosenberg T.
    Am. J. Hum. Genet. 92:415-421(2013) [PubMed] [Europe PMC] [Abstract]
    Cited for: FUNCTION, TISSUE SPECIFICITY, INVOLVEMENT IN OCA7.

Entry informationi

Entry nameiCJ011_HUMAN
AccessioniPrimary (citable) accession number: Q9H2I8
Secondary accession number(s): B1AVW6
Entry historyi
Integrated into UniProtKB/Swiss-Prot: April 26, 2004
Last sequence update: March 1, 2001
Last modified: January 7, 2015
This is version 87 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Human chromosome 10
    Human chromosome 10: entries, gene names and cross-references to MIM
  2. Human entries with polymorphisms or disease mutations
    List of human entries with polymorphisms or disease mutations
  3. Human polymorphisms and disease mutations
    Index of human polymorphisms and disease mutations
  4. MIM cross-references
    Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot
  5. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.