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Protein

Homeobox protein Hox-D1

Gene

HOXD1

Organism
Homo sapiens (Human)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at transcript leveli

Functioni

Sequence-specific transcription factor which is part of a developmental regulatory system that provides cells with specific positional identities on the anterior-posterior axis. Acts on the anterior body structures.

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
DNA bindingi229 – 28860HomeoboxPROSITE-ProRule annotationAdd
BLAST

GO - Molecular functioni

  1. sequence-specific DNA binding Source: InterPro

GO - Biological processi

  1. embryonic skeletal system development Source: Ensembl
  2. neuron differentiation Source: Ensembl
  3. regulation of transcription, DNA-templated Source: UniProtKB-KW
  4. sensory perception of pain Source: Ensembl
  5. transcription, DNA-templated Source: UniProtKB-KW
Complete GO annotation...

Keywords - Molecular functioni

Developmental protein

Keywords - Biological processi

Transcription, Transcription regulation

Keywords - Ligandi

DNA-binding

Names & Taxonomyi

Protein namesi
Recommended name:
Homeobox protein Hox-D1
Alternative name(s):
Homeobox protein Hox-GG
Gene namesi
Name:HOXD1
Synonyms:HOX4, HOX4G
OrganismiHomo sapiens (Human)
Taxonomic identifieri9606 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo
ProteomesiUP000005640 Componenti: Chromosome 2

Organism-specific databases

HGNCiHGNC:5132. HOXD1.

Subcellular locationi

GO - Cellular componenti

  1. nucleus Source: UniProtKB-SubCell
Complete GO annotation...

Keywords - Cellular componenti

Nucleus

Pathology & Biotechi

Organism-specific databases

PharmGKBiPA29406.

Polymorphism and mutation databases

DMDMi17378648.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 328328Homeobox protein Hox-D1PRO_0000200201Add
BLAST

Proteomic databases

PaxDbiQ9GZZ0.
PeptideAtlasiQ9GZZ0.
PRIDEiQ9GZZ0.

Expressioni

Gene expression databases

BgeeiQ9GZZ0.
CleanExiHS_HOXD1.
GenevestigatoriQ9GZZ0.

Interactioni

Protein-protein interaction databases

BioGridi109471. 1 interaction.
STRINGi9606.ENSP00000328598.

Structurei

3D structure databases

ProteinModelPortaliQ9GZZ0.
SMRiQ9GZZ0. Positions 204-290.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Motif

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Motifi204 – 2096Antp-type hexapeptide

Sequence similaritiesi

Belongs to the Antp homeobox family. Labial subfamily.Curated
Contains 1 homeobox DNA-binding domain.PROSITE-ProRule annotation

Keywords - Domaini

Homeobox

Phylogenomic databases

eggNOGiNOG314488.
GeneTreeiENSGT00760000118940.
HOGENOMiHOG000247020.
HOVERGENiHBG006089.
InParanoidiQ9GZZ0.
KOiK09301.
OMAiYLEYVSC.
OrthoDBiEOG7PK91P.
PhylomeDBiQ9GZZ0.
TreeFamiTF317730.

Family and domain databases

Gene3Di1.10.10.60. 1 hit.
InterProiIPR017970. Homeobox_CS.
IPR001356. Homeobox_dom.
IPR020479. Homeobox_metazoa.
IPR009057. Homeodomain-like.
[Graphical view]
PfamiPF00046. Homeobox. 1 hit.
[Graphical view]
PRINTSiPR00024. HOMEOBOX.
SMARTiSM00389. HOX. 1 hit.
[Graphical view]
SUPFAMiSSF46689. SSF46689. 1 hit.
PROSITEiPS00027. HOMEOBOX_1. 1 hit.
PS50071. HOMEOBOX_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q9GZZ0-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSSYLEYVSC SSSGGVGGDV LSLAPKFCRS DARPVALQPA FPLGNGDGAF
60 70 80 90 100
VSCLPLAAAR PSPSPPAAPA RPSVPPPAAP QYAQCTLEGA YEPGAAPAAA
110 120 130 140 150
AGGADYGFLG SGPAYDFPGV LGRAADDGGS HVHYATSAVF SGGGSFLLSG
160 170 180 190 200
QVDYAAFGEP GPFPACLKAS ADGHPGAFQT ASPAPGTYPK SVSPASGLPA
210 220 230 240 250
AFSTFEWMKV KRNASKKGKL AEYGAASPSS AIRTNFSTKQ LTELEKEFHF
260 270 280 290 300
NKYLTRARRI EIANCLHLND TQVKIWFQNR RMKQKKRERE GLLATAIPVA
310 320
PLQLPLSGTT PTKFIKNPGS PSQSQEPS
Length:328
Mass (Da):34,093
Last modified:March 1, 2001 - v1
Checksum:i1B9EBBF4E2DA0301
GO

Natural variant

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Natural varianti296 – 2961A → T.
Corresponds to variant rs6710142 [ dbSNP | Ensembl ].
VAR_034003

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF202118 Genomic DNA. Translation: AAG29939.1.
AF241528 mRNA. Translation: AAG44444.1.
AK314120 mRNA. Translation: BAG36811.1.
CH471058 Genomic DNA. Translation: EAX11080.1.
CCDSiCCDS2271.1.
RefSeqiNP_078777.1. NM_024501.2.
UniGeneiHs.83465.

Genome annotation databases

EnsembliENST00000331462; ENSP00000328598; ENSG00000128645.
GeneIDi3231.
KEGGihsa:3231.
UCSCiuc002ukv.5. human.

Keywords - Coding sequence diversityi

Polymorphism

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF202118 Genomic DNA. Translation: AAG29939.1.
AF241528 mRNA. Translation: AAG44444.1.
AK314120 mRNA. Translation: BAG36811.1.
CH471058 Genomic DNA. Translation: EAX11080.1.
CCDSiCCDS2271.1.
RefSeqiNP_078777.1. NM_024501.2.
UniGeneiHs.83465.

3D structure databases

ProteinModelPortaliQ9GZZ0.
SMRiQ9GZZ0. Positions 204-290.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi109471. 1 interaction.
STRINGi9606.ENSP00000328598.

Polymorphism and mutation databases

DMDMi17378648.

Proteomic databases

PaxDbiQ9GZZ0.
PeptideAtlasiQ9GZZ0.
PRIDEiQ9GZZ0.

Protocols and materials databases

DNASUi3231.
Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENST00000331462; ENSP00000328598; ENSG00000128645.
GeneIDi3231.
KEGGihsa:3231.
UCSCiuc002ukv.5. human.

Organism-specific databases

CTDi3231.
GeneCardsiGC02P177053.
HGNCiHGNC:5132. HOXD1.
MIMi142987. gene.
neXtProtiNX_Q9GZZ0.
PharmGKBiPA29406.
GenAtlasiSearch...

Phylogenomic databases

eggNOGiNOG314488.
GeneTreeiENSGT00760000118940.
HOGENOMiHOG000247020.
HOVERGENiHBG006089.
InParanoidiQ9GZZ0.
KOiK09301.
OMAiYLEYVSC.
OrthoDBiEOG7PK91P.
PhylomeDBiQ9GZZ0.
TreeFamiTF317730.

Miscellaneous databases

ChiTaRSiHOXD1. human.
GeneWikiiHOXD1.
GenomeRNAii3231.
NextBioi12857.
PROiQ9GZZ0.
SOURCEiSearch...

Gene expression databases

BgeeiQ9GZZ0.
CleanExiHS_HOXD1.
GenevestigatoriQ9GZZ0.

Family and domain databases

Gene3Di1.10.10.60. 1 hit.
InterProiIPR017970. Homeobox_CS.
IPR001356. Homeobox_dom.
IPR020479. Homeobox_metazoa.
IPR009057. Homeodomain-like.
[Graphical view]
PfamiPF00046. Homeobox. 1 hit.
[Graphical view]
PRINTSiPR00024. HOMEOBOX.
SMARTiSM00389. HOX. 1 hit.
[Graphical view]
SUPFAMiSSF46689. SSF46689. 1 hit.
PROSITEiPS00027. HOMEOBOX_1. 1 hit.
PS50071. HOMEOBOX_2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
  2. "Cloning and expression analysis of human HOXD1; a maternally-derived homeobox transcription factor abundant in unfertilized human oocytes."
    Adjaye J.
    Submitted (MAR-2000) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [MRNA].
    Tissue: Oocyte.
  3. "Complete sequencing and characterization of 21,243 full-length human cDNAs."
    Ota T., Suzuki Y., Nishikawa T., Otsuki T., Sugiyama T., Irie R., Wakamatsu A., Hayashi K., Sato H., Nagai K., Kimura K., Makita H., Sekine M., Obayashi M., Nishi T., Shibahara T., Tanaka T., Ishii S.
    , Yamamoto J., Saito K., Kawai Y., Isono Y., Nakamura Y., Nagahari K., Murakami K., Yasuda T., Iwayanagi T., Wagatsuma M., Shiratori A., Sudo H., Hosoiri T., Kaku Y., Kodaira H., Kondo H., Sugawara M., Takahashi M., Kanda K., Yokoi T., Furuya T., Kikkawa E., Omura Y., Abe K., Kamihara K., Katsuta N., Sato K., Tanikawa M., Yamazaki M., Ninomiya K., Ishibashi T., Yamashita H., Murakawa K., Fujimori K., Tanai H., Kimata M., Watanabe M., Hiraoka S., Chiba Y., Ishida S., Ono Y., Takiguchi S., Watanabe S., Yosida M., Hotuta T., Kusano J., Kanehori K., Takahashi-Fujii A., Hara H., Tanase T.-O., Nomura Y., Togiya S., Komai F., Hara R., Takeuchi K., Arita M., Imose N., Musashino K., Yuuki H., Oshima A., Sasaki N., Aotsuka S., Yoshikawa Y., Matsunawa H., Ichihara T., Shiohata N., Sano S., Moriya S., Momiyama H., Satoh N., Takami S., Terashima Y., Suzuki O., Nakagawa S., Senoh A., Mizoguchi H., Goto Y., Shimizu F., Wakebe H., Hishigaki H., Watanabe T., Sugiyama A., Takemoto M., Kawakami B., Yamazaki M., Watanabe K., Kumagai A., Itakura S., Fukuzumi Y., Fujimori Y., Komiyama M., Tashiro H., Tanigami A., Fujiwara T., Ono T., Yamada K., Fujii Y., Ozaki K., Hirao M., Ohmori Y., Kawabata A., Hikiji T., Kobatake N., Inagaki H., Ikema Y., Okamoto S., Okitani R., Kawakami T., Noguchi S., Itoh T., Shigeta K., Senba T., Matsumura K., Nakajima Y., Mizuno T., Morinaga M., Sasaki M., Togashi T., Oyama M., Hata H., Watanabe M., Komatsu T., Mizushima-Sugano J., Satoh T., Shirai Y., Takahashi Y., Nakagawa K., Okumura K., Nagase T., Nomura N., Kikuchi H., Masuho Y., Yamashita R., Nakai K., Yada T., Nakamura Y., Ohara O., Isogai T., Sugano S.
    Nat. Genet. 36:40-45(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Tissue: Caudate nucleus.
  4. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Entry informationi

Entry nameiHXD1_HUMAN
AccessioniPrimary (citable) accession number: Q9GZZ0
Secondary accession number(s): B2RAB4
Entry historyi
Integrated into UniProtKB/Swiss-Prot: September 26, 2001
Last sequence update: March 1, 2001
Last modified: April 29, 2015
This is version 115 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Vertebrate homeotic Hox proteins
    Nomenclature of vertebrate homeotic Hox proteins and list of entries
  2. Human chromosome 2
    Human chromosome 2: entries, gene names and cross-references to MIM
  3. Human entries with polymorphisms or disease mutations
    List of human entries with polymorphisms or disease mutations
  4. Human polymorphisms and disease mutations
    Index of human polymorphisms and disease mutations
  5. MIM cross-references
    Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot
  6. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.