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Reviewed, UniProtKB/Swiss-Prot Q9GZR1 (SENP6_HUMAN)

Last modified June 16, 2009. Version 78. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (6) | Third-party data | Customize display text xml rdf/xml gff fasta
Names and origin · Protein attributes · General annotation (Comments) · Ontologies · Alternative products · Sequence annotation (Features) · Sequences · References · Cross-references · Entry information · Relevant documents

Names and origin

Protein namesRecommended name:
    Sentrin-specific protease 6
    EC=3.4.22.-
Alternative name(s):
    Sentrin/SUMO-specific protease SENP6
    SUMO-1-specific protease 1
Gene names
Name: SENP6
Synonyms: KIAA0797, SSP1, SUSP1
ORF Names: FKSG6
OrganismHomo sapiens (Human)
Taxonomic identifier9606 [NCBI]
Taxonomic lineageEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo

Protein attributes

Sequence length1112 AA.
Sequence statusComplete.
Sequence processingThe displayed sequence is not processed.
Protein existenceEvidence at protein level.

General annotation (Comments)

Function

Protease that deconjugates SUMO1, SUMO2 and SUMO3 from targeted proteins. Does not seem to be involved in the processing of full-length SUMO proteins to their mature forms. Deconjugates SUMO1 from RXRA, leading to transcriptional activation. May act preferentially on substrates containing 3 or more SUMO2 or SUMO3 moieties. Ref.12 Ref.13

Subunit structure

Interacts with RXRA. Ref.12

Subcellular location

Nucleus. Ref.12 Ref.13

Tissue specificity

Highly expressed in reproductive organs, such as testis, ovary and prostate.

Sequence similarities

Belongs to the peptidase C48 family.

Sequence caution

The sequence CAH72480.1 differs from that shown. Reason: Erroneous gene model prediction.

The sequence CAH72481.1 differs from that shown. Reason: Erroneous gene model prediction.

The sequence CAH74168.1 differs from that shown. Reason: Erroneous gene model prediction.

The sequence CAH74170.1 differs from that shown. Reason: Erroneous gene model prediction.

The sequence CAI19523.1 differs from that shown. Reason: Erroneous gene model prediction.

The sequence CAI23575.1 differs from that shown. Reason: Erroneous gene model prediction.

The sequence CAI23576.1 differs from that shown. Reason: Erroneous gene model prediction.

Ontologies

Keywords
   Biological processUbl conjugation pathway
   Cellular componentNucleus
   Coding sequence diversityAlternative splicing
Polymorphism
   Molecular functionHydrolase
Protease
Thiol protease
   PTMPhosphoprotein
Gene Ontology (GO)
   Biological processmodification-dependent protein catabolic process

Inferred from electronic annotation. Source: UniProtKB-KW

   Cellular componentnucleus

Inferred from electronic annotation. Source: UniProtKB-SubCell

   Molecular functioncysteine-type peptidase activity

Inferred from electronic annotation. Source: UniProtKB-KW

Complete GO annotation...

Alternative products

This entry describes 2 isoforms produced by alternative splicing. [Align] [Select]
Isoform 1 (identifier: Q9GZR1-1)

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.
Isoform 2 (identifier: Q9GZR1-2)

The sequence of this isoform differs from the canonical sequence as follows:
     153-159: Missing.
Note: No experimental confirmation available.

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 11121112Sentrin-specific protease 6
PRO_0000101725

Regions

Region666 – 1112447Protease

Sites

Active site7651 By similarity
Active site9171 By similarity
Active site10301 By similarity

Amino acid modifications

Modified residue61Phosphoserine By similarity
Modified residue91Phosphoserine By similarity
Modified residue3351Phosphoserine Ref.11 Ref.14
Modified residue3361Phosphoserine Ref.11 Ref.14
Modified residue3501Phosphoserine Ref.14
Modified residue3521Phosphoserine Ref.14
Modified residue3611Phosphoserine Ref.14
Modified residue9191Phosphoserine Ref.10

Natural variations

Alternative sequence153 – 1597Missing in isoform 2.
VSP_005274
Natural variant1211T → M: dbSNP rs17414086. Ref.2 Ref.4
VAR_029653
Natural variant6371E → K: dbSNP rs1061347.
VAR_029654
Natural variant7171R → P: dbSNP rs12195603.
VAR_029655
Natural variant8201A → V: dbSNP rs34045941.
VAR_051545
Natural variant11061Y → C: dbSNP rs9250. Ref.2 Ref.4
VAR_016096

Experimental info

Mutagenesis10301C → S: Abolishes enzymatic activity. Ref.12
Sequence conflict2931D → V in BAC04794. Ref.9
Sequence conflict10431E → Q in AAG29831. Ref.1
Sequence conflict10431E → Q in AAG30253. Ref.3

Sequences

Sequence LengthMass (Da)Tools
Isoform 1 [UniParc].

Last modified December 12, 2006. Version 2.
Checksum: A7B07C75C39EE786

FASTA1,112126,146
        10         20         30         40         50         60 
MAAGKSGGSA GEITFLEALA RSESKRDGGF KNNWSFDHEE ESEGDTDKDG TNLLSVDEDE 

        70         80         90        100        110        120 
DSETSKGKKL NRRSEIVANS SGEFILKTYV RRNKSESFKT LKGNPIGLNM LSNNKKLSEN 

       130        140        150        160        170        180 
TQNTSLCSGT VVHGRRFHHA HAQIPVVKTA AQSSLDRKER KEYPPHVQKV EINPVRLSRL 

       190        200        210        220        230        240 
QGVERIMKKT EESESQVEPE IKRKVQQKRH CSTYQPTPPL SPASKKCLTH LEDLQRNCRQ 

       250        260        270        280        290        300 
AITLNESTGP LLRTSIHQNS GGQKSQNTGL TTKKFYGNNV EKVPIDIIVN CDDSKHTYLQ 

       310        320        330        340        350        360 
TNGKVILPGA KIPKITNLKE RKTSLSDLND PIILSSDDDD DNDRTNRRES ISPQPADSAC 

       370        380        390        400        410        420 
SSPAPSTGKV EAALNENTCR AERELRSIPE DSELNTVTLP RKARMKDQFG NSIINTPLKR 

       430        440        450        460        470        480 
RKVFSQEPPD ALALSCQSSF DSVILNCRSI RVGTLFRLLI EPVIFCLDFI KIQLDEPDHD 

       490        500        510        520        530        540 
PVEIILNTSD LTKCEWCNVR KLPVVFLQAI PAVYQKLSIQ LQMNKEDKVW NDCKGVNKLT 

       550        560        570        580        590        600 
NLEEQYIILI FQNGLDPPAN MVFESIINEI GIKNNISNFF AKIPFEEANG RLVACTRTYE 

       610        620        630        640        650        660 
ESIKGSCGQK ENKIKTVSFE SKIQLRSKQE FQFFDEEEET GENHTIFIGP VEKLIVYPPP 

       670        680        690        700        710        720 
PAKGGISVTN EDLHCLNEGE FLNDVIIDFY LKYLVLEKLK KEDADRIHIF SSFFYKRLNQ 

       730        740        750        760        770        780 
RERRNHETTN LSIQQKRHGR VKTWTRHVDI FEKDFIFVPL NEAAHWFLAV VCFPGLEKPK 

       790        800        810        820        830        840 
YEPNPHYHEN AVIQKCSTVE DSCISSSASE MESCSQNSSA KPVIKKMLNK KHCIAVIDSN 

       850        860        870        880        890        900 
PGQEESDPRY KRNICSVKYS VKKINHTASE NEEFNKGEST SQKVADRTKS ENGLQNESLS 

       910        920        930        940        950        960 
STHHTDGLSK IRLNYSDESP EAGKMLEDEL VDFSEDQDNQ DDSSDDGFLA DDNCSSEIGQ 

       970        980        990       1000       1010       1020 
WHLKPTICKQ PCILLMDSLR GPSRSNVVKI LREYLEVEWE VKKGSKRSFS KDVMKGSNPK 

      1030       1040       1050       1060       1070       1080 
VPQQNNFSDC GVYVLQYVES FFENPILSFE LPMNLANWFP PPRMRTKREE IRNIILKLQE 

      1090       1100       1110 
DQSKEKRKHK DTYSTEAPLG EGTEQYVNSI SD 

« Hide

Isoform 2.

Checksum: 7C0F2FF3E8BE3D46
Show »

FASTA1,105125,330

References

« Hide 'large scale' references
[1]"Ubiquitin-like proteins: new wines in new bottles."
Yeh E.T.H., Gong L., Kamitani T.
Gene 248:1-14(2000) [PubMed: 10806345] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1).
Tissue: Brain.
[2]"A new SUMO-1-specific protease, SUSP1, that is highly expressed in reproductive organs."
Kim K.I., Baek S.H., Jeon Y.-J., Nishimori S., Suzuki T., Uchida S., Shimbara N., Saitoh H., Tanaka K., Chung C.H.
J. Biol. Chem. 275:14102-14106(2000) [PubMed: 10799485] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1), VARIANTS MET-121 AND CYS-1106, CHARACTERIZATION.
Tissue: Brain.
[3]"Identification of FKSG6, a novel protein with protease activity."
Wang Y.-G.
Submitted (SEP-2000) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1).
[4]"Prediction of the coding sequences of unidentified human genes. XI. The complete sequences of 100 new cDNA clones from brain which code for large proteins in vitro."
Nagase T., Ishikawa K., Suyama M., Kikuno R., Miyajima N., Tanaka A., Kotani H., Nomura N., Ohara O.
DNA Res. 5:277-286(1998) [PubMed: 9872452] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1), VARIANTS MET-121 AND CYS-1106.
Tissue: Brain.
[5]Ohara O., Suyama M., Nagase T., Ishikawa K., Kikuno R.
Submitted (JAN-2003) to the EMBL/GenBank/DDBJ databases
Cited for: SEQUENCE REVISION.
[6]"The DNA sequence and analysis of human chromosome 6."
Mungall A.J., Palmer S.A., Sims S.K., Edwards C.A., Ashurst J.L., Wilming L., Jones M.C., Horton R., Hunt S.E., Scott C.E., Gilbert J.G.R., Clamp M.E., Bethel G., Milne S., Ainscough R., Almeida J.P., Ambrose K.D., Andrews T.D. expand/collapse author list , Ashwell R.I.S., Babbage A.K., Bagguley C.L., Bailey J., Banerjee R., Barker D.J., Barlow K.F., Bates K., Beare D.M., Beasley H., Beasley O., Bird C.P., Blakey S.E., Bray-Allen S., Brook J., Brown A.J., Brown J.Y., Burford D.C., Burrill W., Burton J., Carder C., Carter N.P., Chapman J.C., Clark S.Y., Clark G., Clee C.M., Clegg S., Cobley V., Collier R.E., Collins J.E., Colman L.K., Corby N.R., Coville G.J., Culley K.M., Dhami P., Davies J., Dunn M., Earthrowl M.E., Ellington A.E., Evans K.A., Faulkner L., Francis M.D., Frankish A., Frankland J., French L., Garner P., Garnett J., Ghori M.J., Gilby L.M., Gillson C.J., Glithero R.J., Grafham D.V., Grant M., Gribble S., Griffiths C., Griffiths M.N.D., Hall R., Halls K.S., Hammond S., Harley J.L., Hart E.A., Heath P.D., Heathcott R., Holmes S.J., Howden P.J., Howe K.L., Howell G.R., Huckle E., Humphray S.J., Humphries M.D., Hunt A.R., Johnson C.M., Joy A.A., Kay M., Keenan S.J., Kimberley A.M., King A., Laird G.K., Langford C., Lawlor S., Leongamornlert D.A., Leversha M., Lloyd C.R., Lloyd D.M., Loveland J.E., Lovell J., Martin S., Mashreghi-Mohammadi M., Maslen G.L., Matthews L., McCann O.T., McLaren S.J., McLay K., McMurray A., Moore M.J.F., Mullikin J.C., Niblett D., Nickerson T., Novik K.L., Oliver K., Overton-Larty E.K., Parker A., Patel R., Pearce A.V., Peck A.I., Phillimore B.J.C.T., Phillips S., Plumb R.W., Porter K.M., Ramsey Y., Ranby S.A., Rice C.M., Ross M.T., Searle S.M., Sehra H.K., Sheridan E., Skuce C.D., Smith S., Smith M., Spraggon L., Squares S.L., Steward C.A., Sycamore N., Tamlyn-Hall G., Tester J., Theaker A.J., Thomas D.W., Thorpe A., Tracey A., Tromans A., Tubby B., Wall M., Wallis J.M., West A.P., White S.S., Whitehead S.L., Whittaker H., Wild A., Willey D.J., Wilmer T.E., Wood J.M., Wray P.W., Wyatt J.C., Young L., Younger R.M., Bentley D.R., Coulson A., Durbin R.M., Hubbard T., Sulston J.E., Dunham I., Rogers J., Beck S.
Nature 425:805-811(2003) [PubMed: 14574404] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
[7]Mural R.J., Istrail S., Sutton G.G., Florea L., Halpern A.L., Mobarry C.M., Lippert R., Walenz B., Shatkay H., Dew I., Miller J.R., Flanigan M.J., Edwards N.J., Bolanos R., Fasulo D., Halldorsson B.V., Hannenhalli S., Turner R. expand/collapse author list , Yooseph S., Lu F., Nusskern D.R., Shue B.C., Zheng X.H., Zhong F., Delcher A.L., Huson D.H., Kravitz S.A., Mouchard L., Reinert K., Remington K.A., Clark A.G., Waterman M.S., Eichler E.E., Adams M.D., Hunkapiller M.W., Myers E.W., Venter J.C.
Submitted (SEP-2005) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
[8]"The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
The MGC Project Team
Genome Res. 14:2121-2127(2004) [PubMed: 15489334] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 2).
Tissue: Testis.
[9]"Complete sequencing and characterization of 21,243 full-length human cDNAs."
Ota T., Suzuki Y., Nishikawa T., Otsuki T., Sugiyama T., Irie R., Wakamatsu A., Hayashi K., Sato H., Nagai K., Kimura K., Makita H., Sekine M., Obayashi M., Nishi T., Shibahara T., Tanaka T., Ishii S. expand/collapse author list , Yamamoto J., Saito K., Kawai Y., Isono Y., Nakamura Y., Nagahari K., Murakami K., Yasuda T., Iwayanagi T., Wagatsuma M., Shiratori A., Sudo H., Hosoiri T., Kaku Y., Kodaira H., Kondo H., Sugawara M., Takahashi M., Kanda K., Yokoi T., Furuya T., Kikkawa E., Omura Y., Abe K., Kamihara K., Katsuta N., Sato K., Tanikawa M., Yamazaki M., Ninomiya K., Ishibashi T., Yamashita H., Murakawa K., Fujimori K., Tanai H., Kimata M., Watanabe M., Hiraoka S., Chiba Y., Ishida S., Ono Y., Takiguchi S., Watanabe S., Yosida M., Hotuta T., Kusano J., Kanehori K., Takahashi-Fujii A., Hara H., Tanase T.-O., Nomura Y., Togiya S., Komai F., Hara R., Takeuchi K., Arita M., Imose N., Musashino K., Yuuki H., Oshima A., Sasaki N., Aotsuka S., Yoshikawa Y., Matsunawa H., Ichihara T., Shiohata N., Sano S., Moriya S., Momiyama H., Satoh N., Takami S., Terashima Y., Suzuki O., Nakagawa S., Senoh A., Mizoguchi H., Goto Y., Shimizu F., Wakebe H., Hishigaki H., Watanabe T., Sugiyama A., Takemoto M., Kawakami B., Yamazaki M., Watanabe K., Kumagai A., Itakura S., Fukuzumi Y., Fujimori Y., Komiyama M., Tashiro H., Tanigami A., Fujiwara T., Ono T., Yamada K., Fujii Y., Ozaki K., Hirao M., Ohmori Y., Kawabata A., Hikiji T., Kobatake N., Inagaki H., Ikema Y., Okamoto S., Okitani R., Kawakami T., Noguchi S., Itoh T., Shigeta K., Senba T., Matsumura K., Nakajima Y., Mizuno T., Morinaga M., Sasaki M., Togashi T., Oyama M., Hata H., Watanabe M., Komatsu T., Mizushima-Sugano J., Satoh T., Shirai Y., Takahashi Y., Nakagawa K., Okumura K., Nagase T., Nomura N., Kikuchi H., Masuho Y., Yamashita R., Nakai K., Yada T., Nakamura Y., Ohara O., Isogai T., Sugano S.
Nat. Genet. 36:40-45(2004) [PubMed: 14702039] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 1-692 (ISOFORM 2).
Tissue: Tongue.
[10]"Large-scale characterization of HeLa cell nuclear phosphoproteins."
Beausoleil S.A., Jedrychowski M., Schwartz D., Elias J.E., Villen J., Li J., Cohn M.A., Cantley L.C., Gygi S.P.
Proc. Natl. Acad. Sci. U.S.A. 101:12130-12135(2004) [PubMed: 15302935] [Abstract]
Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-919, MASS SPECTROMETRY.
Tissue: Epithelium.
[11]"Global, in vivo, and site-specific phosphorylation dynamics in signaling networks."
Olsen J.V., Blagoev B., Gnad F., Macek B., Kumar C., Mortensen P., Mann M.
Cell 127:635-648(2006) [PubMed: 17081983] [Abstract]
Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-335 AND SER-336, MASS SPECTROMETRY.
Tissue: Epithelium.
[12]"Negative modulation of RXRalpha transcriptional activity by small ubiquitin-related modifier (SUMO) modification and its reversal by SUMO-specific protease SUSP1."
Choi S.J., Chung S.S., Rho E.J., Lee H.W., Lee M.H., Choi H.S., Seol J.H., Baek S.H., Bang O.S., Chung C.H.
J. Biol. Chem. 281:30669-30677(2006) [PubMed: 16912044] [Abstract]
Cited for: INTERACTION WITH RXRA, SUBCELLULAR LOCATION, FUNCTION, MUTAGENESIS OF CYS-1030.
[13]"SUSP1 antagonizes formation of highly SUMO2/3-conjugated species."
Mukhopadhyay D., Ayaydin F., Kolli N., Tan S.-H., Anan T., Kametaka A., Azuma Y., Wilkinson K.D., Dasso M.
J. Cell Biol. 174:939-949(2006) [PubMed: 17000875] [Abstract]
Cited for: SUBCELLULAR LOCATION, FUNCTION.
[14]"A quantitative atlas of mitotic phosphorylation."
Dephoure N., Zhou C., Villen J., Beausoleil S.A., Bakalarski C.E., Elledge S.J., Gygi S.P.
Proc. Natl. Acad. Sci. U.S.A. 105:10762-10767(2008) [PubMed: 18669648] [Abstract]
Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-335; SER-336; SER-350; SER-352 AND SER-361, MASS SPECTROMETRY.
[15]Colinge J., Superti-Furga G., Bennett K.L.
Submitted (OCT-2008) to UniProtKB
Cited for: IDENTIFICATION [LARGE SCALE ANALYSIS], MASS SPECTROMETRY.

Cross-references

Sequence databases

AF196304 mRNA. Translation: AAF04852.1.
AF307849 mRNA. Translation: AAG29831.1.
AF306508 mRNA. Translation: AAG30253.1.
AB018340 mRNA. Translation: BAA34517.2. Different initiation.
AL589656 expand/collapse EMBL AC list , AL109897, AL355797, AL356057 Genomic DNA. Translation: CAH72480.1. Sequence problems.
AL589656, AL355797, AL356057 Genomic DNA. Translation: CAH72481.1. Sequence problems.
AL356057 expand/collapse EMBL AC list , AL109897, AL355797, AL589656 Genomic DNA. Translation: CAH74168.1. Sequence problems.
AL356057, AL355797, AL589656 Genomic DNA. Translation: CAH74170.1. Sequence problems.
AL109897 expand/collapse EMBL AC list , AL355797, AL356057, AL589656 Genomic DNA. Translation: CAI19523.1. Sequence problems.
AL355797 expand/collapse EMBL AC list , AL109897, AL356057, AL589656 Genomic DNA. Translation: CAI23575.1. Sequence problems.
AL355797, AL356057, AL589656 Genomic DNA. Translation: CAI23576.1. Sequence problems.
CH471051 Genomic DNA. Translation: EAW48734.1.
BC028583 mRNA. Translation: AAH28583.1.
AK096455 mRNA. Translation: BAC04794.1.
IPIIPI00023586.
IPI00747900.
RefSeqNP_001093879.1.
NP_056386.2.
UniGeneHs.485784

3D structure databases

ModBaseSearch...

Protein family/group databases

MEROPSC48.004.

PTM databases

PhosphoSiteQ9GZR1.

Genome annotation databases

EnsemblENSG00000112701. Homo sapiens. [Contig view]
GeneID26054.
KEGGhsa:26054.

Organism-specific databases

GeneCardsGC06P076367.
H-InvDBHIX0006016.
HGNCHGNC:20944. SENP6.
MIM605003. gene.
PharmGKBPA134893291.
HUGESearch...
GenAtlasSearch...

Phylogenomic databases

HOGENOMQ9GZR1.
HOVERGENQ9GZR1.

Gene expression databases

ArrayExpressQ9GZR1.
BgeeQ9GZR1.
CleanExHS_SENP6.
GermOnlineENSG00000112701. Homo sapiens.

Family and domain databases

InterProIPR003653. Peptidase_C48.
[Graphical view]
PfamPF02902. Peptidase_C48. 1 hit.
[Graphical view]
PROSITEPS50600. ULP_PROTEASE. 1 hit.
[Graphical view]
ProtoNetSearch...

Other Resources

NextBio47924.
SOURCESearch...

Entry information

Entry nameSENP6_HUMAN
AccessionPrimary (citable) accession number: Q9GZR1
Secondary accession number(s): A6NNY9 expand/collapse secondary AC list , O94891, Q5VUL3, Q5VUL4, Q8TBY4, Q9UJV5
Entry history
Integrated into UniProtKB/Swiss-Prot: October 18, 2001
Last sequence update: December 12, 2006
Last modified: June 16, 2009
This is version 78 of the entry and version 2 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation projectHPI (Human Proteome Initiative)

Relevant documents

Human chromosome 6

Human chromosome 6: entries, gene names and cross-references to MIM

Human entries with polymorphisms or disease mutations

List of human entries with polymorphisms or disease mutations

Human polymorphisms and disease mutations

Index of human polymorphisms and disease mutations

MIM cross-references

Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot

Peptidase families

Classification of peptidase families and list of entries

SIMILARITY comments

Index of protein domains and families

Names and origin · Protein attributes · General annotation (Comments) · Ontologies · Alternative products · Sequence annotation (Features) · Sequences · References · Cross-references · Entry information · Relevant documents