Reviewed,
UniProtKB/Swiss-Prot Q9GZR1 (SENP6_HUMAN)
Last modified
June 16, 2009.
Version 78.
History...
Clusters with 100%,
90%,
50% identity |
Documents (6) |
Third-party data |
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Names and origin
| Protein names | Recommended name: Sentrin-specific protease 6 EC=3.4.22.- Alternative name(s): Sentrin/SUMO-specific protease SENP6 SUMO-1-specific protease 1 | ||||||
| Gene names |
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| Organism | Homo sapiens (Human) | ||||||
| Taxonomic identifier | 9606 [NCBI] | ||||||
| Taxonomic lineage | Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Primates › Haplorrhini › Catarrhini › Hominidae › Homo |
Protein attributes
| Sequence length | 1112 AA. |
| Sequence status | Complete. |
| Sequence processing | The displayed sequence is not processed. |
| Protein existence | Evidence at protein level. |
General annotation (Comments)
| Function | Protease that deconjugates SUMO1, SUMO2 and SUMO3 from targeted proteins. Does not seem to be involved in the processing of full-length SUMO proteins to their mature forms. Deconjugates SUMO1 from RXRA, leading to transcriptional activation. May act preferentially on substrates containing 3 or more SUMO2 or SUMO3 moieties. Ref.12 Ref.13 |
| Subunit structure | Interacts with RXRA. Ref.12 |
| Subcellular location | |
| Tissue specificity | Highly expressed in reproductive organs, such as testis, ovary and prostate. |
| Sequence similarities | Belongs to the peptidase C48 family. |
| Sequence caution | The sequence CAH72480.1 differs from that shown. Reason: Erroneous gene model prediction. The sequence CAH72481.1 differs from that shown. Reason: Erroneous gene model prediction. The sequence CAH74168.1 differs from that shown. Reason: Erroneous gene model prediction. The sequence CAH74170.1 differs from that shown. Reason: Erroneous gene model prediction. The sequence CAI19523.1 differs from that shown. Reason: Erroneous gene model prediction. The sequence CAI23575.1 differs from that shown. Reason: Erroneous gene model prediction. The sequence CAI23576.1 differs from that shown. Reason: Erroneous gene model prediction. |
Ontologies
| Keywords | |
|---|---|
| Biological process | Ubl conjugation pathway |
| Cellular component | Nucleus |
| Coding sequence diversity | Alternative splicing Polymorphism |
| Molecular function | Hydrolase Protease Thiol protease |
| PTM | Phosphoprotein |
| Gene Ontology (GO) | |
| Biological process | modification-dependent protein catabolic process Inferred from electronic annotation. Source: UniProtKB-KW |
| Cellular component | nucleus Inferred from electronic annotation. Source: UniProtKB-SubCell |
| Molecular function | cysteine-type peptidase activity Inferred from electronic annotation. Source: UniProtKB-KW |
| Complete GO annotation... | |
Alternative products
| This entry describes 2 isoforms produced by alternative splicing. [Align] [Select] | ||||||
| Isoform 1 (identifier: Q9GZR1-1) This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry. | ||||||
| Isoform 2 (identifier: Q9GZR1-2) The sequence of this isoform differs from the canonical sequence as follows: 153-159: Missing. | ||||||
| Note: No experimental confirmation available. |
Sequence annotation (Features)
| Feature key | Position(s) | Length | Description | Graphical view | Feature identifier | ||||
Molecule processing | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| Chain | 1 – 1112 | 1112 | Sentrin-specific protease 6 | PRO_0000101725 | |||||
Regions | |||||||||
| Region | 666 – 1112 | 447 | Protease | ||||||
Sites | |||||||||
| Active site | 765 | 1 | By similarity | ||||||
| Active site | 917 | 1 | By similarity | ||||||
| Active site | 1030 | 1 | By similarity | ||||||
Amino acid modifications | |||||||||
| Modified residue | 6 | 1 | Phosphoserine By similarity | ||||||
| Modified residue | 9 | 1 | Phosphoserine By similarity | ||||||
| Modified residue | 335 | 1 | Phosphoserine Ref.11 Ref.14 | ||||||
| Modified residue | 336 | 1 | Phosphoserine Ref.11 Ref.14 | ||||||
| Modified residue | 350 | 1 | Phosphoserine Ref.14 | ||||||
| Modified residue | 352 | 1 | Phosphoserine Ref.14 | ||||||
| Modified residue | 361 | 1 | Phosphoserine Ref.14 | ||||||
| Modified residue | 919 | 1 | Phosphoserine Ref.10 | ||||||
Natural variations | |||||||||
| Alternative sequence | 153 – 159 | 7 | Missing in isoform 2. | VSP_005274 | |||||
| Natural variant | 121 | 1 | T → M: dbSNP rs17414086. Ref.2 Ref.4 | VAR_029653 | |||||
| Natural variant | 637 | 1 | E → K: dbSNP rs1061347. | VAR_029654 | |||||
| Natural variant | 717 | 1 | R → P: dbSNP rs12195603. | VAR_029655 | |||||
| Natural variant | 820 | 1 | A → V: dbSNP rs34045941. | VAR_051545 | |||||
| Natural variant | 1106 | 1 | Y → C: dbSNP rs9250. Ref.2 Ref.4 | VAR_016096 | |||||
Experimental info | |||||||||
| Mutagenesis | 1030 | 1 | C → S: Abolishes enzymatic activity. Ref.12 | ||||||
| Sequence conflict | 293 | 1 | D → V in BAC04794. Ref.9 | ||||||
| Sequence conflict | 1043 | 1 | E → Q in AAG29831. Ref.1 | ||||||
| Sequence conflict | 1043 | 1 | E → Q in AAG30253. Ref.3 | ||||||
Sequences
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References
| « Hide 'large scale' references | |
| [1] | "Ubiquitin-like proteins: new wines in new bottles." Yeh E.T.H., Gong L., Kamitani T. Gene 248:1-14(2000) [PubMed: 10806345] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1). Tissue: Brain. |
| [2] | "A new SUMO-1-specific protease, SUSP1, that is highly expressed in reproductive organs." Kim K.I., Baek S.H., Jeon Y.-J., Nishimori S., Suzuki T., Uchida S., Shimbara N., Saitoh H., Tanaka K., Chung C.H. J. Biol. Chem. 275:14102-14106(2000) [PubMed: 10799485] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1), VARIANTS MET-121 AND CYS-1106, CHARACTERIZATION. Tissue: Brain. |
| [3] | "Identification of FKSG6, a novel protein with protease activity." Wang Y.-G. Submitted (SEP-2000) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1). |
| [4] | "Prediction of the coding sequences of unidentified human genes. XI. The complete sequences of 100 new cDNA clones from brain which code for large proteins in vitro." Nagase T., Ishikawa K., Suyama M., Kikuno R., Miyajima N., Tanaka A., Kotani H., Nomura N., Ohara O. DNA Res. 5:277-286(1998) [PubMed: 9872452] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1), VARIANTS MET-121 AND CYS-1106. Tissue: Brain. |
| [5] | Ohara O., Suyama M., Nagase T., Ishikawa K., Kikuno R. Submitted (JAN-2003) to the EMBL/GenBank/DDBJ databases Cited for: SEQUENCE REVISION. |
| [6] | "The DNA sequence and analysis of human chromosome 6." Mungall A.J., Palmer S.A., Sims S.K., Edwards C.A., Ashurst J.L., Wilming L., Jones M.C., Horton R., Hunt S.E., Scott C.E., Gilbert J.G.R., Clamp M.E., Bethel G., Milne S., Ainscough R., Almeida J.P., Ambrose K.D., Andrews T.D. Beck S.Nature 425:805-811(2003) [PubMed: 14574404] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. |
| [7] | Mural R.J., Istrail S., Sutton G.G., Florea L., Halpern A.L., Mobarry C.M., Lippert R., Walenz B., Shatkay H., Dew I., Miller J.R., Flanigan M.J., Edwards N.J., Bolanos R., Fasulo D., Halldorsson B.V., Hannenhalli S., Turner R. Venter J.C.Submitted (SEP-2005) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. |
| [8] | "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)." The MGC Project Team Genome Res. 14:2121-2127(2004) [PubMed: 15489334] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 2). Tissue: Testis. |
| [9] | "Complete sequencing and characterization of 21,243 full-length human cDNAs." Ota T., Suzuki Y., Nishikawa T., Otsuki T., Sugiyama T., Irie R., Wakamatsu A., Hayashi K., Sato H., Nagai K., Kimura K., Makita H., Sekine M., Obayashi M., Nishi T., Shibahara T., Tanaka T., Ishii S. Sugano S.Nat. Genet. 36:40-45(2004) [PubMed: 14702039] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 1-692 (ISOFORM 2). Tissue: Tongue. |
| [10] | "Large-scale characterization of HeLa cell nuclear phosphoproteins." Beausoleil S.A., Jedrychowski M., Schwartz D., Elias J.E., Villen J., Li J., Cohn M.A., Cantley L.C., Gygi S.P. Proc. Natl. Acad. Sci. U.S.A. 101:12130-12135(2004) [PubMed: 15302935] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-919, MASS SPECTROMETRY. Tissue: Epithelium. |
| [11] | "Global, in vivo, and site-specific phosphorylation dynamics in signaling networks." Olsen J.V., Blagoev B., Gnad F., Macek B., Kumar C., Mortensen P., Mann M. Cell 127:635-648(2006) [PubMed: 17081983] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-335 AND SER-336, MASS SPECTROMETRY. Tissue: Epithelium. |
| [12] | "Negative modulation of RXRalpha transcriptional activity by small ubiquitin-related modifier (SUMO) modification and its reversal by SUMO-specific protease SUSP1." Choi S.J., Chung S.S., Rho E.J., Lee H.W., Lee M.H., Choi H.S., Seol J.H., Baek S.H., Bang O.S., Chung C.H. J. Biol. Chem. 281:30669-30677(2006) [PubMed: 16912044] [Abstract] Cited for: INTERACTION WITH RXRA, SUBCELLULAR LOCATION, FUNCTION, MUTAGENESIS OF CYS-1030. |
| [13] | "SUSP1 antagonizes formation of highly SUMO2/3-conjugated species." Mukhopadhyay D., Ayaydin F., Kolli N., Tan S.-H., Anan T., Kametaka A., Azuma Y., Wilkinson K.D., Dasso M. J. Cell Biol. 174:939-949(2006) [PubMed: 17000875] [Abstract] Cited for: SUBCELLULAR LOCATION, FUNCTION. |
| [14] | "A quantitative atlas of mitotic phosphorylation." Dephoure N., Zhou C., Villen J., Beausoleil S.A., Bakalarski C.E., Elledge S.J., Gygi S.P. Proc. Natl. Acad. Sci. U.S.A. 105:10762-10767(2008) [PubMed: 18669648] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-335; SER-336; SER-350; SER-352 AND SER-361, MASS SPECTROMETRY. |
| [15] | Colinge J., Superti-Furga G., Bennett K.L. Submitted (OCT-2008) to UniProtKB Cited for: IDENTIFICATION [LARGE SCALE ANALYSIS], MASS SPECTROMETRY. |
Cross-references
Sequence databases | |
|---|---|
| AF196304 mRNA. Translation: AAF04852.1. AF307849 mRNA. Translation: AAG29831.1. AF306508 mRNA. Translation: AAG30253.1. AB018340 mRNA. Translation: BAA34517.2. Different initiation. AL589656 AL356057 Genomic DNA. Translation: CAH72480.1. Sequence problems.AL589656, AL355797, AL356057 Genomic DNA. Translation: CAH72481.1. Sequence problems. AL356057 AL589656 Genomic DNA. Translation: CAH74168.1. Sequence problems.AL356057, AL355797, AL589656 Genomic DNA. Translation: CAH74170.1. Sequence problems. AL109897 AL589656 Genomic DNA. Translation: CAI19523.1. Sequence problems.AL355797 AL589656 Genomic DNA. Translation: CAI23575.1. Sequence problems.AL355797, AL356057, AL589656 Genomic DNA. Translation: CAI23576.1. Sequence problems. CH471051 Genomic DNA. Translation: EAW48734.1. BC028583 mRNA. Translation: AAH28583.1. AK096455 mRNA. Translation: BAC04794.1. | |
| IPI | IPI00023586. IPI00747900. |
| RefSeq | NP_001093879.1. NP_056386.2. |
| UniGene | Hs.485784 |
3D structure databases | |
| ModBase | Search... |
Protein family/group databases | |
| MEROPS | C48.004. |
PTM databases | |
| PhosphoSite | Q9GZR1. |
Genome annotation databases | |
| Ensembl | ENSG00000112701. Homo sapiens. [Contig view] |
| GeneID | 26054. |
| KEGG | hsa:26054. |
Organism-specific databases | |
| GeneCards | GC06P076367. |
| H-InvDB | HIX0006016. |
| HGNC | HGNC:20944. SENP6. |
| MIM | 605003. gene. |
| PharmGKB | PA134893291. |
| HUGE | Search... |
| GenAtlas | Search... |
Phylogenomic databases | |
| HOGENOM | Q9GZR1. |
| HOVERGEN | Q9GZR1. |
Gene expression databases | |
| ArrayExpress | Q9GZR1. |
| Bgee | Q9GZR1. |
| CleanEx | HS_SENP6. |
| GermOnline | ENSG00000112701. Homo sapiens. |
Family and domain databases | |
| InterPro | IPR003653. Peptidase_C48. [Graphical view] |
| Pfam | PF02902. Peptidase_C48. 1 hit. [Graphical view] |
| PROSITE | PS50600. ULP_PROTEASE. 1 hit. [Graphical view] |
| ProtoNet | Search... |
Other Resources | |
| NextBio | 47924. |
| SOURCE | Search... |
Entry information
| Entry name | SENP6_HUMAN | ||||||||
| Accession | Primary (citable) accession number: Q9GZR1 Secondary accession number(s): A6NNY9 Q9UJV5 | ||||||||
| Entry history |
| ||||||||
| Entry status | Reviewed (UniProtKB/Swiss-Prot) | ||||||||
| Annotation project | HPI (Human Proteome Initiative) | ||||||||
Relevant documents
| Human chromosome 6 Human chromosome 6: entries, gene names and cross-references to MIM |
| Human entries with polymorphisms or disease mutations List of human entries with polymorphisms or disease mutations |
| Human polymorphisms and disease mutations Index of human polymorphisms and disease mutations |
| MIM cross-references Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot |
| Peptidase families Classification of peptidase families and list of entries |
| SIMILARITY comments Index of protein domains and families |

Clusters with


