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Protein

Nuclear distribution protein nudE-like 1

Gene

NDEL1

Organism
Homo sapiens (Human)
Status
Reviewed-Annotation score: Annotation score: 5 out of 5-Experimental evidence at protein leveli

Functioni

Required for organization of the cellular microtubule array and microtubule anchoring at the centrosome. May regulate microtubule organization at least in part by targeting the microtubule severing protein KATNA1 to the centrosome. Also positively regulates the activity of the minus-end directed microtubule motor protein dynein. May enhance dynein-mediated microtubule sliding by targeting dynein to the microtubule plus ends. Required for several dynein- and microtubule-dependent processes such as the maintenance of Golgi integrity, the centripetal motion of secretory vesicles and the coupling of the nucleus and centrosome. Also required during brain development for the migration of newly formed neurons from the ventricular/subventricular zone toward the cortical plate. Plays a role, together with DISC1, in the regulation of neurite outgrowth. Required for mitosis in some cell types but appears to be dispensible for mitosis in cortical neuronal progenitors, which instead requires NDE1. Facilitates the polymerization of neurofilaments from the individual subunits NEFH and NEFL.4 Publications

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Developmental protein

Keywords - Biological processi

Differentiation, Neurogenesis, Transport

Enzyme and pathway databases

ReactomeiR-HSA-2467813. Separation of Sister Chromatids.
R-HSA-2500257. Resolution of Sister Chromatid Cohesion.
R-HSA-5663220. RHO GTPases Activate Formins.
R-HSA-68877. Mitotic Prometaphase.
SIGNORiQ9GZM8.

Names & Taxonomyi

Protein namesi
Recommended name:
Nuclear distribution protein nudE-like 1
Short name:
Protein Nudel
Alternative name(s):
Mitosin-associated protein 1
Gene namesi
Name:NDEL1
Synonyms:EOPA, MITAP1, NUDEL
OrganismiHomo sapiens (Human)
Taxonomic identifieri9606 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo
Proteomesi
  • UP000005640 Componenti: Chromosome 17

Organism-specific databases

HGNCiHGNC:17620. NDEL1.

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Centromere, Chromosome, Cytoplasm, Cytoskeleton, Kinetochore, Microtubule

Pathology & Biotechi

Mutagenesis

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Mutagenesisi198S → A: Abrogates mitotic phosphorylation; when associated with V-219; A-231; A-242 and V-245. Abrogates phosphorylation by CDK5; when associated with A-219 and A-231. 2 Publications1
Mutagenesisi198S → E: Enhances interaction with PAFAH1B1 and impairs centrosomal localization; when associated with E-219; E-231; E-242 and E-245. 2 Publications1
Mutagenesisi219T → A: Abrogates phosphorylation by CDK5; when associated with A-198 and A-231. 2 Publications1
Mutagenesisi219T → E: Enhances interaction with PAFAH1B1 and impairs centrosomal localization; when associated with E-198; E-231; E-242 and E-245. 2 Publications1
Mutagenesisi219T → V: Abrogates mitotic phosphorylation; when associated with A-198; A-231; A-242 and V-245. 2 Publications1
Mutagenesisi231S → A: Abrogates mitotic phosphorylation; when associated with A-198; V-219; A-242 and V-245. Abrogates phosphorylation by CDK5; when associated with A-198 and A-219. 2 Publications1
Mutagenesisi231S → E: Enhances interaction with PAFAH1B1 and impairs centrosomal localization; when associated with E-198; E-219; E-242 and E-245. 2 Publications1
Mutagenesisi242S → A: Abrogates mitotic phosphorylation; when associated with A-198; V-219; A-231 and V-245. 1 Publication1
Mutagenesisi242S → E: Enhances interaction with PAFAH1B1 and impairs centrosomal localization; when associated with E-198; E-219; E-231 and E-245. 1 Publication1
Mutagenesisi245T → E: Enhances interaction with PAFAH1B1 and impairs centrosomal localization; when associated with E-198; E-219; E-231 and E-242. 1 Publication1
Mutagenesisi245T → V: Abrogates mitotic phosphorylation; when associated with A-198; V-219; A-231 and A-242. 1 Publication1
Mutagenesisi266L → A: Abolishes interaction with DISC1; when associated with A-267. 1 Publication1
Mutagenesisi267E → A: Abolishes interaction with DISC1; when associated with A-266. 1 Publication1
Mutagenesisi273C → A: Abolishes oligopeptidase activity. 1 Publication1

Organism-specific databases

DisGeNETi81565.
OpenTargetsiENSG00000166579.
PharmGKBiPA134887314.

Polymorphism and mutation databases

BioMutaiNDEL1.
DMDMi74725006.

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00002402101 – 345Nuclear distribution protein nudE-like 1Add BLAST345

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Modified residuei215PhosphoserineCombined sources1
Modified residuei219Phosphothreonine; by CDK1 and MAPK1Combined sources1
Modified residuei231PhosphoserineCombined sources1
Modified residuei242Phosphoserine; by CDK1Combined sources1
Modified residuei245Phosphothreonine; by CDK1 and MAPK1Combined sources1
Lipidationi273S-palmitoyl cysteine; by ZDHHC2, ZDHHC3 and ZDHHC71 Publication1
Modified residuei344PhosphoserineBy similarity1

Post-translational modificationi

Phosphorylated in mitosis. Can be phosphorylated by CDK1, CDK5 and MAPK1. Phosphorylation by CDK5 promotes interaction with KATNA1 and YWHAE.3 Publications
Palmitoylation at Cys-273 reduces affinity for dynein.1 Publication

Keywords - PTMi

Lipoprotein, Palmitate, Phosphoprotein

Proteomic databases

EPDiQ9GZM8.
MaxQBiQ9GZM8.
PaxDbiQ9GZM8.
PeptideAtlasiQ9GZM8.
PRIDEiQ9GZM8.

PTM databases

iPTMnetiQ9GZM8.
PhosphoSitePlusiQ9GZM8.
SwissPalmiQ9GZM8.

Expressioni

Tissue specificityi

Expressed in brain, heart, kidney, liver, lung, pancreas, placenta and skeletal muscle.1 Publication

Developmental stagei

Expression peaks in mitosis.1 Publication

Gene expression databases

BgeeiENSG00000166579.
CleanExiHS_NDEL1.
ExpressionAtlasiQ9GZM8. baseline and differential.
GenevisibleiQ9GZM8. HS.

Organism-specific databases

HPAiHPA017916.

Interactioni

Subunit structurei

Interacts with YWHAE. Interacts directly with NEFL and indirectly with NEFH. Interacts with microtubules (By similarity). Self-associates. Interacts with DISC1, dynein, dynactin, tubulin gamma, KATNA1, KATNB1, PAFAH1B1, PCM1 and PCNT. Interacts (via C-terminus) with CENPF. Interacts with ZNF365.By similarity13 Publications

Binary interactionsi

WithEntry#Exp.IntActNotes
itself4EBI-928842,EBI-928842
A8KAD63EBI-928842,EBI-10174974
AIMP2Q131553EBI-928842,EBI-745226
BMI1P352263EBI-928842,EBI-2341576
CCHCR1Q8TD31-33EBI-928842,EBI-10175300
CENPFP494545EBI-928842,EBI-968343
DISC1Q9NRI513EBI-928842,EBI-529989
DTNBO609413EBI-928842,EBI-740402
GOLGA2Q083793EBI-928842,EBI-618309
KIFC3Q9BVG83EBI-928842,EBI-2125614
KRT40Q6A1623EBI-928842,EBI-10171697
MBIPQ9NS73-53EBI-928842,EBI-10182361
MTUS2Q5JR593EBI-928842,EBI-742948
NDC80O147773EBI-928842,EBI-715849
PAFAH1B1P430343EBI-928842,EBI-720620
PKP2Q999594EBI-928842,EBI-702235
SNAPC5O759713EBI-928842,EBI-749483
TRAF3IP3Q9Y2285EBI-928842,EBI-765817
TRIM27P143736EBI-928842,EBI-719493
USP2O756045EBI-928842,EBI-743272
XPAP230255EBI-928842,EBI-295222
ZNF180Q9UJW83EBI-928842,EBI-10322527
ZNF260Q3ZCT13EBI-928842,EBI-10241410
ZNF264Q14C613EBI-928842,EBI-2826570
ZNF417Q8TAU33EBI-928842,EBI-740727
ZNF490Q9ULM25EBI-928842,EBI-1105370
ZNF544Q6NX493EBI-928842,EBI-2841978
ZNF572Q7Z3I73EBI-928842,EBI-10257016
ZNF599Q96NL35EBI-928842,EBI-8653994
ZNF844Q08AG55EBI-928842,EBI-10225757

GO - Molecular functioni

Protein-protein interaction databases

BioGridi123527. 104 interactors.
DIPiDIP-29554N.
IntActiQ9GZM8. 74 interactors.
MINTiMINT-157818.
STRINGi9606.ENSP00000333982.

Structurei

Secondary structure

1345
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Helixi59 – 165Combined sources107

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
2V66X-ray2.10B/C/D/E58-168[»]
ProteinModelPortaliQ9GZM8.
SMRiQ9GZM8.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ9GZM8.

Family & Domainsi

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Regioni56 – 166Self-associationBy similarityAdd BLAST111
Regioni64 – 189Interaction with KATNB1By similarityAdd BLAST126
Regioni114 – 133Required for interaction with PAFAH1B1Add BLAST20
Regioni175 – 345Interaction with CENPF1 PublicationAdd BLAST171
Regioni189 – 256Interaction with YWHAEBy similarityAdd BLAST68
Regioni191 – 345Interaction with NEFLBy similarityAdd BLAST155
Regioni195 – 256Interaction with KATNA1By similarityAdd BLAST62
Regioni241 – 280Interaction with DISC1Add BLAST40
Regioni256 – 291Required for localization to the centrosome and interaction with dynein, dynactin, tubulin gamma, PCM1 and PCNT1 PublicationAdd BLAST36

Coiled coil

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Coiled coili28 – 190Sequence analysisAdd BLAST163

Sequence similaritiesi

Belongs to the nudE family.Curated

Keywords - Domaini

Coiled coil

Phylogenomic databases

eggNOGiKOG1853. Eukaryota.
ENOG410XPMP. LUCA.
GeneTreeiENSGT00390000000111.
HOGENOMiHOG000280681.
HOVERGENiHBG082010.
InParanoidiQ9GZM8.
KOiK16739.
OMAiQAFLIMD.
OrthoDBiEOG091G0GBV.
PhylomeDBiQ9GZM8.
TreeFamiTF325693.

Family and domain databases

InterProiIPR033493. NDEL1.
IPR033494. NUDE.
IPR006964. NUDE_dom.
[Graphical view]
PANTHERiPTHR10921. PTHR10921. 1 hit.
PTHR10921:SF0. PTHR10921:SF0. 1 hit.
PfamiPF04880. NUDE_C. 1 hit.
[Graphical view]

Sequences (3)i

Sequence statusi: Complete.

This entry describes 3 isoformsi produced by alternative splicing. AlignAdd to basket

Isoform 1 (identifier: Q9GZM8-1) [UniParc]FASTAAdd to basket

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide

        10         20         30         40         50
MDGEDIPDFS SLKEETAYWK ELSLKYKQSF QEARDELVEF QEGSRELEAE
60 70 80 90 100
LEAQLVQAEQ RNRDLQADNQ RLKYEVEALK EKLEHQYAQS YKQVSVLEDD
110 120 130 140 150
LSQTRAIKEQ LHKYVRELEQ ANDDLERAKR ATIVSLEDFE QRLNQAIERN
160 170 180 190 200
AFLESELDEK ESLLVSVQRL KDEARDLRQE LAVRERQQEV TRKSAPSSPT
210 220 230 240 250
LDCEKMDSAV QASLSLPATP VGKGTENTFP SPKAIPNGFG TSPLTPSARI
260 270 280 290 300
SALNIVGDLL RKVGALESKL AACRNFAKDQ ASRKSYISGN VNCGVLNGNG
310 320 330 340
TKFSRSGHTS FFDKGAVNGF DPAPPPPGLG SSRPSSAPGM LPLSV
Length:345
Mass (Da):38,375
Last modified:March 1, 2001 - v1
Checksum:iE91EA053FCA315D7
GO
Isoform 2 (identifier: Q9GZM8-2) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     316-345: AVNGFDPAPPPPGLGSSRPSSAPGMLPLSV → SSSSCAIRAS...APPPTLLLET

Note: No experimental confirmation available.
Show »
Length:367
Mass (Da):40,616
Checksum:iEC939E90FAB014BC
GO
Isoform 3 (identifier: Q9GZM8-3) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     316-345: AVNGFDPAPPPPGLGSSRPSSAPGMLPLSV → QEKVIFPTLFMGQ

Note: No experimental confirmation available.
Show »
Length:328
Mass (Da):37,039
Checksum:iD897B2D19656D061
GO

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Sequence conflicti322P → T in AAH26101 (PubMed:15489334).Curated1

Alternative sequence

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Alternative sequenceiVSP_019310316 – 345AVNGF…LPLSV → SSSSCAIRASRRRFSSSSAD LAGRGGGDGSIPAQHSTGAS GKAPPPTLLLET in isoform 2. 1 PublicationAdd BLAST30
Alternative sequenceiVSP_047509316 – 345AVNGF…LPLSV → QEKVIFPTLFMGQ in isoform 3. 1 PublicationAdd BLAST30

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AY004871 mRNA. Translation: AAF97497.1.
AF182078 mRNA. Translation: AAG43425.1.
AF217798 mRNA. Translation: AAF24516.3.
AK056014 mRNA. Translation: BAG51605.1.
DA256375 mRNA. No translation available.
AL832648 mRNA. Translation: CAD89957.3.
AC026130 Genomic DNA. No translation available.
CH471108 Genomic DNA. Translation: EAW90051.1.
CH471108 Genomic DNA. Translation: EAW90052.1.
BC026101 mRNA. Translation: AAH26101.1.
CCDSiCCDS11143.1. [Q9GZM8-1]
CCDS32564.1. [Q9GZM8-3]
RefSeqiNP_001020750.1. NM_001025579.2. [Q9GZM8-3]
NP_110435.1. NM_030808.4. [Q9GZM8-1]
XP_016880674.1. XM_017025185.1. [Q9GZM8-1]
XP_016880676.1. XM_017025187.1. [Q9GZM8-3]
UniGeneiHs.372123.
Hs.740680.

Genome annotation databases

EnsembliENST00000334527; ENSP00000333982; ENSG00000166579. [Q9GZM8-1]
ENST00000402554; ENSP00000384963; ENSG00000166579. [Q9GZM8-3]
GeneIDi81565.
KEGGihsa:81565.
UCSCiuc002gli.5. human. [Q9GZM8-1]

Keywords - Coding sequence diversityi

Alternative splicing

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AY004871 mRNA. Translation: AAF97497.1.
AF182078 mRNA. Translation: AAG43425.1.
AF217798 mRNA. Translation: AAF24516.3.
AK056014 mRNA. Translation: BAG51605.1.
DA256375 mRNA. No translation available.
AL832648 mRNA. Translation: CAD89957.3.
AC026130 Genomic DNA. No translation available.
CH471108 Genomic DNA. Translation: EAW90051.1.
CH471108 Genomic DNA. Translation: EAW90052.1.
BC026101 mRNA. Translation: AAH26101.1.
CCDSiCCDS11143.1. [Q9GZM8-1]
CCDS32564.1. [Q9GZM8-3]
RefSeqiNP_001020750.1. NM_001025579.2. [Q9GZM8-3]
NP_110435.1. NM_030808.4. [Q9GZM8-1]
XP_016880674.1. XM_017025185.1. [Q9GZM8-1]
XP_016880676.1. XM_017025187.1. [Q9GZM8-3]
UniGeneiHs.372123.
Hs.740680.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
2V66X-ray2.10B/C/D/E58-168[»]
ProteinModelPortaliQ9GZM8.
SMRiQ9GZM8.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi123527. 104 interactors.
DIPiDIP-29554N.
IntActiQ9GZM8. 74 interactors.
MINTiMINT-157818.
STRINGi9606.ENSP00000333982.

PTM databases

iPTMnetiQ9GZM8.
PhosphoSitePlusiQ9GZM8.
SwissPalmiQ9GZM8.

Polymorphism and mutation databases

BioMutaiNDEL1.
DMDMi74725006.

Proteomic databases

EPDiQ9GZM8.
MaxQBiQ9GZM8.
PaxDbiQ9GZM8.
PeptideAtlasiQ9GZM8.
PRIDEiQ9GZM8.

Protocols and materials databases

DNASUi81565.
Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENST00000334527; ENSP00000333982; ENSG00000166579. [Q9GZM8-1]
ENST00000402554; ENSP00000384963; ENSG00000166579. [Q9GZM8-3]
GeneIDi81565.
KEGGihsa:81565.
UCSCiuc002gli.5. human. [Q9GZM8-1]

Organism-specific databases

CTDi81565.
DisGeNETi81565.
GeneCardsiNDEL1.
H-InvDBHIX0135343.
HGNCiHGNC:17620. NDEL1.
HPAiHPA017916.
MIMi607538. gene.
neXtProtiNX_Q9GZM8.
OpenTargetsiENSG00000166579.
PharmGKBiPA134887314.
GenAtlasiSearch...

Phylogenomic databases

eggNOGiKOG1853. Eukaryota.
ENOG410XPMP. LUCA.
GeneTreeiENSGT00390000000111.
HOGENOMiHOG000280681.
HOVERGENiHBG082010.
InParanoidiQ9GZM8.
KOiK16739.
OMAiQAFLIMD.
OrthoDBiEOG091G0GBV.
PhylomeDBiQ9GZM8.
TreeFamiTF325693.

Enzyme and pathway databases

ReactomeiR-HSA-2467813. Separation of Sister Chromatids.
R-HSA-2500257. Resolution of Sister Chromatid Cohesion.
R-HSA-5663220. RHO GTPases Activate Formins.
R-HSA-68877. Mitotic Prometaphase.
SIGNORiQ9GZM8.

Miscellaneous databases

ChiTaRSiNDEL1. human.
EvolutionaryTraceiQ9GZM8.
GeneWikiiNDEL1.
GenomeRNAii81565.
PROiQ9GZM8.
SOURCEiSearch...

Gene expression databases

BgeeiENSG00000166579.
CleanExiHS_NDEL1.
ExpressionAtlasiQ9GZM8. baseline and differential.
GenevisibleiQ9GZM8. HS.

Family and domain databases

InterProiIPR033493. NDEL1.
IPR033494. NUDE.
IPR006964. NUDE_dom.
[Graphical view]
PANTHERiPTHR10921. PTHR10921. 1 hit.
PTHR10921:SF0. PTHR10921:SF0. 1 hit.
PfamiPF04880. NUDE_C. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiNDEL1_HUMAN
AccessioniPrimary (citable) accession number: Q9GZM8
Secondary accession number(s): B3KP93
, D3DTS0, J3QT32, Q86T80, Q8TAR7, Q9UH50
Entry historyi
Integrated into UniProtKB/Swiss-Prot: June 13, 2006
Last sequence update: March 1, 2001
Last modified: November 30, 2016
This is version 129 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

Miscellaneousi

Caution

Was originally thought to function as an oligopeptidase (NUDEL-oligopeptidase or endooligopeptidase A) which could regulate peptide levels relevant to brain function.1 Publication

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. Human chromosome 17
    Human chromosome 17: entries, gene names and cross-references to MIM
  2. MIM cross-references
    Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot
  3. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  4. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.