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Protein
Submitted name:

MHC class II transactivator type III

Gene

CIITA

Organism
Rattus norvegicus (Rat)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Ligandi

ATP-bindingSAAS annotation, Nucleotide-binding

Names & Taxonomyi

Protein namesi
Submitted name:
MHC class II transactivator type IIIImported
Gene namesi
Name:CIITAImported
OrganismiRattus norvegicus (Rat)Imported
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus

PTM / Processingi

Proteomic databases

PaxDbiQ9GJD9.

Interactioni

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000003572.

Structurei

3D structure databases

ProteinModelPortaliQ9GJD9.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini360 – 506NACHTInterPro annotationAdd BLAST147

Keywords - Domaini

RepeatSAAS annotation

Phylogenomic databases

eggNOGiKOG4308. Eukaryota.
ENOG410ZBX3. LUCA.
HOGENOMiHOG000107439.
HOVERGENiHBG000174.

Family and domain databases

Gene3Di3.80.10.10. 2 hits.
InterProiIPR032675. L_dom-like.
IPR001611. Leu-rich_rpt.
IPR008095. MHC_II_transact.
IPR007111. NACHT_NTPase.
IPR027417. P-loop_NTPase.
[Graphical view]
PfamiPF13516. LRR_6. 3 hits.
[Graphical view]
PRINTSiPR01719. MHCIIACTVATR.
SUPFAMiSSF52540. SSF52540. 1 hit.
PROSITEiPS50837. NACHT. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q9GJD9-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MRCQVPGPSG SYLQGHTLCA TMELGSPEGS YLELLNSDAD PLHLYHLYDQ
60 70 80 90 100
MDLAGEEEIE LNSETDMDTI NCDQFSKLLQ DMEMDEETRE AYANIAELDQ
110 120 130 140 150
YVFQDTQLEG LSKDLFIQHI GPEEGFGENV EGPAESGEKP QKRRFPEEHA
160 170 180 190 200
MDSKHRKLVP PSRTSLNYLD LPAGHIQIFT TLPQGLWQIS GVGTGLSSVL
210 220 230 240 250
VYHGEMPQVN QLLSSSSPTV PSLPESPDRP GSTSPFAPST ADLPGMPEPA
260 270 280 290 300
LTSRVNETED TTPPSPCQED PEPSIKLPKW PESVERFQHS LQDKYQALPG
310 320 330 340 350
SPSGPLVAME LVRARLERGS NKSQERELAT PDWTERQLAH GGLAEVLRVV
360 370 380 390 400
GDSRRSRETQ VVAVLGKAGQ GKSHWARTVS HIWAQGQLPQ YDFVFYVPCQ
410 420 430 440 450
CLDRPGDTYH LRDLLCPPNL QPLAMNDEVI DHIVRQPDRV LLILDAFEEL
460 470 480 490 500
EAQDSLLHGP CGPLSPEPCS LRGLLAGLFQ RKLLRGCTLL LTARPRGRLA
510 520 530 540 550
QSLSKADAIF EVPSFSTKQA QIYMRHYFEN SGTAGSHDKA LGLLEGQPFL
560 570 580 590 600
LTHSHSPVLC SAVCQLSKAL LDQGAGAQLP CTLTGLYVGL LGPAAQNSPP
610 620 630 640 650
GALVELAKLA WELGRRHQST LQETQFPSVE VKTWAVAQGL MQQTTEAQLA
660 670 680 690 700
FSSFLLQCFL GAVWLAQCNE MKDKELPQYL ALTPRKKRPY DNWLEGVPRF
710 720 730 740 750
LAGLVFQPRA HCLGALVEPA MAAVADRKRK VLTRYLKRLK LGTLRAGRLL
760 770 780 790 800
ELLHCAHETQ EPGIWKHVSH QLPGHLSFLG TRLTAPDVYV LGRALETASQ
810 820 830 840 850
DFSLDLRQTG IEPSRLGDLV GLSCVTSFRA SLSDTMALWE SLQHQGETQL
860 870 880 890 900
LQAAEEKFTI EPFKAKSPKD VEDLDSLVQT QRLRNPSADA AKDLPAIRDL
910 920 930 940 950
KKLEFALGPV LGPQAFPTLA KILPAFSSLQ HLDLDSLSEN KIGDKGVSKL
960 970 980 990 1000
SATFPQLKAL ETLNLSQNSI TDVGACKLAE ALPALAKSLL RLSLYNNCIC
1010 1020 1030 1040 1050
DEGAKSLARV LPDMVSLRVM DVQFNKFTAV GAQQLTSSLQ KCPQVETLAM
1060 1070
WTPTIPFGVQ EHLQQLDARI SLR
Length:1,073
Mass (Da):118,180
Last modified:March 1, 2001 - v1
Checksum:i310FB2DB6EA40E1E
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF251306 mRNA. Translation: AAG02182.1.
UniGeneiRn.16740.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF251306 mRNA. Translation: AAG02182.1.
UniGeneiRn.16740.

3D structure databases

ProteinModelPortaliQ9GJD9.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000003572.

Proteomic databases

PaxDbiQ9GJD9.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Phylogenomic databases

eggNOGiKOG4308. Eukaryota.
ENOG410ZBX3. LUCA.
HOGENOMiHOG000107439.
HOVERGENiHBG000174.

Family and domain databases

Gene3Di3.80.10.10. 2 hits.
InterProiIPR032675. L_dom-like.
IPR001611. Leu-rich_rpt.
IPR008095. MHC_II_transact.
IPR007111. NACHT_NTPase.
IPR027417. P-loop_NTPase.
[Graphical view]
PfamiPF13516. LRR_6. 3 hits.
[Graphical view]
PRINTSiPR01719. MHCIIACTVATR.
SUPFAMiSSF52540. SSF52540. 1 hit.
PROSITEiPS50837. NACHT. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiQ9GJD9_RAT
AccessioniPrimary (citable) accession number: Q9GJD9
Entry historyi
Integrated into UniProtKB/TrEMBL: March 1, 2001
Last sequence update: March 1, 2001
Last modified: November 30, 2016
This is version 93 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.