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Reviewed, UniProtKB/Swiss-Prot Q9FZ24 (PPR4_ARATH)

Last modified November 3, 2009. Version 46. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (2) | Third-party data | Customize display text xml rdf/xml gff fasta
Names and origin · Protein attributes · General annotation (Comments) · Ontologies · Sequence annotation (Features) · Sequences · References · Web resources · Cross-references · Entry information · Relevant documents

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Names and origin

Protein namesRecommended name:
    Pentatricopeptide repeat-containing protein At1g02370, mitochondrial
Gene names
Ordered Locus Names: At1g02370
ORF Names: T6A9.6
OrganismArabidopsis thaliana (Mouse-ear cress) [Complete proteome]
Taxonomic identifier3702 [NCBI]
Taxonomic lineageEukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Magnoliophyta › eudicotyledons › core eudicotyledons › rosids › eurosids II › Brassicales › Brassicaceae › Arabidopsis

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Protein attributes

Sequence length537 AA.
Sequence statusComplete.
Sequence processingThe displayed sequence is further processed into a mature form.
Protein existenceEvidence at transcript level.

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General annotation (Comments)

Subcellular location

Mitochondrion Potential.

Sequence similarities

Belongs to the PPR family. P subfamily.

Contains 7 PPR (pentatricopeptide) repeats.

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Ontologies

Keywords
   Cellular componentMitochondrion
   DomainRepeat
Transit peptide
   Technical termComplete proteome
Gene Ontology (GO)
   Cellular componentmitochondrion

Inferred from electronic annotation. Source: UniProtKB-SubCell

Complete GO annotation...

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Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Transit peptide1 – 1818Mitochondrion Potential
Chain19 – 537519Pentatricopeptide repeat-containing protein At1g02370, mitochondrial
PRO_0000342745

Regions

Repeat171 – 20535PPR 1
Repeat206 – 24035PPR 2
Repeat241 – 27535PPR 3
Repeat277 – 30731PPR 4
Repeat312 – 34635PPR 5
Repeat347 – 37731PPR 6
Repeat382 – 41635PPR 7

Experimental info

Sequence conflict2331M → I in AAL38889. Ref.2

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Sequences

Sequence LengthMass (Da)Tools
Q9FZ24-1 [UniParc].

Last modified March 1, 2001. Version 1.
Checksum: DE27DB5C3566D789

FASTA53760,353
        10         20         30         40         50         60 
MNFRNLIASG SRLGKRFCAT VFAPASATGI VEASVSSPAA ANVVEASVSS PAAENGVRTS 

        70         80         90        100        110        120 
VAAPTVASRQ RELYKKLSML SVTGGTVAET LNQFIMEGIT VRKDDLFRCA KTLRKFRRPQ 

       130        140        150        160        170        180 
HAFEIFDWME KRKMTFSVSD HAICLDLIGK TKGLEAAENY FNNLDPSAKN HQSTYGALMN 

       190        200        210        220        230        240 
CYCVELEEEK AKAHFEIMDE LNFVNNSLPF NNMMSMYMRL SQPEKVPVLV DAMKQRGISP 

       250        260        270        280        290        300 
CGVTYSIWMQ SCGSLNDLDG LEKIIDEMGK DSEAKTTWNT FSNLAAIYTK AGLYEKADSA 

       310        320        330        340        350        360 
LKSMEEKMNP NNRDSHHFLM SLYAGISKGP EVYRVWESLK KARPEVNNLS YLVMLQAMSK 

       370        380        390        400        410        420 
LGDLDGIKKI FTEWESKCWA YDMRLANIAI NTYLKGNMYE EAEKILDGAM KKSKGPFSKA 

       430        440        450        460        470        480 
RQLLMIHLLE NDKADLAMKH LEAAVSDSAE NKDEWGWSSE LVSLFFLHFE KAKDVDGAED 

       490        500        510        520        530 
FCKILSNWKP LDSETMTFLI KTYAAAEKTS PDMRERLSQQ QIEVSEEIQD LLKTVCP

« Hide

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References

« Hide 'large scale' references
[1]"Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana."
Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O., Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E., Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K. expand/collapse author list , Conn L., Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P., Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D., Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J., Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L., Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A., Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A., Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M., Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M., Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P., Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D., Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D., Yu G., Fraser C.M., Venter J.C., Davis R.W.
Nature 408:816-820(2000) [PubMed: 11130712] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: cv. Columbia.
[2]"Empirical analysis of transcriptional activity in the Arabidopsis genome."
Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M., Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G., Liu S.X., Lam B., Sakano H., Wu T., Yu G. expand/collapse author list , Miranda M., Quach H.L., Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C., Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J., Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A., Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C., Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X., Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M., Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K., Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R.
Science 302:842-846(2003) [PubMed: 14593172] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
Strain: cv. Columbia.
[3]"Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins reveals their essential role in organelle biogenesis."
Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C., Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M., Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B., Taconnat L., Small I.
Plant Cell 16:2089-2103(2004) [PubMed: 15269332] [Abstract]
Cited for: GENE FAMILY.
+Additional computationally mapped references.

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Cross-references

Sequence databases

AC064879 Genomic DNA. Translation: AAG00888.1.
AY065448 mRNA. Translation: AAL38889.1.
IPIIPI00536138.
PIRA86154.
RefSeqNP_171739.1.
UniGeneAt.28478

3D structure databases

ModBaseSearch...

Proteomic databases

PRIDEQ9FZ24.

Genome annotation databases

GeneID837735.
GenomeReviewsGene locus AT1G02370 in contig CT485782_GR.
KEGGath:AT1G02370.
NMPDRfig|3702.1.peg.356.

Organism-specific databases

GeneFarm4842. 436.
TAIRAt1g02370.

Phylogenomic databases

OMAFLMSLYA

Gene expression databases

GenevestigatorQ9FZ24.

Family and domain databases

InterProIPR002885. Pentatricopeptide_repeat.
[Graphical view]
PfamPF01535. PPR. 7 hits.
[Graphical view]
TIGRFAMsTIGR00756. PPR. 6 hits.
PROSITEPS51375. PPR. 7 hits.
[Graphical view]
ProtoNetSearch...

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Entry information

Entry namePPR4_ARATH
AccessionPrimary (citable) accession number: Q9FZ24
Secondary accession number(s): Q8VYY9
Entry history
Integrated into UniProtKB/Swiss-Prot: July 1, 2008
Last sequence update: March 1, 2001
Last modified: November 3, 2009
This is version 46 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation projectPPAP (Plant Proteome Annotation Project)

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Relevant documents

Arabidopsis thaliana

Arabidopsis thaliana: entries and gene names

SIMILARITY comments

Index of protein domains and families

Names and origin · Protein attributes · General annotation (Comments) · Ontologies · Sequence annotation (Features) · Sequences · References · Web resources · Cross-references · Entry information · Relevant documents