Q9FZ19 (PPR5_ARATH) Reviewed, UniProtKB/Swiss-Prot

Names and origin

Protein names

Recommended name:
Putative pentatricopeptide repeat-containing protein At1g02420

Gene names

Ordered Locus Names:	At1g02420
ORF Names:	T6A9.11

Organism

Arabidopsis thaliana (Mouse-ear cress)

Taxonomic identifier

3702 [NCBI]

Taxonomic lineage

Eukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Magnoliophyta › eudicotyledons › core eudicotyledons › rosids › malvids › Brassicales › Brassicaceae › Camelineae › Arabidopsis

Protein attributes

Sequence length	491 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Sequence similarities	Belongs to the PPR family. P subfamily. Contains 8 PPR (pentatricopeptide) repeats.
Sequence caution	The sequence AAG00894.1 differs from that shown. Reason: Erroneous initiation.

Ontologies

Keywords
Domain	Repeat
Technical term	Complete proteome Reference proteome
Gene Ontology (GO)
None. [Check GOA]

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Chain	1 – 491	491	Putative pentatricopeptide repeat-containing protein At1g02420		PRO_0000342746
Regions
	Repeat	179 – 209	31	PPR 1
	Repeat	210 – 244	35	PPR 2
	Repeat	245 – 279	35	PPR 3
	Repeat	280 – 314	35	PPR 4
	Repeat	315 – 349	35	PPR 5
	Repeat	350 – 384	35	PPR 6
	Repeat	385 – 419	35	PPR 7
	Repeat	420 – 454	35	PPR 8

Sequences

	Sequence		Length	Mass (Da)
	Q9FZ19 [UniParc]. Last modified July 1, 2008. Version 2. Checksum: 0C135429D7D426C0	FASTA	491	56,557
	10 20 30 40 50 60 MMMILKPLSS HHVSNFRLSV SFLHSVALSD AKVPVEEEGD DAETVFRMIN GSNLQVELKE 70 80 90 100 110 120 SLSSSGIHLS KDLIDRVLKR VRFSHGNPIQ TLEFYRYASA IRGFYHSSFS LDTMLYILGR 130 140 150 160 170 180 NRKFDQIWEL LIETKRKDRS LISPRTMQVV LGRVAKLCSV RQTVESFWKF KRLVPDFFDT 190 200 210 220 230 240 ACFNALLRTL CQEKSMTDAR NVYHSLKHQF QPDLQTFNIL LSGWKSSEEA EAFFEEMKGK 250 260 270 280 290 300 GLKPDVVTYN SLIDVYCKDR EIEKAYKLID KMREEEETPD VITYTTVIGG LGLIGQPDKA 310 320 330 340 350 360 REVLKEMKEY GCYPDVAAYN AAIRNFCIAR RLGDADKLVD EMVKKGLSPN ATTYNLFFRV 370 380 390 400 410 420 LSLANDLGRS WELYVRMLGN ECLPNTQSCM FLIKMFKRHE KVDMAMRLWE DMVVKGFGSY 430 440 450 460 470 480 SLVSDVLLDL LCDLAKVEEA EKCLLEMVEK GHRPSNVSFK RIKLLMELAN KHDEVNNLIQ 490 KMAIFSTEIP R

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana." Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O., Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E., Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K. , Conn L., Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P., Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D., Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J., Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L., Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A., Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A., Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M., Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M., Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P., Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D., Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D., Yu G., Fraser C.M., Venter J.C., Davis R.W. Nature 408:816-820(2000) [PubMed: 11130712] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: cv. Columbia.
[2]	The Arabidopsis Information Resource (TAIR) Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases Cited for: GENOME REANNOTATION. Strain: cv. Columbia.
[3]	"Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins reveals their essential role in organelle biogenesis." Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C., Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M., Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B., Taconnat L., Small I. Plant Cell 16:2089-2103(2004) [PubMed: 15269332] [Abstract] Cited for: GENE FAMILY.

Web resources

Arabidopsis PPR Protein Database

Cross-references

Sequence databases
EMBL GenBank DDBJ	AC064879 Genomic DNA. Translation: AAG00894.1. Different initiation. CP002684 Genomic DNA. Translation: AEE27428.1.
IPI	IPI00538844.
PIR	F86154.
RefSeq	NP_171744.1. NM_100123.1.
UniGene	At.42602. At.51456.
3D structure databases
ProteinModelPortal	Q9FZ19.
SMR	Q9FZ19. Positions 388-413, 422-449.
ModBase	Search...
Proteomic databases
PRIDE	Q9FZ19.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblPlants	AT1G02420.1; AT1G02420.1; AT1G02420.
GeneID	837779.
GenomeReviews	Gene locus AT1G02420 in contig CT485782_GR.
KEGG	ath:AT1G02420.
NMPDR	fig|3702.1.peg.362.
Organism-specific databases
GeneFarm	4843. 436.
TAIR	At1g02420.
Phylogenomic databases
eggNOG	KOG4197.
GeneTree	EPGT00050000001028.
HOGENOM	HBG595572.
InParanoid	Q9FZ19.
OMA	ILLSGWK.
PhylomeDB	Q9FZ19.
ProtClustDB	CLSN2679341.
Gene expression databases
Genevestigator	Q9FZ19.
Family and domain databases
InterPro	IPR002885. Pentatricopeptide_repeat. [Graphical view]
Pfam	PF01535. PPR. 4 hits. [Graphical view]
TIGRFAMs	TIGR00756. PPR. 4 hits.
PROSITE	PS51375. PPR. 9 hits. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

PPR5_ARATH

Accession

Primary (citable) accession number: Q9FZ19

Entry history

Integrated into UniProtKB/Swiss-Prot:	July 1, 2008
Last sequence update:	July 1, 2008
Last modified:	December 14, 2011
This is version 54 of the entry and version 2 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation program

Plant Protein Annotation Program