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Q9FYR6 (Q9FYR6_ARATH) Unreviewed, UniProtKB/TrEMBL

Last modified January 25, 2012. Version 76. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesSubmitted name:
At5g52520 EMBL AAQ65189.1
Submitted name:
Prolyl tRNA synthetase EMBL BAB10183.1
Submitted name:
Prolyl-tRNA synthetase EMBL AED96224.1
Gene names
Name:OVA6 EMBL AED96224.1
Ordered Locus Names:At5g52520 TAIR At5g52520 EMBL BAD44184.1
ORF Names:AT5G52520 EMBL AED96224.1
OrganismArabidopsis thaliana (Mouse-ear cress) EMBL BAB10183.1
Taxonomic identifier3702 [NCBI]
Taxonomic lineageEukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Magnoliophyta › eudicotyledons › core eudicotyledons › rosids › malvids › Brassicales › Brassicaceae › Camelineae › Arabidopsis

Protein attributes

Sequence length543 AA.
Sequence statusComplete.
Protein existenceEvidence at transcript level

Sequences

Sequence LengthMass (Da)Tools
Q9FYR6 [UniParc].

Last modified March 1, 2001. Version 1.
Checksum: 8DDB3B7624E660E0

FASTA54360,747
        10         20         30         40         50         60 
MVSSSLRLPS LTSLLFPATT RYPATLRRTV CLRNRPLSGF ATAPSGTASP ETKSSEVDRL 

        70         80         90        100        110        120 
RSDRAVTPRS QDFNAWYLDV IASAELADYG PVRGTMVIRP YGYAIWEAIQ DYLNVKFKET 

       130        140        150        160        170        180 
GHSNMYFPQF IPYSFIEKEA SHVEGFSPEL ALVTVGGGKE LEEKLVVRPT SETIVNHMFT 

       190        200        210        220        230        240 
QWIHSYRDLP LMINQWANVT RWEMRTKPFI RTLEFLWQEG HTAHATPEEA EKEAKQMIEI 

       250        260        270        280        290        300 
YTRFAFEQTA IPVIPGRKSK LETFAGADIT YTIEAMMGDR KALQAGTSHN LGQNFSRAFG 

       310        320        330        340        350        360 
TQFADENGER QHVWQTSWAV STRFVGGIIM THGDDTGLML PPKIAPIQVV IVPIWKKDTE 

       370        380        390        400        410        420 
KTGVLSAASS VKEALQTAGV RVKLDDTDQR TPGWKFNFWE MKGIPLRIEI GPRDVSSNSV 

       430        440        450        460        470        480 
VVSRRDVPGK AGKVFGISME PSTLVAYVKE KLDEIQTSLL EKALSFRDSN IVDVNSYAEL 

       490        500        510        520        530        540 
KDAISSGKWA RGPWSASDAD EQRVKEETGA TIRCFPFEQT QGTKTCLMTG NPAEEVAIFA 


KSY

« Hide

References

« Hide 'large scale' references
[1]"Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana."
Kazusa DNA Research Institute, Cold Spring Harbor and Washington University in St Louis Sequencing Consortium, European Union Arabidopsis Genome Sequencing Consortium
Tabata S., Kaneko T., Nakamura Y., Kotani H., Kato T., Asamizu E., Miyajima N., Sasamoto S., Kimura T., Hosouchi T., Kawashima K., Kohara M., Matsumoto M., Matsuno A., Muraki A., Nakayama S., Nakazaki N., Naruo K. expand/collapse author list , Okumura S., Shinpo S., Takeuchi C., Wada T., Watanabe A., Yamada M., Yasuda M., Sato S., de la Bastide M., Huang E., Spiegel L., Gnoj L., O'Shaughnessy A., Preston R., Habermann K., Murray J., Johnson D., Rohlfing T., Nelson J., Stoneking T., Pepin K., Spieth J., Sekhon M., Armstrong J., Becker M., Belter E., Cordum H., Cordes M., Courtney L., Courtney W., Dante M., Du H., Edwards J., Fryman J., Haakensen B., Lamar E., Latreille P., Leonard S., Meyer R., Mulvaney E., Ozersky P., Riley A., Strowmatt C., Wagner-McPherson C., Wollam A., Yoakum M., Bell M., Dedhia N., Parnell L., Shah R., Rodriguez M., Hoon See L., Vil D., Baker J., Kirchoff K., Toth K., King L., Bahret A., Miller B., Marra M.A., Martienssen R., McCombie W.R., Wilson R.K., Murphy G., Bancroft I., Volckaert G., Wambutt R., Duesterhoeft A., Stiekema W., Pohl T., Entian K.-D., Terryn N., Hartley N., Bent E., Johnson S., Langham S.-A., McCullagh B., Robben J., Grymonprez B., Zimmermann W., Ramsperger U., Wedler H., Balke K., Wedler E., Peters S., van Staveren M., Dirkse W., Mooijman P., Klein Lankhorst R., Weitzenegger T., Bothe G., Rose M., Hauf J., Berneiser S., Hempel S., Feldpausch M., Lamberth S., Villarroel R., Gielen J., Ardiles W., Bents O., Lemcke K., Kolesov G., Mayer K.F.X., Rudd S., Schoof H., Schueller C., Zaccaria P., Mewes H.-W., Bevan M., Fransz P.F.
Nature 408:823-826(2000) [PubMed: 11130714] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: cv. Columbia.
[2]"Structural analysis of Arabidopsis thaliana chromosome 5. XI."
Kaneko T., Katoh T., Asamizu E., Sato S., Nakamura Y., Kotani H., Tabata S.
Submitted (JUL-1999) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
[3]"Large-scale analysis of RIKEN Arabidopsis full-length (RAFL) cDNAs."
Totoki Y., Seki M., Ishida J., Nakajima M., Enju A., Kamiya A., Narusaka M., Shin-i T., Nakagawa M., Sakamoto N., Oishi K., Kohara Y., Kobayashi M., Toyoda A., Sakaki Y., Sakurai T., Iida K., Akiyama K. expand/collapse author list , Satou M., Toyoda T., Konagaya A., Carninci P., Kawai J., Hayashizaki Y., Shinozaki K.
Submitted (SEP-2004) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
[4]"Arabidopsis ORF clones."
Cheuk R., Chen H., Kim C.J., Shinn P., Bowser L., Carninci P., Dale J.M., Hayashizaki Y., Ishida J., Jones T., Kamiya A., Karlin-Neumann G., Kawai J., Lam B., Lin J., Miranda M., Narusaka M., Nguyen M. expand/collapse author list , Onodera C.S., Palm C.J., Quach H.L., Sakurai T., Satou M., Seki M., Southwick A., Toriumi M., Wong C., Wu H.C., Yamada K., Yu G., Shinozaki K., Davis R.W., Theologis A., Ecker J.R.
Submitted (AUG-2003) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
[5]The Arabidopsis Information Resource (TAIR)
Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: cv. Columbia.
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		BT010566 mRNA. Translation: AAQ65189.1.
CP002688 Genomic DNA. Translation: AED96224.1.
AP000378 Genomic DNA. Translation: BAB10183.1.
AK176421 mRNA. Translation: BAD44184.1.
IPIIPI00544378.
RefSeqNP_200065.1. NM_124631.3.
UniGeneAt.28016.

3D structure databases

HSSPHSSP built from PDB template 1H4Q based on UniProtKB Q93N97.
ProteinModelPortalQ9FYR6.
SMRQ9FYR6. Positions 64-543.
ModBaseSearch...

Protein-protein interaction databases

STRINGQ9FYR6.

Proteomic databases

PRIDEQ9FYR6.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsAT5G52520.1; AT5G52520.1; AT5G52520.
GeneID835328.
GenomeReviewsGene locus AT5G52520 in contig BA000015_GR.
KEGGath:AT5G52520.
NMPDRfig|3702.1.peg.27133.

Organism-specific databases

TAIRAt5g52520.

Phylogenomic databases

eggNOGKOG4163.
GeneTreeEPGT00070000030792.
HOGENOMHBG334108.
InParanoidQ9FYR6.
OMAKFAEYEL.
PhylomeDBQ9FYR6.
ProtClustDBCLSN2684117.

Gene expression databases

ArrayExpressQ9FYR6.
GenevestigatorQ9FYR6.

Family and domain databases

HAMAPMF_01571. Pro_tRNA_synth_type3.
[Tree]
InterProIPR002314. aa-tRNA-synt_IIb_cons-dom.
IPR006195. aa-tRNA-synth_II.
IPR004154. Anticodon-bd.
IPR002316. Pro-tRNA-synth_IIa.
IPR004499. Pro-tRNA-synth_IIa_arc-type.
IPR017449. Pro-tRNA_synth_II.
IPR016061. Pro-tRNA_synth_II_C.
[Graphical view]
Gene3DG3DSA:3.40.50.800. Anticodon_bd. 1 hit.
G3DSA:3.30.110.30. Pro-tRNA-synth_II_C_arc/euk. 1 hit.
KOK01881.
PANTHERPTHR11451:SF6. ProS_fam_I. 1 hit.
PfamPF03129. HGTP_anticodon. 1 hit.
PF09180. ProRS-C_1. 1 hit.
PF00587. tRNA-synt_2b. 1 hit.
[Graphical view]
PRINTSPR01046. TRNASYNTHPRO.
SMARTSM00946. ProRS-C_1. 1 hit.
[Graphical view]
SUPFAMSSF52954. Anticodon_bd. 1 hit.
SSF64586. Pro-tRNA_synth_II_C. 1 hit.
TIGRFAMsTIGR00408. ProS_fam_I. 1 hit.
PROSITEPS50862. AA_TRNA_LIGASE_II. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameQ9FYR6_ARATH
AccessionPrimary (citable) accession number: Q9FYR6
Entry history
Integrated into UniProtKB/TrEMBL: March 1, 2001
Last sequence update: March 1, 2001
Last modified: January 25, 2012
This is version 76 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
to top of pageNames·Attributes·Ontologies·Sequences·References·Cross-refs·Entry info