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Protein

40S ribosomal protein S15-3

Gene

RPS15C

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: -Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

  • RNA binding Source: InterPro
  • structural constituent of ribosome Source: CAFA

GO - Biological processi

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal protein

Enzyme and pathway databases

ReactomeiR-ATH-156827 L13a-mediated translational silencing of Ceruloplasmin expression
R-ATH-1799339 SRP-dependent cotranslational protein targeting to membrane
R-ATH-72689 Formation of a pool of free 40S subunits
R-ATH-72695 Formation of the ternary complex, and subsequently, the 43S complex
R-ATH-72702 Ribosomal scanning and start codon recognition
R-ATH-72706 GTP hydrolysis and joining of the 60S ribosomal subunit
R-ATH-975956 Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)
R-ATH-975957 Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)

Names & Taxonomyi

Protein namesi
Recommended name:
40S ribosomal protein S15-3
Gene namesi
Name:RPS15C
Ordered Locus Names:At5g09500
ORF Names:T5E8_300
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 5

Organism-specific databases

AraportiAT5G09500
TAIRilocus:2184752 AT5G09500

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

Cytoplasm

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001300411 – 15040S ribosomal protein S15-3Add BLAST150

Proteomic databases

PaxDbiQ9FY65
PRIDEiQ9FY65

Expressioni

Gene expression databases

ExpressionAtlasiQ9FY65 baseline and differential
GenevisibleiQ9FY65 AT

Interactioni

Protein-protein interaction databases

BioGridi16087, 1 interactor
STRINGi3702.AT5G09500.1

Structurei

3D structure databases

ProteinModelPortaliQ9FY65
SMRiQ9FY65
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiKOG0898 Eukaryota
COG0185 LUCA
HOGENOMiHOG000111561
InParanoidiQ9FY65
KOiK02958
OMAiPGIRATH
OrthoDBiEOG09360RD8
PhylomeDBiQ9FY65

Family and domain databases

Gene3Di3.30.860.20, 1 hit
HAMAPiMF_00531 Ribosomal_S19, 1 hit
InterProiView protein in InterPro
IPR002222 Ribosomal_S19
IPR020934 Ribosomal_S19_CS
IPR023575 Ribosomal_S19_SF
IPR005713 Ribosomal_S19A/S15e
PANTHERiPTHR11880 PTHR11880, 1 hit
PfamiView protein in Pfam
PF00203 Ribosomal_S19, 1 hit
PIRSFiPIRSF002144 Ribosomal_S19, 1 hit
PRINTSiPR00975 RIBOSOMALS19
SUPFAMiSSF54570 SSF54570, 1 hit
TIGRFAMsiTIGR01025 uS19_arch, 1 hit
PROSITEiView protein in PROSITE
PS00323 RIBOSOMAL_S19, 1 hit

Sequencei

Sequence statusi: Complete.

Q9FY65-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MADPEVAAAG IVKKRTFKKF SFRGVDLDAL LDMSTDDLVK LFPSRIRRRF
60 70 80 90 100
SRGLTRKPMA LIKKLRKAKI EAPAGEKPAA VRTHLRNMII VPEMIGSVIG
110 120 130 140 150
VYNGKTFNQV EIKPEMIGHY LAEFSISYKP VKHGRPGVGA TNSSRFIPLK
Length:150
Mass (Da):16,750
Last modified:March 1, 2001 - v1
Checksum:i434BC1D53A839434
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL391712 Genomic DNA Translation: CAC05476.1
CP002688 Genomic DNA Translation: AED91403.1
BT010135 mRNA Translation: AAQ22604.1
RefSeqiNP_196512.1, NM_120987.3
UniGeneiAt.32501

Genome annotation databases

EnsemblPlantsiAT5G09500.1; AT5G09500.1; AT5G09500
GeneIDi830809
GrameneiAT5G09500.1; AT5G09500.1; AT5G09500
KEGGiath:AT5G09500

Similar proteinsi

Entry informationi

Entry nameiRS153_ARATH
AccessioniPrimary (citable) accession number: Q9FY65
Entry historyiIntegrated into UniProtKB/Swiss-Prot: January 27, 2003
Last sequence update: March 1, 2001
Last modified: April 25, 2018
This is version 125 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome
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Main funding by: National Institutes of Health